mRNA_E-fasciculatus_F_contig13612.2686.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig13612.2686.1 vs. uniprot
Match: D7G075_ECTSI (DNA-directed RNA polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G075_ECTSI) HSP 1 Score: 450 bits (1158), Expect = 1.520e-156 Identity = 219/221 (99.10%), Postives = 220/221 (99.55%), Query Frame = 1
Query: 25 DPRWPRYKALDEDGICRVGARLDPGTIMVNKHSPASTSGSAPVSSDFASTPLSYKAPAESYVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEHGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKV 687
DPRWPRYKALDEDGICRVGARLDPGTIMVNKHSPASTSGS PVSSDFASTPLSYKAPAESYVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEHGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDK+
Sbjct: 120 DPRWPRYKALDEDGICRVGARLDPGTIMVNKHSPASTSGSGPVSSDFASTPLSYKAPAESYVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEHGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKM 340
BLAST of mRNA_E-fasciculatus_F_contig13612.2686.1 vs. uniprot
Match: I2CNY0_NANGC (DNA-directed RNA polymerase subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CNY0_NANGC) HSP 1 Score: 319 bits (817), Expect = 4.140e-98 Identity = 156/226 (69.03%), Postives = 184/226 (81.42%), Query Frame = 1
Query: 22 KDPRWPRYKALDEDGICRVGARLDPGTIMVNKHSPASTS----GSAPVSSDFASTPLSYKAPAESYVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEHGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKV 687
+DPR R++ALD+DGIC+VG RL G++M+NK SP S + GS + F TPLSYK PA S+VD+V++T+NE D L+K+ +RQ RRPEVGDKFSSRHGQKGVCGIIV QEDMPF D GICPDLIMNPHGFPSRMTVGK++E VAGKA V+ G QAYGTAFGE+ GSADRV C ALVE G+SYVGK+++TSGT GEPL+ YIF GPVFYQKLKHMVMDK+
Sbjct: 861 RDPRLRRFEALDKDGICQVGERLGNGSVMINKESPISVADLNMGSGADPTPFKPTPLSYKGPAPSHVDQVLITSNEGGDLLVKVSVRQCRRPEVGDKFSSRHGQKGVCGIIVAQEDMPFNDDGICPDLIMNPHGFPSRMTVGKLIEFVAGKASVMIGRQAYGTAFGEDFGSADRVVACSGALVENGFSYVGKEIITSGTSGEPLLTYIFQGPVFYQKLKHMVMDKM 1086
BLAST of mRNA_E-fasciculatus_F_contig13612.2686.1 vs. uniprot
Match: A0A812TJY5_SYMMI (DNA-directed RNA polymerase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TJY5_SYMMI) HSP 1 Score: 297 bits (760), Expect = 4.470e-98 Identity = 144/203 (70.94%), Postives = 169/203 (83.25%), Query Frame = 1
Query: 88 LDPGTIMVNKHSPAST---SGSAPVSSDFASTPLSYKAPAESYVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEHGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKV 687
L +IMVNK SP + S + PLSYKAPA SYVDKV++T+NEN+++L+K+LLRQTRRPEVGDKFSSRHGQKGVCGIIV QEDMPF+++G+CPDLIMNPHGFPSRMTVGKM+ELVAGKAGV G Q YGTAFGEE G+AD+V + C+ LV+ GYSYVGKD++TSG GEPL +YIFAGPVFYQKLKHMVMDK+
Sbjct: 2 LSSPSIMVNKESPVNAMDLGDGITASPLYKPVPLSYKAPAPSYVDKVLITSNENDNFLVKVLLRQTRRPEVGDKFSSRHGQKGVCGIIVNQEDMPFSETGVCPDLIMNPHGFPSRMTVGKMIELVAGKAGVFEGRQGYGTAFGEEFGNADKVEVACETLVKHGYSYVGKDIMTSGITGEPLQSYIFAGPVFYQKLKHMVMDKM 204
BLAST of mRNA_E-fasciculatus_F_contig13612.2686.1 vs. uniprot
Match: A0A835Z565_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z565_9STRA) HSP 1 Score: 316 bits (810), Expect = 3.450e-97 Identity = 153/223 (68.61%), Postives = 182/223 (81.61%), Query Frame = 1
Query: 25 DPRWPRYKALDEDGICRVGARLDPGTIMVNKHSPASTSGSAP--VSSDFASTPLSYKAPAESYVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEHGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKV 687
D W +YKALD+DGI VGA+L+ T+++NK +P T SA ++ LSYK + SYVDKV++ +NE E+ K+L+RQ RRPEVGDKFSSRHGQKGVCGIIVPQ DMPF++ GICPDLIMNPHGFPSRMTVGKM+EL+AGKAGVLHGHQAYGTAFGEE G+AD+V CQALV+RG+SY GKD+L SG GEP++NYIFAGPVFYQKLKHMVMDK+
Sbjct: 848 DRGWKKYKALDKDGIAYVGAKLEKDTVIINKMTPVGTDISADRAAATKMREASLSYKTSSPSYVDKVMIASNEVENQFFKVLVRQVRRPEVGDKFSSRHGQKGVCGIIVPQADMPFSEMGICPDLIMNPHGFPSRMTVGKMIELIAGKAGVLHGHQAYGTAFGEEFGNADKVTDICQALVDRGFSYCGKDILMSGINGEPVLNYIFAGPVFYQKLKHMVMDKM 1070
BLAST of mRNA_E-fasciculatus_F_contig13612.2686.1 vs. uniprot
Match: A0A7S3H3I2_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3I2_9STRA) HSP 1 Score: 302 bits (774), Expect = 8.440e-93 Identity = 145/228 (63.60%), Postives = 182/228 (79.82%), Query Frame = 1
Query: 22 KDPRWPRYKALDEDGICRVGARLDPGTIMVNKHSPASTS------GSAPVSSDFASTPLSYKAPAESYVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEHGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKV 687
+D R+ + + LD DGIC+VG L+P ++VNK SP++ G PV+S++ T L+YK + VDKV++T+NENE+++IK+L+RQ RRPEVGDKFSSRHGQKGVCG+I+ QEDMPF++ GICPDLIMNPHGFPSRMTVGKM+ELV+GKA V G Q YG+AFGEE G+ADRV + C LV+ GYSYVGKD+LTSG GEPL +Y+F GPVFYQKLKHMVMDK+
Sbjct: 700 EDARFKKQEFLDPDGICQVGQVLEPNFVLVNKFSPSNQGDLMDGGGFNPVASEYKPTKLTYKGSGPATVDKVLITSNENENFIIKVLMRQVRRPEVGDKFSSRHGQKGVCGLILNQEDMPFSERGICPDLIMNPHGFPSRMTVGKMIELVSGKAAVFEGRQGYGSAFGEEFGNADRVEVSCATLVKHGYSYVGKDILTSGITGEPLESYVFMGPVFYQKLKHMVMDKM 927
BLAST of mRNA_E-fasciculatus_F_contig13612.2686.1 vs. uniprot
Match: A0A7S1V8C7_9STRA (DNA-directed RNA polymerase n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V8C7_9STRA) HSP 1 Score: 287 bits (734), Expect = 1.070e-92 Identity = 143/233 (61.37%), Postives = 174/233 (74.68%), Query Frame = 1
Query: 25 DPRWPRYKALDEDGICRVGARLDPGTIMVNKHSPASTSGSAPVSSDFA-------------STPLSYKAPAESYVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEHGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDK 684
D R+ +Y+A+D+DGICRVG L+ G+ MVNK SP TS +S DF + +SY+ A +VDKV++T+NENE +LIK++LRQ RRPEVGDKF+SRHGQKGVCG+IVPQ DMPF + GI PDLIMNPHGFPSRMTVGK++EL+ GKAGV G QAYG+AFGEEHGSAD +AL+ G +Y GKD++ SGT GEPL YIF GPVFYQKLKHMV+DK
Sbjct: 79 DKRFLKYRAIDKDGICRVGEPLESGSYMVNKESPMDTSTG--MSGDFGIQSAGMARQMQYKPSGMSYRGGAPVHVDKVLITSNENEQFLIKVMLRQVRRPEVGDKFASRHGQKGVCGLIVPQADMPFNEFGISPDLIMNPHGFPSRMTVGKLLELLVGKAGVYEGRQAYGSAFGEEHGSADTAEAASEALIRNGLNYTGKDVMYSGTSGEPLNAYIFQGPVFYQKLKHMVLDK 309
BLAST of mRNA_E-fasciculatus_F_contig13612.2686.1 vs. uniprot
Match: A0A6U4JF41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4JF41_9STRA) HSP 1 Score: 301 bits (770), Expect = 1.160e-91 Identity = 146/225 (64.89%), Postives = 179/225 (79.56%), Query Frame = 1
Query: 25 DPRWPRYKALDEDGICRVGARLDPGTIMVNKHSPASTSGSAPVS----SDFASTPLSYKAPAESYVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEHGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKV 687
D R+ ++ ALDEDG+ VG +++PG I++NK SP TS + +++ TP+++K+ A VDKV++T+NENE +LIK+ LRQ RRPEVGDKFSSRHGQKGVCGIIVPQEDMPF + GICPDLIMNPHGFPSRMTVGKM+EL+ GKAGVL G QAYGTAFGE+ G+ADRV + LV G+SY GKD+LTSGT GE + +YIF GPVFYQKLKHMVMDK+
Sbjct: 810 DKRYRKFLALDEDGLPHVGEKVEPGQILINKESPLRTSDPGILEGGSVTEYKPTPVTWKSSASVNVDKVMITSNENEQFLIKVNLRQCRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFNNDGICPDLIMNPHGFPSRMTVGKMIELLTGKAGVLRGRQAYGTAFGEDFGNADRVQFASEELVRHGFSYYGKDILTSGTSGEQICSYIFMGPVFYQKLKHMVMDKM 1034
BLAST of mRNA_E-fasciculatus_F_contig13612.2686.1 vs. uniprot
Match: A0A7S3JVT2_9STRA (DNA-directed RNA polymerase subunit beta (Fragment) n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JVT2_9STRA) HSP 1 Score: 295 bits (756), Expect = 2.070e-89 Identity = 149/246 (60.57%), Postives = 179/246 (72.76%), Query Frame = 1
Query: 25 DPRWPRYKALDEDGICRVGARLDPGTIMVNKHSPA---------------------STSGSAPVSSD----FASTPLSYKAPAESYVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEHGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKV 687
DPR+ RY ALD DGIC VG RL IM+N+ P +T+G+A ++ + P++YK S VD+V++T+NE + +LIK+++RQ RRPEVGDKF+SRHGQKGVCG IVPQEDMPF+D+G+CPDLIMNPHGFPSRMTVGK++ELVAGKAGV G QAYGTAFGE+HGSADR CQALV G++YVGKDML SGT GEPL YIF GP FYQKLKHMVMDK+
Sbjct: 894 DPRYQRYGALDNDGICHVGERLYDHHIMINREVPIDMPVMSTTVSAANNTLGDGTQTTTGNAVNNNQQPQRYKPQPVAYKGSMPSIVDRVLITSNEVDTHLIKVMIRQMRRPEVGDKFASRHGQKGVCGAIVPQEDMPFSDTGVCPDLIMNPHGFPSRMTVGKIIELVAGKAGVFAGRQAYGTAFGEDHGSADRAETACQALVAHGFNYVGKDMLYSGTAGEPLKAYIFMGPCFYQKLKHMVMDKM 1139
BLAST of mRNA_E-fasciculatus_F_contig13612.2686.1 vs. uniprot
Match: A0A7S2WH87_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WH87_9STRA) HSP 1 Score: 294 bits (753), Expect = 3.290e-89 Identity = 148/233 (63.52%), Postives = 179/233 (76.82%), Query Frame = 1
Query: 22 KDPRWPRYKALDEDGICRVGARLDPGTIMVNKHSPAS---------TSGSAPVSSDFASTPLSYKAPAES--YVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEHGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKV 687
+D RW RY LD+DG+C VG +L+PG +MVNK P + T G A + ++ + PLSYK + YVDKV++T NE E LIK+L+RQ RRPE+GDKFSSRHGQKGVCG+IV QE+MPF+D GICPDLIMNPHGFPSRMTVGK++ELV GKAG+L+G Q YGTAFGE+ G+ADRV C + LV+RG+SYV KD LTSG GEP+ YIF GPVFYQKLKHMVMDK+
Sbjct: 807 QDTRWQRYAKLDQDGLCEVGEKLEPGQVMVNKVMPTNVNDNLDHPPTMGGAVMGAEKPA-PLSYKGSVDHHVYVDKVLMTRNETEHCLIKVLVRQCRRPELGDKFSSRHGQKGVCGLIVNQENMPFSDFGICPDLIMNPHGFPSRMTVGKIIELVVGKAGILNGLQGYGTAFGEDFGNADRVVECSKELVKRGFSYVAKDYLTSGITGEPMKAYIFMGPVFYQKLKHMVMDKM 1038
BLAST of mRNA_E-fasciculatus_F_contig13612.2686.1 vs. uniprot
Match: A0A7S2YIK7_9STRA (DNA-directed RNA polymerase n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YIK7_9STRA) HSP 1 Score: 282 bits (721), Expect = 3.450e-89 Identity = 139/235 (59.15%), Postives = 171/235 (72.77%), Query Frame = 1
Query: 25 DPRWPRYKALDEDGICRVGARLDPGTIMVNKHSPASTS-------------GSAPVSSD--FASTPLSYKAPAESYVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEHGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDK 684
D R+ RYKA+D+DGICRVG L+ G+IMVNK SP T+ G A ++ + PL YK+ A SYVDKVV+T+NENE +L+K+++RQ RRPE+GDKF+SRHGQKGVCG+IVP++D+PF + G PDLIMNPHGFPSRMTVGK++EL+ GKA V G Q Y TAFGEE GSAD +AL+ G +Y GKD SGT GE L YIF+GPVFYQKLKHMV+DK
Sbjct: 202 DKRFQRYKAVDDDGICRVGELLENGSIMVNKQSPTDTTSNLGGAEFGFGTQGQAALARQVQYKHAPLPYKSSAPSYVDKVVITSNENEQFLVKVMVRQVRRPEIGDKFASRHGQKGVCGLIVPEQDLPFNEYGHAPDLIMNPHGFPSRMTVGKLLELLVGKAAVFEGRQGYSTAFGEEFGSADTAEAASEALIRNGLNYTGKDTFYSGTNGEALDGYIFSGPVFYQKLKHMVLDK 436 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13612.2686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13612.2686.1 >prot_E-fasciculatus_F_contig13612.2686.1 ID=prot_E-fasciculatus_F_contig13612.2686.1|Name=mRNA_E-fasciculatus_F_contig13612.2686.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=229bp MPLVLPWKDPRWPRYKALDEDGICRVGARLDPGTIMVNKHSPASTSGSAPback to top mRNA from alignment at E-fasciculatus_F_contig13612:15..3381- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig13612.2686.1 ID=mRNA_E-fasciculatus_F_contig13612.2686.1|Name=mRNA_E-fasciculatus_F_contig13612.2686.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3367bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13612:15..3381- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13612:15..3381- >mRNA_E-fasciculatus_F_contig13612.2686.1 ID=mRNA_E-fasciculatus_F_contig13612.2686.1|Name=mRNA_E-fasciculatus_F_contig13612.2686.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1374bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13612:15..3381- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |