mRNA_E-fasciculatus_F_contig13622.2689.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13622.2689.1
Unique NamemRNA_E-fasciculatus_F_contig13622.2689.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13622.2689.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 1.010e-53
Identity = 104/129 (80.62%), Postives = 109/129 (84.50%), Query Frame = 1 
Query:    1 GECRVCAEASGRAWRKGTAGWRDEWNSIAAGRGYAAGKRANNYIEELSLGPGVERTLRVKYCPASPAPVAGGAVGGXXXXXXXXXXXXXXXXASAPAKSLPAAAAGASNGAATPLKRTVSSQERGCARM 387
            G+CRVCAEASGRAWRKGTAGWRDE +SIAAGRGYAAG+RANNYIEELSLGPGVERTLRV+YCPASPA VAGGAVGG                ASAPAKS PAAA GAS+GAATPLKRTVSSQERGCARM
Sbjct:  690 GDCRVCAEASGRAWRKGTAGWRDERSSIAAGRGYAAGQRANNYIEELSLGPGVERTLRVRYCPASPAAVAGGAVGGPDEDDDETATGVCAKNASAPAKSSPAAA-GASSGAATPLKRTVSSQERGCARM 817
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13622.2689.1 vs. uniprot
Match: A0A6H5L1W0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1W0_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 3.670e-9
Identity = 26/29 (89.66%), Postives = 29/29 (100.00%), Query Frame = 1 
Query:    1 GECRVCAEASGRAWRKGTAGWRDEWNSIA 87
            G+CRVCA+ASGRAWRKGTAGWRDEW+SIA
Sbjct:  714 GDCRVCADASGRAWRKGTAGWRDEWSSIA 742
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13622.2689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHH6_ECTSI1.010e-5380.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1W0_9PHAE3.670e-989.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13622contigE-fasciculatus_F_contig13622:781..2024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.8
Seed ortholog evalue2e-46
Seed eggNOG ortholog2880.D8LHH6
EggNOG OGs28MMI@1,2QU5A@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size389
Cds size387
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13622.2689.1prot_E-fasciculatus_F_contig13622.2689.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13622 781..2023 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927859.5402267-CDS-E-fasciculatus_F_contig13622:780..8681622927859.5402267-CDS-E-fasciculatus_F_contig13622:780..868Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13622 781..868 +
1695995726.7028105-CDS-E-fasciculatus_F_contig13622:780..8681695995726.7028105-CDS-E-fasciculatus_F_contig13622:780..868Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13622 781..868 +
1622927859.5526042-CDS-E-fasciculatus_F_contig13622:1300..15161622927859.5526042-CDS-E-fasciculatus_F_contig13622:1300..1516Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13622 1301..1516 +
1695995726.713938-CDS-E-fasciculatus_F_contig13622:1300..15161695995726.713938-CDS-E-fasciculatus_F_contig13622:1300..1516Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13622 1301..1516 +
1622927859.5626187-CDS-E-fasciculatus_F_contig13622:1940..20231622927859.5626187-CDS-E-fasciculatus_F_contig13622:1940..2023Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13622 1941..2023 +
1695995726.724165-CDS-E-fasciculatus_F_contig13622:1940..20231695995726.724165-CDS-E-fasciculatus_F_contig13622:1940..2023Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13622 1941..2023 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13622.2689.1

>prot_E-fasciculatus_F_contig13622.2689.1 ID=prot_E-fasciculatus_F_contig13622.2689.1|Name=mRNA_E-fasciculatus_F_contig13622.2689.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=129bp
GECRVCAEASGRAWRKGTAGWRDEWNSIAAGRGYAAGKRANNYIEELSLG
PGVERTLRVKYCPASPAPVAGGAVGGPDDDDDETATGGGGKNASAPAKSL
PAAAAGASNGAATPLKRTVSSQERGCARM
back to top

mRNA from alignment at E-fasciculatus_F_contig13622:781..2024+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13622.2689.1 ID=mRNA_E-fasciculatus_F_contig13622.2689.1|Name=mRNA_E-fasciculatus_F_contig13622.2689.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1244bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13622:781..2024+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGAGTGTCGGGTTTGCGCGGAGGCTTCGGGTCGAGCGTGGAGGAAGGG
GACAGCTGGATGGAGAGACGAGTGGAACAGCATTGCAGGTATGTATGCAT
ACGAGGTTGGGTGGGTGTACACAAAGAGTGAGAATGGTTAACTGACGCTT
GGCTTTTTCCGGTTTTTCTTTTGGGAAAGGGCGGAATGTCTTGAGGTTTA
CCGGCGGGGGGGGTAGCATTCTTGCGTCTTGCCACACGATATTCTTTTTT
TGTTCGTTTGACAAGGTGGATGACTGGGGACTTAACGCAAGCATCAGAGT
CTTAAATGGCCCCATCCTCCTTCTATCCGGACCACATGTGAAAGTGTTAA
CCCTCTCCGACACCGCTTTACGTCCTTGGGCGCACGCGTTTCACCTGTAG
AAGGAAGACGAACTGGGACCAGTCAGCGCAAACTAGTCGAATGGTATGAT
GCCGGCTTCTAACAAAGTTAGTCGTGGGGTGACACTAACGGTTTTATTTC
GGCTTCTGTACGCCTCACAGCCGGGCGAGGGTATGCCGCCGGGAAGCGGG
CTAACAACTACATCGAGGAGCTGTCGCTGGGTCCCGGCGTGGAGCGAACC
CTCCGCGTGAAGTACTGCCCCGCTTCGCCCGCCCCGGTGGCCGGGGGAGC
GGTGGGAGGTCCGGACGACGACGACGACGAAACGGCGACGGGGGGGGGCG
GCAAGAATGCCTCCGCACCCGCGAAGTCGTTGCCAGGTACTTTGATAGGT
AGCTGCCACCACCATGAGAGGTCCCGCCTGCTAGCCGGGCATTGGCCCAC
GCCCATTATGTGTNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCGT
TTGTGATGTGAGAGCCTGGTCCCGTGAGAACCCGGCGTGCTCCGTCCTGC
CTTTGTAGGGATGCGAGGTGAATGGTCGAACGACTACGGAATGCACGGCT
CTAAGTATGCACACCCTTCGTTGCATAGGGGAGAATTGATGTAGACAGGA
TAGGGAAACATGTTTGAGTCAACTTTTTGGCCAAGCAGGAAGGAACGATT
GGCCATCGGTCCTGTGGGGAACATTGTTCCGACAGTGACATTGCCGAAAG
CCCGCTGCTCGTAACCTCGAACACCGTCGCCCCCCTCCCCCCCCGCCGCC
CTCCCCCTAGCAGCAGCAGCGGGCGCTAGCAACGGTGCCGCCACCCCGTT
GAAGAGGACGGTATCGTCCCAGGAGAGGGGGTGTGCGAGGATGG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13622:781..2024+

>mRNA_E-fasciculatus_F_contig13622.2689.1 ID=mRNA_E-fasciculatus_F_contig13622.2689.1|Name=mRNA_E-fasciculatus_F_contig13622.2689.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=774bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13622:781..2024+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGAGTGTCGGGTTTGCGCGGAGGCTTCGGGTCGAGCGTGGAGGAAGGG
GACAGCTGGATGGAGAGACGAGTGGAACAGCATTGCAGGGGGAGTGTCGG
GTTTGCGCGGAGGCTTCGGGTCGAGCGTGGAGGAAGGGGACAGCTGGATG
GAGAGACGAGTGGAACAGCATTGCAGCCGGGCGAGGGTATGCCGCCGGGA
AGCGGGCTAACAACTACATCGAGGAGCTGTCGCTGGGTCCCGGCGTGGAG
CGAACCCTCCGCGTGAAGTACTGCCCCGCTTCGCCCGCCCCGGTGGCCGG
GGGAGCGGTGGGAGGTCCGGACGACGACGACGACGAAACGGCGACGGGGG
GGGGCGGCAAGAATGCCTCCGCACCCGCGAAGTCGTTGCCAGCCGGGCGA
GGGTATGCCGCCGGGAAGCGGGCTAACAACTACATCGAGGAGCTGTCGCT
GGGTCCCGGCGTGGAGCGAACCCTCCGCGTGAAGTACTGCCCCGCTTCGC
CCGCCCCGGTGGCCGGGGGAGCGGTGGGAGGTCCGGACGACGACGACGAC
GAAACGGCGACGGGGGGGGGCGGCAAGAATGCCTCCGCACCCGCGAAGTC
GTTGCCAGCAGCAGCAGCGGGCGCTAGCAACGGTGCCGCCACCCCGTTGA
AGAGGACGGTATCGTCCCAGGAGAGGGGGTGTGCGAGGATGCAGCAGCAG
CGGGCGCTAGCAACGGTGCCGCCACCCCGTTGAAGAGGACGGTATCGTCC
CAGGAGAGGGGGTGTGCGAGGATG
back to top