mRNA_E-fasciculatus_F_contig1360.2679.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1360.2679.1
Unique NamemRNA_E-fasciculatus_F_contig1360.2679.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1360.2679.1 vs. uniprot
Match: A0A6H5JNR4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNR4_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 6.910e-72
Identity = 114/122 (93.44%), Postives = 119/122 (97.54%), Query Frame = 1 
Query:    1 MSKAAAPARAVASRAAPAAPKRGMAGGAAPKYTGWEAQVREKLPKDEHVVVAISGFYVGLYVVCKGISALFSSPKKKEVAAPVVASSATSSDIPEGYEDNFWQWLEGAGNMEKYLATIDKAQ 366
            MSKAAAPARAVASRAAPA PKRGMAGGAAP+YTGWEAQ+REKLPKDEHVVVAISGFYVGLYV+ KGISALFSSP+K EVAAPVVASSATSSDIP+GYEDNFWQWLEGAGNMEKYLATIDKAQ
Sbjct:    7 MSKAAAPARAVASRAAPAVPKRGMAGGAAPEYTGWEAQIREKLPKDEHVVVAISGFYVGLYVLVKGISALFSSPEK-EVAAPVVASSATSSDIPDGYEDNFWQWLEGAGNMEKYLATIDKAQ 127
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BLAST of mRNA_E-fasciculatus_F_contig1360.2679.1 vs. uniprot
Match: A0A6U4IDD0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4IDD0_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.750e-8
Identity = 37/102 (36.27%), Postives = 53/102 (51.96%), Query Frame = 1 
Query:   58 PKRGMAGGAAPKYTGWEAQ--VREKLPKDEHVVVAISGFYVGLYVVCKGISALFSSPKKKEVAAPVVASSATSSDIPEGYEDNFWQWLEGAGNMEKYLATID 357
            PKR   GGAA +Y        VR+ LP+D HVV+AI G Y  LY++ K    LFS  K          +S +SS +    ++ F +W+   GN+EKY   ++
Sbjct:   28 PKR-FGGGAAVEYEPGSPDYIVRQYLPEDRHVVMAICGGYFSLYLLSK----LFSGGKXXXXXXXXXPASTSSSGVKSMADEGFAEWIAVDGNIEKYFKAVE 124
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BLAST of mRNA_E-fasciculatus_F_contig1360.2679.1 vs. uniprot
Match: A0A7R9UII2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UII2_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 4.310e-8
Identity = 39/105 (37.14%), Postives = 55/105 (52.38%), Query Frame = 1 
Query:   58 PKRGMAGGAAPKYTGWEAQ--VREKLPKDEHVVVAISGFYVGLYVVCKGISALFSSPKKKEV---AAPVVASSATSSDIPEGYEDNFWQWLEGAGNMEKYLATID 357
            PKR  AGGA  +Y        VR+ LP D+ +VVAI   Y G+Y+    +S LFS   KKE    AAP  A++  +  +    ++ F  W+   GN EKYL + +
Sbjct:   39 PKR-FAGGAPTEYAPGSLDYIVRQYLPHDKQIVVAIVSGYFGIYL----LSTLFSGGSKKEETAEAAPAPAAAPAAGGVLSMEDEGFGDWIMQEGNFEKYLNSFE 138
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1360.2679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JNR4_9PHAE6.910e-7293.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6U4IDD0_9STRA1.750e-836.27Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9UII2_9STRA4.310e-837.14Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1360contigE-fasciculatus_F_contig1360:9851..12383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score235.0
Seed ortholog evalue1.9e-59
Seed eggNOG ortholog2880.D8LBJ5
EggNOG OGs2CYCG@1,2S3JM@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_003740.1
Exons3
Model size369
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1360.2679.1prot_E-fasciculatus_F_contig1360.2679.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1360 9851..12383 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927857.7873144-CDS-E-fasciculatus_F_contig1360:9850..99811622927857.7873144-CDS-E-fasciculatus_F_contig1360:9850..9981Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1360 9851..9981 -
1695995726.0149186-CDS-E-fasciculatus_F_contig1360:9850..99811695995726.0149186-CDS-E-fasciculatus_F_contig1360:9850..9981Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1360 9851..9981 -
1622927857.846274-CDS-E-fasciculatus_F_contig1360:10901..109951622927857.846274-CDS-E-fasciculatus_F_contig1360:10901..10995Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1360 10902..10995 -
1695995726.025582-CDS-E-fasciculatus_F_contig1360:10901..109951695995726.025582-CDS-E-fasciculatus_F_contig1360:10901..10995Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1360 10902..10995 -
1622927857.86404-CDS-E-fasciculatus_F_contig1360:12239..123831622927857.86404-CDS-E-fasciculatus_F_contig1360:12239..12383Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1360 12240..12383 -
1695995726.034273-CDS-E-fasciculatus_F_contig1360:12239..123831695995726.034273-CDS-E-fasciculatus_F_contig1360:12239..12383Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1360 12240..12383 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1360.2679.1

>prot_E-fasciculatus_F_contig1360.2679.1 ID=prot_E-fasciculatus_F_contig1360.2679.1|Name=mRNA_E-fasciculatus_F_contig1360.2679.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=123bp
MSKAAAPARAVASRAAPAAPKRGMAGGAAPKYTGWEAQVREKLPKDEHVV
VAISGFYVGLYVVCKGISALFSSPKKKEVAAPVVASSATSSDIPEGYEDN
FWQWLEGAGNMEKYLATIDKAQ*
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mRNA from alignment at E-fasciculatus_F_contig1360:9851..12383-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1360.2679.1 ID=mRNA_E-fasciculatus_F_contig1360.2679.1|Name=mRNA_E-fasciculatus_F_contig1360.2679.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2533bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1360:9851..12383- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCGAAGGCTGCGGCACCCGCAAGGGCAGTCGCGTCGCGAGCGGCGCC
GGCAGCCCCAAAGCGCGGGATGGCGGGTGGAGCAGCTCCGAAGTACACGG
GCTGGGAGGCCCAGGTTAGGGAGAAGCTTCCCAAGGACGAGCACGTGAGT
ATTGGACAAGTGGACAAGTGTCGTATCCGTGGCAACGACAACGCAGCGAC
GGAGGCAAGCAGCTGCGGGAGTGGTGCCAATGAAACACGCGTGTTGAGCT
CCGTCTGCGTCACCTTGCTGCTCTGAACGCTCCTGTGTGTTTCGTTTGTG
CCGAACCACCACACGGCGGAACGGCCATGTCCAAGTTTACGTTTCGGAGT
TCGGTTGCTGCACTGCTTGTCCTAGGTTGACCTGTAAGCCTGTAAGGACG
ATTGGACATTGACTACATTGACTACTGCTGTCCCACGAAGAGGAGGGTGC
AAGCTCTATCGTGTTGAACTGTCGAACAGGTTCTGTGGTGGCCCCTCACT
TATGAGATCGAAGCTGTGGTTCACCCCACCATCGCTGATATTTACATCCA
CACCCTTTGCACACCCTGGTGGATGCAGCATTGTACCGGTACATGTACAG
CACTATTCTAGGCCTCGATACTAAATAGGCCGCGAGAGCGGATTCAACTC
TAAAGTGTGCTCGGTATATTCAGCTCAACCTTGCTGCAGTGTTTCTCGGC
CGTTGTCTCAATCAAGTCTTCGCCGGGAGGAACACCTGTGTGCGTGCTTT
TTAAATCCGTGCTTGCAGCTATCTGCTCGACTATGCCCCCTGTTGGGGTG
CACGGCATCCGGAAGCGGGCTTCTTCCGTCAACCAGATTGCTGGGACGGA
TAGACACCCAGCGGATAGCACTAGTCTAGACCATGTAGTTGAACAGGATA
TTTAGCGTGCATTTTATGCGTAAGCAAATTTATTTAACACATGTGTTGTC
GAGGTCAGGCAAAGATTTGCGCAAACGAATGCGAATATTGTAGCACTCGC
CGACATCGTACCGAAAAAGTACTGTAGAACTGCTGTAGTCTCTGCCTCTC
GCCTTATGCATACAACTGCTGTTGTTTCAGGAGCGGGCGGCCTGTAGACC
CTCTCACGTGACTACCCTCGCCTCTCTTGTGTATGCGTTGTCCAATTTCT
TGCACGTCCGAGACGGATATGTACCAGTCGGGAAAGGGGGGCTAGGGCTT
GTTGCCACCACGCCTGTTTTTCTTTCTCGAAACGTGTGTCTACTGCTCTG
GTTCCGTTGAGAAATCCAGCCTGTTTCCCACATGACACTGCTAATCCCAG
GGTACGCGTTAGGGTCGGTCTACTACCGCTCTACATCTGACCCTTCCCTT
CCATGCCGTGCGCCTTTGATGTTAATCGGATGGGACAGGTGGTGGTGGCC
ATCAGCGGGTTCTACGTGGGTTTGTACGTGGTGTGCAAGGGAATCTCGGC
GCTCTTCTCGTCCCCAAAGAAGAAGGAAGTCGGTGAGAAGTCACGGCAAG
AAGGGACACTCACTATTTTACATACAAGTTCGAGTGTTTACCCACCCGTA
GGGATCAATCAGTCTGTCTTGTGACACGCAAGCTTCTGGGCCGTATTCAA
CACATCTGGGGGCTCAGACAATCAAAATTGTTCAGCGGGGCATATCTCGT
ATCTCGATACGTTGATGCGGTGGTTCAAGATGGAAAGGCTGGTGGACCTT
GAGCATGAACGCGTGGAGTGTACCTCTTTCTTGCGCGCTCCGCAACTGGC
ATAGGAACATACGTTCGTTTGCACGTTTACCCGTCGGGGTGATTGAGCGA
AGACGTTGCGCGAGAGGACAGCTAGCCGTACGGACAGCTAGCATACTCCT
TGCTGATGTCGATAGGGGCAGGCAGTCTTTGCATGGTGGAGACGCCTTCG
AGGCAGATGTCGGCGGGACAGCTCTAGGCTTAGTTTACTCTCCCATTTAG
AGTTGCTCTTACAAGTAATGCCAAGAATCAAAGCGAAGGGTGGCGGGTGT
GCCCCCCCCCCCTTCGCTTCGAAGTACCAGCTCGCAGCTGATGATGACGG
CGCAGGTGTTCTATTTTCAGGTTGCAGAGATTCACCCCAGCCCCGATAAA
CATTTAATCGAAAACAAGCATCGTGTGTGTTTCCCTCGAACGTACGTAGC
TAGGCTAGCACCAAGAGGGGTATTTGCATACGCTTCCGAGTGATCCTCCC
GAGCCGCACCTCCACCGCATGCCCTCGTCTCGTCTCATGCATGTCGGAAA
ACTTTGTTGTCGACGCCTCGAGAAAATTTCAACCCACAAAACGCATCTTT
TTACAAACGTCTCGTAATTTCCCTCCCGCTCCTGCCCCCCGCCCTCCGCA
CCCCATCTATGCCCGCTCCTCGCCTATGCACGCGCGCGCTACTCCCTCGC
AGCTGCCCCCGTCGTCGCTTCATCCGCGACGAGTTCCGACATCCCCGAAG
GTTACGAGGACAACTTCTGGCAATGGCTCGAGGGCGCGGGGAACATGGAG
AAGTACCTCGCGACAATCGACAAGGCTCAGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1360:9851..12383-

>mRNA_E-fasciculatus_F_contig1360.2679.1 ID=mRNA_E-fasciculatus_F_contig1360.2679.1|Name=mRNA_E-fasciculatus_F_contig1360.2679.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=738bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1360:9851..12383- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCGAAGGCTGCGGCACCCGCAAGGGCAGTCGCGTCGCGAGCGGCGCC
GGCAGCCCCAAAGCGCGGGATGGCGGGTGGAGCAGCTCCGAAGTACACGG
GCTGGGAGGCCCAGGTTAGGGAGAAGCTTCCCAAGGACGAGCACATGTCG
AAGGCTGCGGCACCCGCAAGGGCAGTCGCGTCGCGAGCGGCGCCGGCAGC
CCCAAAGCGCGGGATGGCGGGTGGAGCAGCTCCGAAGTACACGGGCTGGG
AGGCCCAGGTTAGGGAGAAGCTTCCCAAGGACGAGCACGTGGTGGTGGCC
ATCAGCGGGTTCTACGTGGGTTTGTACGTGGTGTGCAAGGGAATCTCGGC
GCTCTTCTCGTCCCCAAAGAAGAAGGAAGTCGGTGGTGGTGGCCATCAGC
GGGTTCTACGTGGGTTTGTACGTGGTGTGCAAGGGAATCTCGGCGCTCTT
CTCGTCCCCAAAGAAGAAGGAAGTCGCTGCCCCCGTCGTCGCTTCATCCG
CGACGAGTTCCGACATCCCCGAAGGTTACGAGGACAACTTCTGGCAATGG
CTCGAGGGCGCGGGGAACATGGAGAAGTACCTCGCGACAATCGACAAGGC
TCAGTAGCTGCCCCCGTCGTCGCTTCATCCGCGACGAGTTCCGACATCCC
CGAAGGTTACGAGGACAACTTCTGGCAATGGCTCGAGGGCGCGGGGAACA
TGGAGAAGTACCTCGCGACAATCGACAAGGCTCAGTAG
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