mRNA_E-fasciculatus_F_contig1360.2680.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1360.2680.1
Unique NamemRNA_E-fasciculatus_F_contig1360.2680.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1360.2680.1 vs. uniprot
Match: D8LBJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBJ4_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 9.170e-52
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 3 
Query:    3 MGITAMTVGGAFGIVAKGTVNRLMKVSLRRAPWEYVLGAGIGAYVGNKIPQWEATLISDINEMRADRNMPPVTRVGGFEFGSSVTDRK 266
            MGITAMTVGGAFGIVAKGTVNRLMKVSLRRAPWEYVLGAGIGAYVGNKIPQWEATLISDINEMRADRNMPP TRVGG+EFGSS+TD K
Sbjct:    1 MGITAMTVGGAFGIVAKGTVNRLMKVSLRRAPWEYVLGAGIGAYVGNKIPQWEATLISDINEMRADRNMPPATRVGGYEFGSSITDSK 88
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BLAST of mRNA_E-fasciculatus_F_contig1360.2680.1 vs. uniprot
Match: A0A6H5JVS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS4_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 3.700e-26
Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = 3 
Query:   84 LRRAPWEYVLGAGIGAYVGNKIPQWEATLISDINEMRADRNMPPVTRVGGFEFGSSVTDRK 266
            L  APWEYVLGAG+GAY+GNKIPQWEATLISDINEMRADRNMPP TRVGG+EFGSS+TD K
Sbjct:  587 LSPAPWEYVLGAGVGAYIGNKIPQWEATLISDINEMRADRNMPPATRVGGYEFGSSITDSK 647
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BLAST of mRNA_E-fasciculatus_F_contig1360.2680.1 vs. uniprot
Match: A0A7S2V622_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V622_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.220e-15
Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = 3 
Query:   36 FGIVAKGTVNRLMKVSLRRAPWEYVLGAGIGAYVGNKIPQWEATLISDINEMRADRNMPPVTRVGGFEFGS 248
            +G+  K   N +MKV LRR PWEY++   +GAYVG K+P+W+  LI +INEM  +R +PP+   G F  GS
Sbjct:   17 WGVALKAMTNSVMKVPLRREPWEYLMFGALGAYVGYKMPEWQQNLIDNINEMHEERGLPPLDVDGQFSLGS 87
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BLAST of mRNA_E-fasciculatus_F_contig1360.2680.1 vs. uniprot
Match: A0A7R9ZF43_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZF43_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.130e-10
Identity = 34/78 (43.59%), Postives = 45/78 (57.69%), Query Frame = 3 
Query:    3 MGITAMTVGGAFGIVAKGTVNRLMKVSLRRAPWEYVLGAGIGAYVGNKIPQWEATLISDINEMRADRNMPPVTRVGGF 236
            MG+TAM VGG  G       N   KV L R+PW +V    +G Y G K    EA L++DINE+RAD+ +PP+    G+
Sbjct:   28 MGLTAMLVGGVSGTSMHLLANAARKVPLSRSPWFHVAYFFVGMYAGQKYVTVEAKLLNDINELRADKGLPPMVGTPGY 105
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BLAST of mRNA_E-fasciculatus_F_contig1360.2680.1 vs. uniprot
Match: A0A1Z5KC63_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KC63_FISSO)

HSP 1 Score: 63.9 bits (154), Expect = 2.790e-9
Identity = 27/72 (37.50%), Postives = 43/72 (59.72%), Query Frame = 3 
Query:    3 MGITAMTVGGAFGIVAKGTVNRLMKVSLRRAPWEYVLGAGIGAYVGNKIPQWEATLISDINEMRADRNMPPV 218
            MG+     GG+ G  A+   N + KV + R PW ++    +G Y G K P+WE TL++DIN MR+++ + P+
Sbjct:    1 MGLFTTLFGGSLGFAAQAYSNSIRKVPISRQPWNHLGMFILGCYAGAKYPEWEETLVNDINAMRSEKGLSPM 72
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BLAST of mRNA_E-fasciculatus_F_contig1360.2680.1 vs. uniprot
Match: K0R0Q8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R0Q8_THAOC)

HSP 1 Score: 58.5 bits (140), Expect = 2.270e-6
Identity = 31/72 (43.06%), Postives = 41/72 (56.94%), Query Frame = 3 
Query:    3 MGITAMTVGGAFGIVAKGTVNRLMKVSLRRAPWEYVLGAGIGAYVGNKIPQWEATLISDINEMRADRNMPPV 218
            MG+TA  VG   G       N + KV L R PW +V    +G YVG +  + E  L+ DINE+RAD+ MPP+
Sbjct:  136 MGLTAFFVGAFSGTGMHMMSNAIQKVPLSRRPWMHVGCFFLGGYVGQRWVRLEKELVLDINEIRADKGMPPM 207
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1360.2680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LBJ4_ECTSI9.170e-5295.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVS4_9PHAE3.700e-2686.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2V622_9STRA2.220e-1547.89Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9ZF43_9STRA1.130e-1043.59Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A1Z5KC63_FISSO2.790e-937.50Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
K0R0Q8_THAOC2.270e-643.06Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1360contigE-fasciculatus_F_contig1360:12706..15777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_003750.1
Exons2
Model size1038
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1360.2680.1prot_E-fasciculatus_F_contig1360.2680.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1360 12708..15008 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927857.9002736-UTR-E-fasciculatus_F_contig1360:12705..127071622927857.9002736-UTR-E-fasciculatus_F_contig1360:12705..12707Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1360 12706..12707 +
1695995726.0458581-UTR-E-fasciculatus_F_contig1360:12705..127071695995726.0458581-UTR-E-fasciculatus_F_contig1360:12705..12707Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1360 12706..12707 +
1622927857.9427133-UTR-E-fasciculatus_F_contig1360:15008..157771622927857.9427133-UTR-E-fasciculatus_F_contig1360:15008..15777Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1360 15009..15777 +
1695995726.0814202-UTR-E-fasciculatus_F_contig1360:15008..157771695995726.0814202-UTR-E-fasciculatus_F_contig1360:15008..15777Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1360 15009..15777 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927857.9140394-CDS-E-fasciculatus_F_contig1360:12707..127981622927857.9140394-CDS-E-fasciculatus_F_contig1360:12707..12798Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1360 12708..12798 +
1695995726.0568616-CDS-E-fasciculatus_F_contig1360:12707..127981695995726.0568616-CDS-E-fasciculatus_F_contig1360:12707..12798Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1360 12708..12798 +
1622927857.9297402-CDS-E-fasciculatus_F_contig1360:14832..150081622927857.9297402-CDS-E-fasciculatus_F_contig1360:14832..15008Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1360 14833..15008 +
1695995726.0657282-CDS-E-fasciculatus_F_contig1360:14832..150081695995726.0657282-CDS-E-fasciculatus_F_contig1360:14832..15008Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1360 14833..15008 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1360.2680.1

>prot_E-fasciculatus_F_contig1360.2680.1 ID=prot_E-fasciculatus_F_contig1360.2680.1|Name=mRNA_E-fasciculatus_F_contig1360.2680.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=89bp
MGITAMTVGGAFGIVAKGTVNRLMKVSLRRAPWEYVLGAGIGAYVGNKIP
QWEATLISDINEMRADRNMPPVTRVGGFEFGSSVTDRK*
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mRNA from alignment at E-fasciculatus_F_contig1360:12706..15777+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1360.2680.1 ID=mRNA_E-fasciculatus_F_contig1360.2680.1|Name=mRNA_E-fasciculatus_F_contig1360.2680.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3072bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1360:12706..15777+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAATGGGGATCACTGCCATGACGGTCGGCGGGGCGTTCGGGATAGTGGCG
AAGGGCACCGTCAACAGGCTGATGAAGGTCAGCCTGCGCAGAGGTGAGCA
AAAGCAACATAGAGCGAAAGCATGAAAGCATATAGACTATGCCTTCCCGT
ACCAAACAGGATTCCCACCCTTATGCAACGCGAGCAAATAGTCTTGCCAA
GCAACACCAGGTGCTGGCACAAGCAAGCCCGACGCAAGCCCGACGCAGCT
ACTGCTGTCCTATTGTGTACCAGCGTGCTGCCGTGAAGAGTTCGACAGCG
GCGGTGGCGTGCGGGCTTCCCGCACCATGCGACAGCAAGCTGTAGTCGCA
GCCGCTGGGGCGGCCAGAAGAACGCCTAGTCGACATGCTGCCAACTTCCT
GAGACAAAATTCGCACAGGGATTCGGTTGGTAGTACTGCTGCAGTGCGAG
GACAGCTTCTCTGCATGCGAGTTTGATGACATGAGCTTCCTCTCTTCGAC
CGCCATTTGCTCGTTACGGGCACAGCAGTCTACATACTGTAGTTCGGGAC
CCTTGACCGTCGCACTGCTGCTGTTTTCGTTGTGTTCTACGCAGACCTCG
TTTGCAGTAAGTAGAGTAATTTGTTCCTGATGCAGGGAAAATTACAATCG
TGCAGTCCCGTGGATGTGTCTTGCATTTTGGCACCATGAAGGAATGATTA
CAAATATGACTGTGACGAACCCATTCCGGCCCGACAAGGATTAATCTGGA
CTTCGCAGTCATGAGAGCAGCGATTATTACTGCTGTAAGGTTGAGGGCAC
GAGCTGCTGTGGAGAAGGGCTGCAGCCTATTGCCTATGTTTCTGTAGATG
AATGGTTTGGCATGTCGTACGGGACGACCTACATCTATTTCCTAGTGTTG
ACGTTCGCGGACGGGAGGCAGATGATGATGCTCTCCTTGTGCGATCATCT
CCAAAATCTCATGTGCACACGGCAACATGAGTTGTGCAGCGAAGAACCTG
AAACCGTCAGCGCTCTGCTTCCGCGACCTACATATATTATTCTTGCTCTC
TTGTTGTATGCGCCGACTCGTCTCCAGTACAATGACAGAAGGAATATCTA
GGCAGTTGCTTGCGAGGCGGAAACTGCTGTGCTACTTATGTACTGTACAT
GTCGAAAGTACAGCACAGATTGGGCGTGCTCTGCACCAGCACCCGCTGGT
CCTTCGCAAGCGCGCCCACGAACGCATCGCTGCTGTTTCTGTTGGTGGTG
TGGCTGGTGACGGCCGTTTTTCCGCACTGCAAAACTGCCGTTGCGTGGCT
GTCTGTCCTGCCGTCGCACACAGAACCAAAAGAGAAACATACGGCGGTGT
GAGTGAAGCATGCGTTGTTGGTGTTATGCATACGAGCGGTTGGTGTTTCG
GCTTGGCATGGAGTGAATTCTGCTCTGCTTTAACTGTGGTGAAGCGTCCG
TCTATCCAAAACCATGACATTGGTTGAAATATGCGTACGGCGTATAGGAT
GGCGGCGAAATAAGTTACCCGGGGATTCTCCAATCCCTAGATTCAGGTTT
TGGTGTAGATCGCGAGCACACCATGATAACGAGTTTTGTTTTTCAGTGTT
GGAATGTTCGCGGCACGTTCGAAGGTGTCTGGTATATTTCCCCGCGCTCC
CGAACATGATTGCGATTGAGTTGATCATTGGACTTGCTTCTTCCCGTCAA
TAACTCATTTGGCCGCCTCTCCTTTCTCGTATGGTGCGGTAGAAGTAGCA
CAACACTTTTATGGGCGCAAGTACCGCTGCACGCCTTGCGATTGATGTGC
CAACCCTCTTGGACAGCAAGCATGGCAAACAACTCGCCAGCACGTTGCAG
TGATCTCTTTTCCTCTTCTCTCTCGAGCAAGTATCACTCGGCGAAAGAAG
AGCAACTTCTTGACGAACCCAACCCTGTACTACGCGACGCTGACTCCTGT
CATCTCGCTTGCTTCGACCGTTTCGCCAGCAGGCCGGTGCTTCCTGCTGT
GAGCCCCCCCACCATCACCCACTTCCTCGCGAACAGATTATTTCGGCGAC
TAACCGGTGTACCACCTCTTTCTTTCCTACCCCCCGTCCCGCCTTTTTGC
CAAATCTCACGCGTGGCCACTTTTTAGCGCCTTGGGAGTACGTGCTGGGC
GCGGGAATCGGTGCGTACGTCGGGAACAAGATCCCACAGTGGGAAGCGAC
GCTGATCTCGGACATCAACGAGATGCGGGCAGACCGCAACATGCCCCCCG
TGACACGCGTAGGCGGGTTCGAGTTCGGATCAAGCGTCACGGACAGGAAA
TAAAGCTCTCATCATCGTTGCTGTGCTGCGTCGTGTTTTTTTTTTTGGGG
GGGGGGAGGTTGCGGTAATCCGCACCATGTTTTAGTGTGGTTCTAATGGC
GTCTTCGAAAGGGCTGGTTCGTGTGCGGGTTTAGGAAATCGCGGCTTTTC
TTGTGCTGGCAAGTGAAGCGAGCGGGCATGTCCCCCGGGGTACGGGTCGT
GAGGGAGTCGGGGCGCGCAGTTGATTGCATATTGGCGTTGTGTTGTTGTG
GGAGGTTTGTCGATTCTCCCAGAGCAGCAGCACAACGCGCCTATGGCAGT
GTTGTCTGGGTAAGATAGATTATTGTGGAAGGAAGCGAAGCAGTTATTTA
GTGCTGCGGCTGTTGTTTGCGCAACGATGGACATTTCGGCTGGACTAGGG
TCGGTTTCAAGATCTTGTTGGAGGCCTGGCATGTAACATGCATCGAGGTG
CCGCCGCCGCCGCTCTCTTAGTTGTCTCTAGGCGTGTGGGGGGCGGAGAG
GGGTTGTGGTAGGGTCTAAGCGTCTTTCTCACCATCGCTAGGGTGGGAGA
TCGAACAGCAGAGTCATGTGTGGCGTCCGAGGTGTATGAGGCGGTGGCCT
GCATGCAGGTCTGTCTCGGTGTCTCTTTTTCGAAGACTTTTCATCTTGCT
TCTACAAACCAGACTTGTTGGACACCGGAGGGTCCTTTTCCTTTCAAAAG
GGTATGAACACGCCGCTGCTATTAATAGGAGATTTGTACGCTACAAAGAA
AGTTGATCGCGTGCGCAGCGGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1360:12706..15777+

>mRNA_E-fasciculatus_F_contig1360.2680.1 ID=mRNA_E-fasciculatus_F_contig1360.2680.1|Name=mRNA_E-fasciculatus_F_contig1360.2680.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=534bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1360:12706..15777+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGATCACTGCCATGACGGTCGGCGGGGCGTTCGGGATAGTGGCGAA
GGGCACCGTCAACAGGCTGATGAAGGTCAGCCTGCGCAGAGATGGGGATC
ACTGCCATGACGGTCGGCGGGGCGTTCGGGATAGTGGCGAAGGGCACCGT
CAACAGGCTGATGAAGGTCAGCCTGCGCAGAGCGCCTTGGGAGTACGTGC
TGGGCGCGGGAATCGGTGCGTACGTCGGGAACAAGATCCCACAGTGGGAA
GCGACGCTGATCTCGGACATCAACGAGATGCGGGCAGACCGCAACATGCC
CCCCGTGACACGCGTAGGCGGGTTCGAGTTCGGATCAAGCGTCACGGACA
GGAAATAACGCCTTGGGAGTACGTGCTGGGCGCGGGAATCGGTGCGTACG
TCGGGAACAAGATCCCACAGTGGGAAGCGACGCTGATCTCGGACATCAAC
GAGATGCGGGCAGACCGCAACATGCCCCCCGTGACACGCGTAGGCGGGTT
CGAGTTCGGATCAAGCGTCACGGACAGGAAATAA
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