mRNA_E-fasciculatus_F_contig13612.2686.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13612.2686.1
Unique NamemRNA_E-fasciculatus_F_contig13612.2686.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13612.2686.1 vs. uniprot
Match: D7G075_ECTSI (DNA-directed RNA polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G075_ECTSI)

HSP 1 Score: 450 bits (1158), Expect = 1.520e-156
Identity = 219/221 (99.10%), Postives = 220/221 (99.55%), Query Frame = 1
Query:   25 DPRWPRYKALDEDGICRVGARLDPGTIMVNKHSPASTSGSAPVSSDFASTPLSYKAPAESYVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEHGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKV 687
            DPRWPRYKALDEDGICRVGARLDPGTIMVNKHSPASTSGS PVSSDFASTPLSYKAPAESYVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEHGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDK+
Sbjct:  120 DPRWPRYKALDEDGICRVGARLDPGTIMVNKHSPASTSGSGPVSSDFASTPLSYKAPAESYVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEHGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKM 340          
BLAST of mRNA_E-fasciculatus_F_contig13612.2686.1 vs. uniprot
Match: I2CNY0_NANGC (DNA-directed RNA polymerase subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CNY0_NANGC)

HSP 1 Score: 319 bits (817), Expect = 4.140e-98
Identity = 156/226 (69.03%), Postives = 184/226 (81.42%), Query Frame = 1
Query:   22 KDPRWPRYKALDEDGICRVGARLDPGTIMVNKHSPASTS----GSAPVSSDFASTPLSYKAPAESYVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEHGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKV 687
            +DPR  R++ALD+DGIC+VG RL  G++M+NK SP S +    GS    + F  TPLSYK PA S+VD+V++T+NE  D L+K+ +RQ RRPEVGDKFSSRHGQKGVCGIIV QEDMPF D GICPDLIMNPHGFPSRMTVGK++E VAGKA V+ G QAYGTAFGE+ GSADRV  C  ALVE G+SYVGK+++TSGT GEPL+ YIF GPVFYQKLKHMVMDK+
Sbjct:  861 RDPRLRRFEALDKDGICQVGERLGNGSVMINKESPISVADLNMGSGADPTPFKPTPLSYKGPAPSHVDQVLITSNEGGDLLVKVSVRQCRRPEVGDKFSSRHGQKGVCGIIVAQEDMPFNDDGICPDLIMNPHGFPSRMTVGKLIEFVAGKASVMIGRQAYGTAFGEDFGSADRVVACSGALVENGFSYVGKEIITSGTSGEPLLTYIFQGPVFYQKLKHMVMDKM 1086          
BLAST of mRNA_E-fasciculatus_F_contig13612.2686.1 vs. uniprot
Match: A0A812TJY5_SYMMI (DNA-directed RNA polymerase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TJY5_SYMMI)

HSP 1 Score: 297 bits (760), Expect = 4.470e-98
Identity = 144/203 (70.94%), Postives = 169/203 (83.25%), Query Frame = 1
Query:   88 LDPGTIMVNKHSPAST---SGSAPVSSDFASTPLSYKAPAESYVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEHGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKV 687
            L   +IMVNK SP +          S  +   PLSYKAPA SYVDKV++T+NEN+++L+K+LLRQTRRPEVGDKFSSRHGQKGVCGIIV QEDMPF+++G+CPDLIMNPHGFPSRMTVGKM+ELVAGKAGV  G Q YGTAFGEE G+AD+V + C+ LV+ GYSYVGKD++TSG  GEPL +YIFAGPVFYQKLKHMVMDK+
Sbjct:    2 LSSPSIMVNKESPVNAMDLGDGITASPLYKPVPLSYKAPAPSYVDKVLITSNENDNFLVKVLLRQTRRPEVGDKFSSRHGQKGVCGIIVNQEDMPFSETGVCPDLIMNPHGFPSRMTVGKMIELVAGKAGVFEGRQGYGTAFGEEFGNADKVEVACETLVKHGYSYVGKDIMTSGITGEPLQSYIFAGPVFYQKLKHMVMDKM 204          
BLAST of mRNA_E-fasciculatus_F_contig13612.2686.1 vs. uniprot
Match: A0A835Z565_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z565_9STRA)

HSP 1 Score: 316 bits (810), Expect = 3.450e-97
Identity = 153/223 (68.61%), Postives = 182/223 (81.61%), Query Frame = 1
Query:   25 DPRWPRYKALDEDGICRVGARLDPGTIMVNKHSPASTSGSAP--VSSDFASTPLSYKAPAESYVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEHGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKV 687
            D  W +YKALD+DGI  VGA+L+  T+++NK +P  T  SA    ++      LSYK  + SYVDKV++ +NE E+   K+L+RQ RRPEVGDKFSSRHGQKGVCGIIVPQ DMPF++ GICPDLIMNPHGFPSRMTVGKM+EL+AGKAGVLHGHQAYGTAFGEE G+AD+V   CQALV+RG+SY GKD+L SG  GEP++NYIFAGPVFYQKLKHMVMDK+
Sbjct:  848 DRGWKKYKALDKDGIAYVGAKLEKDTVIINKMTPVGTDISADRAAATKMREASLSYKTSSPSYVDKVMIASNEVENQFFKVLVRQVRRPEVGDKFSSRHGQKGVCGIIVPQADMPFSEMGICPDLIMNPHGFPSRMTVGKMIELIAGKAGVLHGHQAYGTAFGEEFGNADKVTDICQALVDRGFSYCGKDILMSGINGEPVLNYIFAGPVFYQKLKHMVMDKM 1070          
BLAST of mRNA_E-fasciculatus_F_contig13612.2686.1 vs. uniprot
Match: A0A7S3H3I2_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3I2_9STRA)

HSP 1 Score: 302 bits (774), Expect = 8.440e-93
Identity = 145/228 (63.60%), Postives = 182/228 (79.82%), Query Frame = 1
Query:   22 KDPRWPRYKALDEDGICRVGARLDPGTIMVNKHSPASTS------GSAPVSSDFASTPLSYKAPAESYVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEHGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKV 687
            +D R+ + + LD DGIC+VG  L+P  ++VNK SP++        G  PV+S++  T L+YK    + VDKV++T+NENE+++IK+L+RQ RRPEVGDKFSSRHGQKGVCG+I+ QEDMPF++ GICPDLIMNPHGFPSRMTVGKM+ELV+GKA V  G Q YG+AFGEE G+ADRV + C  LV+ GYSYVGKD+LTSG  GEPL +Y+F GPVFYQKLKHMVMDK+
Sbjct:  700 EDARFKKQEFLDPDGICQVGQVLEPNFVLVNKFSPSNQGDLMDGGGFNPVASEYKPTKLTYKGSGPATVDKVLITSNENENFIIKVLMRQVRRPEVGDKFSSRHGQKGVCGLILNQEDMPFSERGICPDLIMNPHGFPSRMTVGKMIELVSGKAAVFEGRQGYGSAFGEEFGNADRVEVSCATLVKHGYSYVGKDILTSGITGEPLESYVFMGPVFYQKLKHMVMDKM 927          
BLAST of mRNA_E-fasciculatus_F_contig13612.2686.1 vs. uniprot
Match: A0A7S1V8C7_9STRA (DNA-directed RNA polymerase n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V8C7_9STRA)

HSP 1 Score: 287 bits (734), Expect = 1.070e-92
Identity = 143/233 (61.37%), Postives = 174/233 (74.68%), Query Frame = 1
Query:   25 DPRWPRYKALDEDGICRVGARLDPGTIMVNKHSPASTSGSAPVSSDFA-------------STPLSYKAPAESYVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEHGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDK 684
            D R+ +Y+A+D+DGICRVG  L+ G+ MVNK SP  TS    +S DF               + +SY+  A  +VDKV++T+NENE +LIK++LRQ RRPEVGDKF+SRHGQKGVCG+IVPQ DMPF + GI PDLIMNPHGFPSRMTVGK++EL+ GKAGV  G QAYG+AFGEEHGSAD      +AL+  G +Y GKD++ SGT GEPL  YIF GPVFYQKLKHMV+DK
Sbjct:   79 DKRFLKYRAIDKDGICRVGEPLESGSYMVNKESPMDTSTG--MSGDFGIQSAGMARQMQYKPSGMSYRGGAPVHVDKVLITSNENEQFLIKVMLRQVRRPEVGDKFASRHGQKGVCGLIVPQADMPFNEFGISPDLIMNPHGFPSRMTVGKLLELLVGKAGVYEGRQAYGSAFGEEHGSADTAEAASEALIRNGLNYTGKDVMYSGTSGEPLNAYIFQGPVFYQKLKHMVLDK 309          
BLAST of mRNA_E-fasciculatus_F_contig13612.2686.1 vs. uniprot
Match: A0A6U4JF41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4JF41_9STRA)

HSP 1 Score: 301 bits (770), Expect = 1.160e-91
Identity = 146/225 (64.89%), Postives = 179/225 (79.56%), Query Frame = 1
Query:   25 DPRWPRYKALDEDGICRVGARLDPGTIMVNKHSPASTSGSAPVS----SDFASTPLSYKAPAESYVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEHGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKV 687
            D R+ ++ ALDEDG+  VG +++PG I++NK SP  TS    +     +++  TP+++K+ A   VDKV++T+NENE +LIK+ LRQ RRPEVGDKFSSRHGQKGVCGIIVPQEDMPF + GICPDLIMNPHGFPSRMTVGKM+EL+ GKAGVL G QAYGTAFGE+ G+ADRV    + LV  G+SY GKD+LTSGT GE + +YIF GPVFYQKLKHMVMDK+
Sbjct:  810 DKRYRKFLALDEDGLPHVGEKVEPGQILINKESPLRTSDPGILEGGSVTEYKPTPVTWKSSASVNVDKVMITSNENEQFLIKVNLRQCRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFNNDGICPDLIMNPHGFPSRMTVGKMIELLTGKAGVLRGRQAYGTAFGEDFGNADRVQFASEELVRHGFSYYGKDILTSGTSGEQICSYIFMGPVFYQKLKHMVMDKM 1034          
BLAST of mRNA_E-fasciculatus_F_contig13612.2686.1 vs. uniprot
Match: A0A7S3JVT2_9STRA (DNA-directed RNA polymerase subunit beta (Fragment) n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JVT2_9STRA)

HSP 1 Score: 295 bits (756), Expect = 2.070e-89
Identity = 149/246 (60.57%), Postives = 179/246 (72.76%), Query Frame = 1
Query:   25 DPRWPRYKALDEDGICRVGARLDPGTIMVNKHSPA---------------------STSGSAPVSSD----FASTPLSYKAPAESYVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEHGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKV 687
            DPR+ RY ALD DGIC VG RL    IM+N+  P                      +T+G+A  ++     +   P++YK    S VD+V++T+NE + +LIK+++RQ RRPEVGDKF+SRHGQKGVCG IVPQEDMPF+D+G+CPDLIMNPHGFPSRMTVGK++ELVAGKAGV  G QAYGTAFGE+HGSADR    CQALV  G++YVGKDML SGT GEPL  YIF GP FYQKLKHMVMDK+
Sbjct:  894 DPRYQRYGALDNDGICHVGERLYDHHIMINREVPIDMPVMSTTVSAANNTLGDGTQTTTGNAVNNNQQPQRYKPQPVAYKGSMPSIVDRVLITSNEVDTHLIKVMIRQMRRPEVGDKFASRHGQKGVCGAIVPQEDMPFSDTGVCPDLIMNPHGFPSRMTVGKIIELVAGKAGVFAGRQAYGTAFGEDHGSADRAETACQALVAHGFNYVGKDMLYSGTAGEPLKAYIFMGPCFYQKLKHMVMDKM 1139          
BLAST of mRNA_E-fasciculatus_F_contig13612.2686.1 vs. uniprot
Match: A0A7S2WH87_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WH87_9STRA)

HSP 1 Score: 294 bits (753), Expect = 3.290e-89
Identity = 148/233 (63.52%), Postives = 179/233 (76.82%), Query Frame = 1
Query:   22 KDPRWPRYKALDEDGICRVGARLDPGTIMVNKHSPAS---------TSGSAPVSSDFASTPLSYKAPAES--YVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEHGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKV 687
            +D RW RY  LD+DG+C VG +L+PG +MVNK  P +         T G A + ++  + PLSYK   +   YVDKV++T NE E  LIK+L+RQ RRPE+GDKFSSRHGQKGVCG+IV QE+MPF+D GICPDLIMNPHGFPSRMTVGK++ELV GKAG+L+G Q YGTAFGE+ G+ADRV  C + LV+RG+SYV KD LTSG  GEP+  YIF GPVFYQKLKHMVMDK+
Sbjct:  807 QDTRWQRYAKLDQDGLCEVGEKLEPGQVMVNKVMPTNVNDNLDHPPTMGGAVMGAEKPA-PLSYKGSVDHHVYVDKVLMTRNETEHCLIKVLVRQCRRPELGDKFSSRHGQKGVCGLIVNQENMPFSDFGICPDLIMNPHGFPSRMTVGKIIELVVGKAGILNGLQGYGTAFGEDFGNADRVVECSKELVKRGFSYVAKDYLTSGITGEPMKAYIFMGPVFYQKLKHMVMDKM 1038          
BLAST of mRNA_E-fasciculatus_F_contig13612.2686.1 vs. uniprot
Match: A0A7S2YIK7_9STRA (DNA-directed RNA polymerase n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YIK7_9STRA)

HSP 1 Score: 282 bits (721), Expect = 3.450e-89
Identity = 139/235 (59.15%), Postives = 171/235 (72.77%), Query Frame = 1
Query:   25 DPRWPRYKALDEDGICRVGARLDPGTIMVNKHSPASTS-------------GSAPVSSD--FASTPLSYKAPAESYVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEHGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDK 684
            D R+ RYKA+D+DGICRVG  L+ G+IMVNK SP  T+             G A ++    +   PL YK+ A SYVDKVV+T+NENE +L+K+++RQ RRPE+GDKF+SRHGQKGVCG+IVP++D+PF + G  PDLIMNPHGFPSRMTVGK++EL+ GKA V  G Q Y TAFGEE GSAD      +AL+  G +Y GKD   SGT GE L  YIF+GPVFYQKLKHMV+DK
Sbjct:  202 DKRFQRYKAVDDDGICRVGELLENGSIMVNKQSPTDTTSNLGGAEFGFGTQGQAALARQVQYKHAPLPYKSSAPSYVDKVVITSNENEQFLVKVMVRQVRRPEIGDKFASRHGQKGVCGLIVPEQDLPFNEYGHAPDLIMNPHGFPSRMTVGKLLELLVGKAAVFEGRQGYSTAFGEEFGSADTAEAASEALIRNGLNYTGKDTFYSGTNGEALDGYIFSGPVFYQKLKHMVLDK 436          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13612.2686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G075_ECTSI1.520e-15699.10DNA-directed RNA polymerase n=2 Tax=Ectocarpus Tax... [more]
I2CNY0_NANGC4.140e-9869.03DNA-directed RNA polymerase subunit beta n=3 Tax=M... [more]
A0A812TJY5_SYMMI4.470e-9870.94DNA-directed RNA polymerase n=1 Tax=Symbiodinium m... [more]
A0A835Z565_9STRA3.450e-9768.61DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A7S3H3I2_9STRA8.440e-9363.60DNA-directed RNA polymerase subunit beta n=1 Tax=S... [more]
A0A7S1V8C7_9STRA1.070e-9261.37DNA-directed RNA polymerase n=2 Tax=Grammatophora ... [more]
A0A6U4JF41_9STRA1.160e-9164.89DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
A0A7S3JVT2_9STRA2.070e-8960.57DNA-directed RNA polymerase subunit beta (Fragment... [more]
A0A7S2WH87_9STRA3.290e-8963.52DNA-directed RNA polymerase subunit beta n=1 Tax=R... [more]
A0A7S2YIK7_9STRA3.450e-8959.15DNA-directed RNA polymerase n=1 Tax=Amphiprora pal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13612contigE-fasciculatus_F_contig13612:15..3381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score453.0
Seed ortholog evalue8.4e-125
Seed eggNOG ortholog2880.D7G075
Preferred namePOLR3B
KEGG rclassRC02795
KEGG koko:K03010,ko:K03021
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169
KEGG ModuleM00180,M00181
GOsGO:0000428,GO:0001817,GO:0001819,GO:0002682,GO:0002684,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006360,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009553,GO:0009561,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032479,GO:0032481,GO:0032501,GO:0032502,GO:0032648,GO:0032728,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0045088,GO:0045089,GO:0046483,GO:0048229,GO:0048518,GO:0048583,GO:0048584,GO:0048856,GO:0050776,GO:0050778,GO:0050789,GO:0051239,GO:0051240,GO:0055029,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080134,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGsCOG0085@1,KOG0215@2759
EC2.7.7.6
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA polymerase Rpb2, OB-fold
Ec32 orthologEc-05_004090.1
Exons6
Model size687
Cds size687
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13612.2686.1prot_E-fasciculatus_F_contig13612.2686.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13612 15..3381 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927859.215984-CDS-E-fasciculatus_F_contig13612:14..1521622927859.215984-CDS-E-fasciculatus_F_contig13612:14..152Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13612 15..152 -
1695995726.540093-CDS-E-fasciculatus_F_contig13612:14..1521695995726.540093-CDS-E-fasciculatus_F_contig13612:14..152Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13612 15..152 -
1622927859.2299464-CDS-E-fasciculatus_F_contig13612:695..7821622927859.2299464-CDS-E-fasciculatus_F_contig13612:695..782Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13612 696..782 -
1695995726.5536795-CDS-E-fasciculatus_F_contig13612:695..7821695995726.5536795-CDS-E-fasciculatus_F_contig13612:695..782Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13612 696..782 -
1622927859.2494524-CDS-E-fasciculatus_F_contig13612:1033..12071622927859.2494524-CDS-E-fasciculatus_F_contig13612:1033..1207Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13612 1034..1207 -
1695995726.5629046-CDS-E-fasciculatus_F_contig13612:1033..12071695995726.5629046-CDS-E-fasciculatus_F_contig13612:1033..1207Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13612 1034..1207 -
1622927859.2651176-CDS-E-fasciculatus_F_contig13612:1678..17501622927859.2651176-CDS-E-fasciculatus_F_contig13612:1678..1750Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13612 1679..1750 -
1695995726.572515-CDS-E-fasciculatus_F_contig13612:1678..17501695995726.572515-CDS-E-fasciculatus_F_contig13612:1678..1750Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13612 1679..1750 -
1622927859.281465-CDS-E-fasciculatus_F_contig13612:2487..25641622927859.281465-CDS-E-fasciculatus_F_contig13612:2487..2564Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13612 2488..2564 -
1695995726.582801-CDS-E-fasciculatus_F_contig13612:2487..25641695995726.582801-CDS-E-fasciculatus_F_contig13612:2487..2564Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13612 2488..2564 -
1622927859.2922814-CDS-E-fasciculatus_F_contig13612:3242..33811622927859.2922814-CDS-E-fasciculatus_F_contig13612:3242..3381Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13612 3243..3381 -
1695995726.592404-CDS-E-fasciculatus_F_contig13612:3242..33811695995726.592404-CDS-E-fasciculatus_F_contig13612:3242..3381Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13612 3243..3381 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13612.2686.1

>prot_E-fasciculatus_F_contig13612.2686.1 ID=prot_E-fasciculatus_F_contig13612.2686.1|Name=mRNA_E-fasciculatus_F_contig13612.2686.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=229bp
MPLVLPWKDPRWPRYKALDEDGICRVGARLDPGTIMVNKHSPASTSGSAP
VSSDFASTPLSYKAPAESYVDKVVLTANENEDYLIKILLRQTRRPEVGDK
FSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVEL
VAGKAGVLHGHQAYGTAFGEEHGSADRVHLCCQALVERGYSYVGKDMLTS
GTGGEPLMNYIFAGPVFYQKLKHMVMDKV
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mRNA from alignment at E-fasciculatus_F_contig13612:15..3381-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13612.2686.1 ID=mRNA_E-fasciculatus_F_contig13612.2686.1|Name=mRNA_E-fasciculatus_F_contig13612.2686.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3367bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13612:15..3381- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCCCTCGTTTTACCGTGGAAGGATCCGCGATGGCCACGGTACAAAGC CTTGGACGAGGATGGTATCTGTCGGGTCGGGGCCAGGCTCGACCCCGGCA CCATCATGGTCAACAAGCACAGCCCGGCTAGCACATCAGGTGGGTGGGTG TAGTAAGCCCGATGTTTGCTGACCTGTTGTCGCTGCTGGCGCTAGTGCTG GTGCTGCTGGTGTTGGTGCTGGTGCTGCTGTTTTTTCGTTGCTGTTGTTG TGGTTTAGTGCTGCTGCTGCTACCGCTGCTGCTTCTACCGCTGCTGCTGC TGCTGCTGCTGCTATATTCACCATCGTTCGTCGTTTTTCGTGACGCAACT GTCATTGCGGCCAGCACGTCGGGTGTCCCGATACGTTTGTATTTGGTTCT CGTCGCCTAGCTCTAAGCGAGTATAATATTTGCTATCTCAGCTGCTGTAG AATAGAATATTGAAAAACCACCCCACTCTCGTTCGTCGCAGATATTTTTC TCTTTTCTCCTCGACTGACCCCGAGTAACTTGATCGGTGCCTGCTAATTT CAGGTTCCATAGAAGACAACGTGAAATTCAATCAATCATTTGTTGTTTTT AACTTCGAAAAAACTTTGCTCATAGCGCCTAACATCCGCTGGCTGGTGGT CGCAGACCATTTACCCCAAATTCCTAGACCATCATGTCGTCGTATCACGA GTTATTTACTACTGTCCCACAACATGAAAAAATGCCAAAAATGGTAAAGA GAAGGACAAAAAGACACCACGGGGGCTACGTTAAATATAAAGTTTGTAAT TTTATTGGTGCTCGCAGGATCGGCACCGGTCAGCTCGGACTTCGCGTCCA CACCTCTCTCGTACAAGGCACCGGCAGAAAGCTACGTCGACAAGGTGTGT GCTGTGCGCGCTCGCTCCATCTACGGCATCTACGATGTTCAGAAATCTCA CTCTCCTCTTCCCTTCCCAAAGGATGCGCCAGTACAGCAGTACAGCAATG TGCAAGAGTTTTTTTTGTTTTTTTCGTGTTACTTTCCACTAGTACTATTC GTACCGCTGTCGTACCGCTACTGCTGTCGTACCGCTACTGCTGCTGCTGC TGCTGCTGCTGCTGCTGCTGCTGCTGCGGCGGCGGCGGCGGCGGCTCCTA CAGCAGCGGAAGGGTGGTCTCCAAGCGTGGTGTCTGCCTAAGTGGGTACA CTGTACCTGCTGGCTAGCGGTGCAGCTCTCGTGTTGCGAATCCGACAACG CGCCCCGTCATGTGAACGATAACGTGATGGTTGTCTCTTGAACGATAGTC CAGAGCGCGGAGCACGGCAGTGTGGAGGCGAAACCATCTTGCGTGCGGCG CTCTTGAACGATAGTCTAGAGCGTGGAGCACGGCAGTGTGGAGGCGAAAC CATCTTGCGTGCAGCGGTGCCTGCGGCGGCGGCGCGGGTGCTGTCGCTGG TCGGGTCACTTGCTCACGTTTGTCTTGCGTCTGTTTCTCTTTTTCTTGTG CATTGGTGCTGCTGCTGCTGCTGCTGCTGCTACTGCGTGCCGTTGTGTGC TTGTTTATGTGACTTGGCGCGTCTTTTTTTCGCGCGTGATGCTGCCCGTC GCGAATGATGATGATGATGATGATGATGCAGGTAGTGCTCACCGCCAACG AAAACGAGGACTACCTCATCAAGATTCTCCTCCGACAGACCAGAAGACCT GAGGTGCGGTTCGGGGGAGGGGTTAGCCGGCCGCAAGAACAAATTAACAT GCACACACGTATGTTTTTCCATGATATTGCTGCGTCGTTCCATGATCCGC GTATCATGAGTATACGGGTGGGTACAGCAGTGCACATAGGTTTTCCCGTT GATTGGTTCGTTTGCAGAAGGAAGCTGAAGAAGAGACAAACTTGTGGGCG ACTGACCCTGGCTGATGCGTCCAGTAAATATACCGGAATAGGCTCAGAGT ACACGGTAAGACGGACAGAGAGAGGGGGAGGAGGCGAGGAAGAGAGAGAC AGGCAGGCAGAGGACCAGAGACAGCGGGAATGATAGAGATAGAGATTGAG AGAGACAGATGAAGAGATAATATACACACACCGGCTGACAGGGAGTACAA TACGCTTTGCAACCCTTTTCTTGCACTCTTCATGGACGGCGCTCCCCCCC CCCCACTCCAATCGCCACTCCCAGGTCGGAGACAAGTTCTCCTCTCGCCA CGGTCAGAAGGGTGTGTGCGGCATCATCGTGCCTCAGGAAGACATGCCCT TCGCAGACTCGGGCATCTGTCCCGACCTCATCATGAACCCTCACGGGTTC CCGTCCCGTATGACCGTGGGAAAGATGGTTGAGCTGGTCGCCGGAAAGGT GAAACCACCACACGAAACGGTAACGGTAACGGTAGATTTATTTCGTCCGC CATGTAAGCTTATTAAGAGCAGAATGCGTGTGTGGTTTGTCTATATGCGG AGGTTGTTGTGTGGGTCGAGTGAAGTGTCTTCCCCTCTTGGCGCGTGCCA GGGTTATCGTGAAGGGATGTCGTGTCTGTGTACAAGTACGTGTCCCTCGG TTCTTGTCCCGTGTGTGAAGCTCTTCTCCCCCCATCGTCCGTCCGCCAGG CCGGGGTGCTGCACGGGCATCAGGCCTATGGAACGGCCTTCGGAGAGGAG CACGGCAGCGCTGATCGCGTCCACCTCTGTTGTCAGGTAAAACCTAAACA TGCTTCGAGTAAATTGCAACATGCTGGGCCGTACTACGGCAGCGCAACTA CTGCTGATAAGACTGGTATAAACTGAGCCACACCAATTCAGTAGAGACGG TGTGGACCGTCCAGGGCAGCGATTTGCCAATGGTAAGGCCGCGCAGCAGA AGAGCGGGCACAGCCGTGGCAAATGAGACAAATGAGACCGATCGCGTGTA CGTTAAAACACGGTTCGATTTGATGGATCACCAGGAGGCGTGTTGTGCAG GACCAAAGCAGCTTTTGTTTTCTTTTCCCGTCACCAAATCGTGTGCGGAA ACCACGCACTCTCACTTCCTATTTTTTCAATGTGCTTTTTTGTTTTTTGT TTTTTTGTATGGCATTCAGTCCAAAGAGGAGCGCTGTATTTTCATGCGCC ATACTGCCACCCCTCACGGCATGCCGTGTCGCGAAGACCCCCCCACCCTC CTCTTGCCGCCATCCCGGGTTGGTTCATCATCATCCGCCCTGCCTTCCCT CCCTCCCTTCGCACTCCCGCCCCCCGTAGGCTCTTGTGGAGCGAGGCTAC AGCTACGTGGGGAAGGACATGCTTACCTCCGGCACCGGTGGAGAGCCCTT GATGAACTACATCTTCGCCGGACCAGTCTTTTACCAGAAGCTCAAGCACA TGGTCATGGACAAGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13612:15..3381-

>mRNA_E-fasciculatus_F_contig13612.2686.1 ID=mRNA_E-fasciculatus_F_contig13612.2686.1|Name=mRNA_E-fasciculatus_F_contig13612.2686.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1374bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13612:15..3381- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCCCTCGTTTTACCGTGGAAGGATCCGCGATGGCCACGGTACAAAGC
CTTGGACGAGGATGGTATCTGTCGGGTCGGGGCCAGGCTCGACCCCGGCA
CCATCATGGTCAACAAGCACAGCCCGGCTAGCACATCAGATGCCCCTCGT
TTTACCGTGGAAGGATCCGCGATGGCCACGGTACAAAGCCTTGGACGAGG
ATGGTATCTGTCGGGTCGGGGCCAGGCTCGACCCCGGCACCATCATGGTC
AACAAGCACAGCCCGGCTAGCACATCAGGATCGGCACCGGTCAGCTCGGA
CTTCGCGTCCACACCTCTCTCGTACAAGGCACCGGCAGAAAGCTACGTCG
ACAAGGATCGGCACCGGTCAGCTCGGACTTCGCGTCCACACCTCTCTCGT
ACAAGGCACCGGCAGAAAGCTACGTCGACAAGGTAGTGCTCACCGCCAAC
GAAAACGAGGACTACCTCATCAAGATTCTCCTCCGACAGACCAGAAGACC
TGAGGTAGTGCTCACCGCCAACGAAAACGAGGACTACCTCATCAAGATTC
TCCTCCGACAGACCAGAAGACCTGAGGTCGGAGACAAGTTCTCCTCTCGC
CACGGTCAGAAGGGTGTGTGCGGCATCATCGTGCCTCAGGAAGACATGCC
CTTCGCAGACTCGGGCATCTGTCCCGACCTCATCATGAACCCTCACGGGT
TCCCGTCCCGTATGACCGTGGGAAAGATGGTTGAGCTGGTCGCCGGAAAG
GTCGGAGACAAGTTCTCCTCTCGCCACGGTCAGAAGGGTGTGTGCGGCAT
CATCGTGCCTCAGGAAGACATGCCCTTCGCAGACTCGGGCATCTGTCCCG
ACCTCATCATGAACCCTCACGGGTTCCCGTCCCGTATGACCGTGGGAAAG
ATGGTTGAGCTGGTCGCCGGAAAGGCCGGGGTGCTGCACGGGCATCAGGC
CTATGGAACGGCCTTCGGAGAGGAGCACGGCAGCGCTGATCGCGTCCACC
TCTGTTGTCAGGCCGGGGTGCTGCACGGGCATCAGGCCTATGGAACGGCC
TTCGGAGAGGAGCACGGCAGCGCTGATCGCGTCCACCTCTGTTGTCAGGC
TCTTGTGGAGCGAGGCTACAGCTACGTGGGGAAGGACATGCTTACCTCCG
GCACCGGTGGAGAGCCCTTGATGAACTACATCTTCGCCGGACCAGTCTTT
TACCAGAAGCTCAAGCACATGGTCATGGACAAGGTGGCTCTTGTGGAGCG
AGGCTACAGCTACGTGGGGAAGGACATGCTTACCTCCGGCACCGGTGGAG
AGCCCTTGATGAACTACATCTTCGCCGGACCAGTCTTTTACCAGAAGCTC
AAGCACATGGTCATGGACAAGGTG
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