mRNA_E-fasciculatus_F_contig1359.2672.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1359.2672.1
Unique NamemRNA_E-fasciculatus_F_contig1359.2672.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1359.2672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1359contigE-fasciculatus_F_contig1359:11837..15462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-26_001820.1
Exons7
Model size1254
Cds size1254
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927855.5819263-CDS-E-fasciculatus_F_contig1359:11836..124061622927855.5819263-CDS-E-fasciculatus_F_contig1359:11836..12406Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1359 11837..12406 +
1695995724.9959686-CDS-E-fasciculatus_F_contig1359:11836..124061695995724.9959686-CDS-E-fasciculatus_F_contig1359:11836..12406Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1359 11837..12406 +
1622927855.609227-CDS-E-fasciculatus_F_contig1359:12722..128261622927855.609227-CDS-E-fasciculatus_F_contig1359:12722..12826Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1359 12723..12826 +
1695995725.00613-CDS-E-fasciculatus_F_contig1359:12722..128261695995725.00613-CDS-E-fasciculatus_F_contig1359:12722..12826Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1359 12723..12826 +
1622927855.6361644-CDS-E-fasciculatus_F_contig1359:13176..132441622927855.6361644-CDS-E-fasciculatus_F_contig1359:13176..13244Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1359 13177..13244 +
1695995725.0173254-CDS-E-fasciculatus_F_contig1359:13176..132441695995725.0173254-CDS-E-fasciculatus_F_contig1359:13176..13244Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1359 13177..13244 +
1622927855.6527193-CDS-E-fasciculatus_F_contig1359:13536..136691622927855.6527193-CDS-E-fasciculatus_F_contig1359:13536..13669Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1359 13537..13669 +
1695995725.02664-CDS-E-fasciculatus_F_contig1359:13536..136691695995725.02664-CDS-E-fasciculatus_F_contig1359:13536..13669Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1359 13537..13669 +
1622927855.6767797-CDS-E-fasciculatus_F_contig1359:14018..141171622927855.6767797-CDS-E-fasciculatus_F_contig1359:14018..14117Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1359 14019..14117 +
1695995725.0359218-CDS-E-fasciculatus_F_contig1359:14018..141171695995725.0359218-CDS-E-fasciculatus_F_contig1359:14018..14117Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1359 14019..14117 +
1622927855.7827778-CDS-E-fasciculatus_F_contig1359:14339..144331622927855.7827778-CDS-E-fasciculatus_F_contig1359:14339..14433Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1359 14340..14433 +
1695995725.05463-CDS-E-fasciculatus_F_contig1359:14339..144331695995725.05463-CDS-E-fasciculatus_F_contig1359:14339..14433Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1359 14340..14433 +
1622927855.8080645-CDS-E-fasciculatus_F_contig1359:15276..154621622927855.8080645-CDS-E-fasciculatus_F_contig1359:15276..15462Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1359 15277..15462 +
1695995725.0635762-CDS-E-fasciculatus_F_contig1359:15276..154621695995725.0635762-CDS-E-fasciculatus_F_contig1359:15276..15462Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1359 15277..15462 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1359.2672.1prot_E-fasciculatus_F_contig1359.2672.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1359 11837..15462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1359.2672.1

>prot_E-fasciculatus_F_contig1359.2672.1 ID=prot_E-fasciculatus_F_contig1359.2672.1|Name=mRNA_E-fasciculatus_F_contig1359.2672.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=418bp
MAGSGRQGNALPKDDRDLCVIASSLNCQQPRSQGSARPVPNRAGTAPFPD
LHRRILPSRPPLLQPRVQSYGKPATRSTNPTSRAAPCAGQLIPSSTKAQD
VLPDPRERKNRAATELPSTEGHSGGSWAEPLGRVPGGAHRARAGGLRGRP
RQPLAVTTLERPGGDASQKDPTSIAQCSRRADNGQGSVGSEQLPTCKRGS
SRLMALSEDVLVQICEYIHEKDIFRLSTASPAAFDEGLWQQLHLVRYGSP
NNSCLEGIPFAHSSKLHLQSDFPIHHSRLFAIRCHHWSIRSMVPPDGSCC
PRLMFAAEAITREDRLLRGNEETSRLDRADIRRKKHSTRASVMRELAVAK
RASTEERMALVDVRSAVERHAYAPGCRPKAPQTPPSWREGHRVRGKGRAT
GTSRIPSPTLTGVFDGA*
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mRNA from alignment at E-fasciculatus_F_contig1359:11837..15462+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1359.2672.1 ID=mRNA_E-fasciculatus_F_contig1359.2672.1|Name=mRNA_E-fasciculatus_F_contig1359.2672.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3626bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1359:11837..15462+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCAGGTTCAGGGCGCCAGGGAAATGCCCTACCGAAAGATGATCGCGA
CTTGTGCGTCATTGCATCAAGCTTGAATTGCCAACAACCCCGATCCCAGG
GCTCTGCCCGTCCTGTGCCGAATCGCGCTGGCACAGCACCTTTCCCCGAT
TTACACCGGCGCATTCTTCCTTCACGCCCACCTCTGCTCCAGCCACGTGT
TCAATCCTATGGTAAGCCAGCAACACGCTCCACCAATCCAACCAGCCGAG
CGGCGCCGTGTGCCGGCCAACTGATTCCCTCTTCGACCAAAGCTCAGGAC
GTCTTGCCGGATCCCCGTGAGCGCAAAAACAGAGCAGCTACCGAGCTTCC
TTCAACAGAAGGCCACTCGGGAGGCTCCTGGGCCGAACCCCTGGGAAGGG
TTCCTGGTGGTGCCCATAGAGCAAGAGCGGGAGGTCTTCGGGGACGACCG
CGGCAACCGTTGGCTGTTACGACACTCGAGCGTCCCGGTGGCGATGCCAG
CCAAAAAGACCCAACCTCAATCGCGCAATGCTCGAGACGTGCGGACAACG
GACAAGGAAGTGTTGGATCTGTGAGTTCAGGATGTTATCACCGGCAACGC
ACTACATTGTCGTGTTCGCCACGATACAACTTTCAGCACACGGCCGACCT
CGCAGCTATAGCTGCAGCCTTCGTAGATGTAGAAACACCTGACATTTTTT
GAGTTGTTCGACTGTTGGCTCGATGTTTTCACGTTTCCGGGTGGGGGGCC
GCTACAGCATATCTCCAGCATTTTGTTCGCCCTAGCAGGCTTGAAGGAAC
TACAAACCGACGTGACACGCACAGGACTTCCGGCGTGGGTGGGCCACCCA
TCGTGCACCTTTTCGACGTTTGTTGTTGTCCGGCAGGAACAGCTGCCCAC
CTGCAAGAGGGGCTCCTCGAGGCTGATGGCTCTGTCGGAAGATGTTCTGG
TCCAAATATGCGAGTACATTCATGAGAAGGACATCTTCAGGTGCGGCACA
AGAGCACTTGAACGTGCTTGGTTTTCTGTGGAGGCGTGCGTATTCGTGCA
GTTTTTTTAGCCGTCCGGAGGGTGGCAGCCCTTAGTTGTAGCGGTCGGGT
CGTGTCCTTGTTGATGTGCTGCTTGCTTTGGGGTATCACGGAACAAGAAA
CTTGTGCTGTTCCTCGACAATCGCGTCAAACTCAATTGCGCGACTGCTGA
AAACAAGTGGTTATGTAGCTGTGAGCAAGTCCTTTCCCGCGTTACGAAAG
AGAGTATCACAGGAGCTTGCCGCCTGGTTGATCACCGGCACCTGTGCCAA
CGCCCGCTTCCAACGCACGCGCGACGTTTCCCTCCCATAGGCTGTCGACA
GCCTCTCCAGCGGCGTTCGACGAGGGGCTATGGCAGCAGCTACATCTCGT
TCGATACGGTAAGGAGCGGTTTCGTAGAGCAAGAGCCCTAGGCTCCTATG
AATGAGGTGTGTGATTTCCCCGCACATGTGCAAGAGGGATAGCGGATAAG
GTCAGAAGCTCCAGAGGTCGCTAAGTCCCCGTAGCTTCAAGCCGGCCTGG
CGTCAATCTGCTTTCCATCTCCCCGGATACAACAGCAACACCGCGAGATG
CTCACCATCAACAGAGGCAACTCTTTGCACATTCCCCCTACGAAAGCGTC
AACGAACCAAGGACGGACGTCACCGCCTGGCTGACTCATCACATCCGCAG
GGTCACCGAACAACTCCTGCCTTGAGGGTATTCCGTTCGCACACTCTTCT
AAGCTTCATCTCCAGAGCGACTTCCCGATACACCACTCGAGATTGTTCGC
CATCCGGTGCCATCATTGGAGCATCCGTTCCATGTGAGGGCCGAGAATAC
CCGCAGCAAGTCAACAACACATATATTTAAATGGAAATTCAACAACACAT
CCTAGATCGACGCCTTTTCAGGGGAAATGTGATTTGCCGGGGCTCGTGGT
TGCCGCACAGGCAGCTGAATGGGACGATCGATAGCCCGGAGCGTTCGCTA
TTGGCGGGGGAATTTTTCAACAGAGAGCTTACTCTACTCGAGATAAAAAT
CGGTGCTTCAGAACCTCTTGGTATGGCAGAACGCATCCTTATCATGGGAG
CCTTACGGAAAATTTCTAGGCGCTCTTGTCGGACTCAACTGTCCTTCCCG
TTGGTGTCCTTACCCTGGTGTGCCCTCCACAGGGTTCCGCCGGACGGCAG
CTGTTGCCCTCGGTTGATGTTCGCAGCTGAAGCGATAACGCGGGAGGACC
GATTATTGCGCGGTAATGAAGAAACAAGTCGGTGAGAAACATGCCAGGTC
TGTTGAAAGAACTGTCAGCTCTTTTTTTCTGTCCCATCATCGTCTCATTC
CGTTGGCTTCCGATGCCGCATTCCCACGACCCGCGACCTCAGTGTCCGGA
GATGTGGACGCGTCTCGATCCAACCCACTGTTATTTTGCTTCGTACTAAA
GCGATGGGTGTGTGATCTAAATTCTGTTTCTGTCCGGTGATGGGGCGACG
CAGGTTGGACAGAGCGGACATTCGTCGGAAGAAGCATTCCACCCGTGCCT
CTGTGATGCGAGAGCTAGCCGTTGCGAAGCGAGCCAGCACGGAAGAGGTA
GGAAATTGGATGTACTCTGGGTCGGTGACAGCATCGGCATTACTTTTTTT
TTGCCGCACCGGTCTGTTTCTCGTGGCTTAGCGCTCTGTTGAGAGGCAGT
CGATCCCTTCAAAGGATCGTAATCGATGGTAAAACGTTTAGCACATTCGG
GTATTAAATCATTGGCAACCACTTACTGGACCATTTCTGATCTATGTTCT
TGTTGCGCCTGAAGAACGCCAACAACAGAGAACCTAGCCAACGGGTTCCA
ACAGTCCAAACTGTTTTGAACTCTTGGAACAGTAACCGCGCGAAACGAAA
GAGGAGTGCCCCCCCCCCGTCTCAATAGCCACGCCCATGGGGAGACAATA
TTTGCCTTTTTGCGGATACTCTGCCCTGAAAGAACATCGAATCAAGTGTC
GACTCGGGGGCGTTTCCGGTACTATTAGAGTACTCTGTTTCAGTCGAGAC
TACCCCAGGCGCTACGAACAAGGGTTTGGTGAGAGACGTCCGCTGTGTCG
GGAGGTGTGCCAGGTGCTTCTGTCTCGAAACTTGACAGGTTCGGTTGGCC
TTCTAGAGCCCCGAGCGCTGTCGCCACCTGTATTGAAAACACGTCGTTGT
CGTTTTTCTAGCGCCTCGCACTGAGCTGGCACTGGTGACGTCATGTCGTT
ATCGAACCGGTACGAGAATTTTGTCAGCATGCTTCCATCCGTTCCACCCA
GCTTCGTGAACCTTCTCTTCGAAATGAACCGCGCGCTGCCTTCCTTCTTG
GGTAGTTGCTCGACGACGCGGATCGATCTGTGTGGTTGGCACCGTGAACG
ATCTATCCCGCCCTCTGCTCGCTTGATCCGTCACGCGCAGCGCATGGCGC
TGGTCGACGTTCGATCCGCGGTGGAACGACACGCCTACGCCCCCGGATGT
CGCCCGAAAGCCCCTCAAACTCCACCCTCGTGGCGAGAAGGCCACCGGGT
CAGGGGCAAGGGGAGGGCGACTGGGACGTCGAGGATACCATCCCCAACTC
TCACCGGCGTGTTTGACGGGGCGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1359:11837..15462+

>mRNA_E-fasciculatus_F_contig1359.2672.1 ID=mRNA_E-fasciculatus_F_contig1359.2672.1|Name=mRNA_E-fasciculatus_F_contig1359.2672.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2508bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1359:11837..15462+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCAGGTTCAGGGCGCCAGGGAAATGCCCTACCGAAAGATGATCGCGA
CTTGTGCGTCATTGCATCAAGCTTGAATTGCCAACAACCCCGATCCCAGG
GCTCTGCCCGTCCTGTGCCGAATCGCGCTGGCACAGCACCTTTCCCCGAT
TTACACCGGCGCATTCTTCCTTCACGCCCACCTCTGCTCCAGCCACGTGT
TCAATCCTATGGTAAGCCAGCAACACGCTCCACCAATCCAACCAGCCGAG
CGGCGCCGTGTGCCGGCCAACTGATTCCCTCTTCGACCAAAGCTCAGGAC
GTCTTGCCGGATCCCCGTGAGCGCAAAAACAGAGCAGCTACCGAGCTTCC
TTCAACAGAAGGCCACTCGGGAGGCTCCTGGGCCGAACCCCTGGGAAGGG
TTCCTGGTGGTGCCCATAGAGCAAGAGCGGGAGGTCTTCGGGGACGACCG
CGGCAACCGTTGGCTGTTACGACACTCGAGCGTCCCGGTGGCGATGCCAG
CCAAAAAGACCCAACCTCAATCGCGCAATGCTCGAGACGTGCGGACAACG
GACAAGGAAGTGTTGGATCTATGGCAGGTTCAGGGCGCCAGGGAAATGCC
CTACCGAAAGATGATCGCGACTTGTGCGTCATTGCATCAAGCTTGAATTG
CCAACAACCCCGATCCCAGGGCTCTGCCCGTCCTGTGCCGAATCGCGCTG
GCACAGCACCTTTCCCCGATTTACACCGGCGCATTCTTCCTTCACGCCCA
CCTCTGCTCCAGCCACGTGTTCAATCCTATGGTAAGCCAGCAACACGCTC
CACCAATCCAACCAGCCGAGCGGCGCCGTGTGCCGGCCAACTGATTCCCT
CTTCGACCAAAGCTCAGGACGTCTTGCCGGATCCCCGTGAGCGCAAAAAC
AGAGCAGCTACCGAGCTTCCTTCAACAGAAGGCCACTCGGGAGGCTCCTG
GGCCGAACCCCTGGGAAGGGTTCCTGGTGGTGCCCATAGAGCAAGAGCGG
GAGGTCTTCGGGGACGACCGCGGCAACCGTTGGCTGTTACGACACTCGAG
CGTCCCGGTGGCGATGCCAGCCAAAAAGACCCAACCTCAATCGCGCAATG
CTCGAGACGTGCGGACAACGGACAAGGAAGTGTTGGATCTGAACAGCTGC
CCACCTGCAAGAGGGGCTCCTCGAGGCTGATGGCTCTGTCGGAAGATGTT
CTGGTCCAAATATGCGAGTACATTCATGAGAAGGACATCTTCAGGAACAG
CTGCCCACCTGCAAGAGGGGCTCCTCGAGGCTGATGGCTCTGTCGGAAGA
TGTTCTGGTCCAAATATGCGAGTACATTCATGAGAAGGACATCTTCAGGC
TGTCGACAGCCTCTCCAGCGGCGTTCGACGAGGGGCTATGGCAGCAGCTA
CATCTCGTTCGATACGGCTGTCGACAGCCTCTCCAGCGGCGTTCGACGAG
GGGCTATGGCAGCAGCTACATCTCGTTCGATACGGGTCACCGAACAACTC
CTGCCTTGAGGGTATTCCGTTCGCACACTCTTCTAAGCTTCATCTCCAGA
GCGACTTCCCGATACACCACTCGAGATTGTTCGCCATCCGGTGCCATCAT
TGGAGCATCCGTTCCATGGTCACCGAACAACTCCTGCCTTGAGGGTATTC
CGTTCGCACACTCTTCTAAGCTTCATCTCCAGAGCGACTTCCCGATACAC
CACTCGAGATTGTTCGCCATCCGGTGCCATCATTGGAGCATCCGTTCCAT
GGTTCCGCCGGACGGCAGCTGTTGCCCTCGGTTGATGTTCGCAGCTGAAG
CGATAACGCGGGAGGACCGATTATTGCGCGGTAATGAAGAAACAAGTCGG
GTTCCGCCGGACGGCAGCTGTTGCCCTCGGTTGATGTTCGCAGCTGAAGC
GATAACGCGGGAGGACCGATTATTGCGCGGTAATGAAGAAACAAGTCGGT
TGGACAGAGCGGACATTCGTCGGAAGAAGCATTCCACCCGTGCCTCTGTG
ATGCGAGAGCTAGCCGTTGCGAAGCGAGCCAGCACGGAAGAGGTTGGACA
GAGCGGACATTCGTCGGAAGAAGCATTCCACCCGTGCCTCTGTGATGCGA
GAGCTAGCCGTTGCGAAGCGAGCCAGCACGGAAGAGCGCATGGCGCTGGT
CGACGTTCGATCCGCGGTGGAACGACACGCCTACGCCCCCGGATGTCGCC
CGAAAGCCCCTCAAACTCCACCCTCGTGGCGAGAAGGCCACCGGGTCAGG
GGCAAGGGGAGGGCGACTGGGACGTCGAGGATACCATCCCCAACTCTCAC
CGGCGTGTTTGACGGGGCGTAGCGCATGGCGCTGGTCGACGTTCGATCCG
CGGTGGAACGACACGCCTACGCCCCCGGATGTCGCCCGAAAGCCCCTCAA
ACTCCACCCTCGTGGCGAGAAGGCCACCGGGTCAGGGGCAAGGGGAGGGC
GACTGGGACGTCGAGGATACCATCCCCAACTCTCACCGGCGTGTTTGACG
GGGCGTAG
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