mRNA_E-fasciculatus_F_contig13599.2676.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13599.2676.1
Unique NamemRNA_E-fasciculatus_F_contig13599.2676.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13599.2676.1 vs. uniprot
Match: D7FJX7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJX7_ECTSI)

HSP 1 Score: 255 bits (651), Expect = 9.980e-79
Identity = 198/277 (71.48%), Postives = 209/277 (75.45%), Query Frame = 3 
Query:   24 IFPSSATSTHGLMMGTIRNILSACL*TRGDSIGDNAKVLENPQNSKAERDAELLAEQQELFAGLHNLGVLRYAPVASVSRF*EEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIEEEAFLRSHAGGGAGPATAVAA-AARAXXXPAMTSGGLARAMSAEGRQVGCAAGV--RSAWTEGFLVEQEEAFAAAGEQVCQDLKEFRAMVEGPGAAAHEKIAVDMAAAGATEAEFLEEQAVLVEGIQQWQRWEFVGANGGAVAANPALVDALGKEVG 845
            +F ++A +T G       + LSACL          A+V E             LAEQQELFAGLHNLGVLRYAPVA V+RF E XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX IEEEAFLRSHAGGGAGPA A A  A RA   PAMTS G AR MS EGR  GCAAGV  +SAWTE FL EQEEAFAAAGEQV QDLKEFR +VEGPGAAAHEK+A DMAAAGATEAEFLEEQ VL E IQQWQR EFVGANGGAVA NPAL DAL  +VG
Sbjct:   84 VFVATAMNTDG-------SGLSACLGLDKLRQESAARVAECQAQLXXXXXXXXLAEQQELFAGLHNLGVLRYAPVAHVARFQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEEEAFLRSHAGGGAGPAAAAAPPAVRARAGPAMTSAGTAREMSTEGRPEGCAAGVSSKSAWTEEFLAEQEEAFAAAGEQVRQDLKEFRVLVEGPGAAAHEKLAADMAAAGATEAEFLEEQTVLAERIQQWQRREFVGANGGAVAGNPALADALDGKVG 353
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13599.2676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJX7_ECTSI9.980e-7971.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13599contigE-fasciculatus_F_contig13599:2375..3219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size846
Cds size372
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927856.148934-UTR-E-fasciculatus_F_contig13599:2374..28471622927856.148934-UTR-E-fasciculatus_F_contig13599:2374..2847Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13599 2375..2847 +
1695995725.2363935-UTR-E-fasciculatus_F_contig13599:2374..28471695995725.2363935-UTR-E-fasciculatus_F_contig13599:2374..2847Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13599 2375..2847 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927856.1606305-CDS-E-fasciculatus_F_contig13599:2847..32191622927856.1606305-CDS-E-fasciculatus_F_contig13599:2847..3219Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13599 2848..3219 +
1695995725.2447824-CDS-E-fasciculatus_F_contig13599:2847..32191695995725.2447824-CDS-E-fasciculatus_F_contig13599:2847..3219Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13599 2848..3219 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13599.2676.1prot_E-fasciculatus_F_contig13599.2676.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13599 2848..3219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13599.2676.1

>prot_E-fasciculatus_F_contig13599.2676.1 ID=prot_E-fasciculatus_F_contig13599.2676.1|Name=mRNA_E-fasciculatus_F_contig13599.2676.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=124bp
MTSGGLARAMSAEGRQVGCAAGVRSAWTEGFLVEQEEAFAAAGEQVCQDL
KEFRAMVEGPGAAAHEKIAVDMAAAGATEAEFLEEQAVLVEGIQQWQRWE
FVGANGGAVAANPALVDALGKEVG
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mRNA from alignment at E-fasciculatus_F_contig13599:2375..3219+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13599.2676.1 ID=mRNA_E-fasciculatus_F_contig13599.2676.1|Name=mRNA_E-fasciculatus_F_contig13599.2676.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=845bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13599:2375..3219+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCACGCAGCCAATGGCTGGCGCATCTTCCCCAGCAGCGCCACGTCCACG
CACGGCCTCATGATGGGGACCATCCGCAACATCCTTTCGGCGTGTCTCTA
GACGCGAGGAGACTCCATCGGGGACAACGCGAAGGTACTTGAGAATCCCC
AAAACTCGAAGGCCGAGCGCGACGCCGAGCTCCTGGCCGAGCAACAGGAG
CTCTTCGCGGGCCTGCACAACCTCGGCGTGCTGCGGTATGCGCCAGTCGC
GTCCGTGTCCAGGTTCTAGGAGGAGCTGCCCGCGGAGCAGCAAGAGCTGC
GGCTCGTGGCGGAGGGCTTGCGGGGACTGCGGAAAGCGCCCGCTAGCCGG
GTGGCGAGGTGCCGGGAGGAGTTTCGCATCGAGGAGGAGGCGTTCCTGAG
GTCGCACGCCGGGGGAGGAGCGGGGCCGGCGACGGCCGTGGCGGCGGCGG
CTAGGGCAGGAGCGGGGCCGGCGATGACCTCTGGGGGACTCGCCCGAGCG
ATGTCAGCGGAGGGGAGGCAAGTGGGGTGTGCTGCCGGCGTGAGGTCCGC
GTGGACAGAGGGGTTCCTCGTGGAACAAGAGGAGGCGTTCGCTGCGGCCG
GGGAGCAGGTGTGCCAGGACCTCAAGGAGTTCCGAGCGATGGTGGAAGGC
CCGGGGGCGGCAGCGCACGAGAAGATCGCGGTAGACATGGCGGCGGCGGG
GGCAACGGAGGCAGAGTTCTTGGAGGAACAAGCCGTCCTGGTAGAGGGTA
TCCAGCAGTGGCAGCGGTGGGAGTTCGTGGGTGCGAATGGGGGAGCGGTG
GCGGCCAACCCGGCGCTCGTGGATGCCCTTGGCAAAGAGGTGGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13599:2375..3219+

>mRNA_E-fasciculatus_F_contig13599.2676.1 ID=mRNA_E-fasciculatus_F_contig13599.2676.1|Name=mRNA_E-fasciculatus_F_contig13599.2676.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=744bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13599:2375..3219+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACCTCTGGGGGACTCGCCCGAGCGATGTCAGCGGAGGGGAGGCAAGT
GGGGTGTGCTGCCGGCGTGAGGTCCGCGTGGACAGAGGGGTTCCTCGTGG
AACAAGAGGAGGCGTTCGCTGCGGCCGGGGAGCAGGTGTGCCAGGACCTC
AAGGAGTTCCGAGCGATGGTGGAAGGCCCGGGGGCGGCAGCGCACGAGAA
GATCGCGGTAGACATGGCGGCGGCGGGGGCAACGGAGGCAGAGTTCTTGG
AGGAACAAGCCGTCCTGGTAGAGGGTATCCAGCAGTGGCAGCGGTGGGAG
TTCGTGGGTGCGAATGGGGGAGCGGTGGCGGCCAACCCGGCGCTCGTGGA
TGCCCTTGGCAAAGAGGTGGGGATGACCTCTGGGGGACTCGCCCGAGCGA
TGTCAGCGGAGGGGAGGCAAGTGGGGTGTGCTGCCGGCGTGAGGTCCGCG
TGGACAGAGGGGTTCCTCGTGGAACAAGAGGAGGCGTTCGCTGCGGCCGG
GGAGCAGGTGTGCCAGGACCTCAAGGAGTTCCGAGCGATGGTGGAAGGCC
CGGGGGCGGCAGCGCACGAGAAGATCGCGGTAGACATGGCGGCGGCGGGG
GCAACGGAGGCAGAGTTCTTGGAGGAACAAGCCGTCCTGGTAGAGGGTAT
CCAGCAGTGGCAGCGGTGGGAGTTCGTGGGTGCGAATGGGGGAGCGGTGG
CGGCCAACCCGGCGCTCGTGGATGCCCTTGGCAAAGAGGTGGGG
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