mRNA_E-fasciculatus_F_contig1359.2671.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1359.2671.1 vs. uniprot
Match: D8LSX8_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX8_ECTSI) HSP 1 Score: 1472 bits (3811), Expect = 0.000e+0 Identity = 887/1196 (74.16%), Postives = 935/1196 (78.18%), Query Frame = 1
Query: 1 QAAVVLKQLALFLSKVRDAVQRMALVERHLSEQDNNIAEYRVTRSKAEGAVAALQGRQVETRLSSLEDDISGLKDSLGGQTPTQELTEEIATTMRTALTAEMQRSQARLDQEKRWMEAIIKKERKQHEDETAALKEQMDTLSQDVKAAETKWRRAEAAIRGIELTTASLERHLTDGEGGETARIRRELQDSEGSLQRRIEEVRASDLRRMEEISGEILRERENRLKDRAEVEQEVSNVRASLQRTEQYWHGRIHDRLNRLEGSMASTLSDHSHTRSSVDSIGSQLKQLQLEIQNACDTSRRVGQWASNGREEAPSRATGGHHMPILVQSVQSAAPPPQMAVSTLAAGCPKTTFKESSKVLPEEQAGGKGSTSTIAREEGVEST---MIPAVQACDD--THSECSSSLVFCSIPGRVARADATAGQENIDQDDNSGDVDSNSCPLRGGDPAPPESDQRSVENIVENGKDSGTPYPFKTGEGT---DEYGKLPKPPLLDKLHD---LPHDTSADTLRKNALAAVSLSAEEDAALAASEEEAGDGLPSQFTRAGSPCSSPSSVSSRGSXXXXXXXXXXXXXXXPDTPSVDSTEIPPADDPSAPENPSVATTPAEALDPNLSTQKLLGDSLGVSEAGKAEGTEHLGSDVSQPRMAGSTKSESSSDSSFSVDDDEAVVGQQRGLGLPETCDNNDSTKTKSSRPGVGNTCTPTSPLSIPTTSERGTCDEVSATTGVSTYDGRVHHNNAQRGPPVRAPPPAMPLGIRRQSMTAVSTGPAPVSFRDRSASKDSGVVTAQCEFCLRRYLKSAMSTHLQVCELRLVRCPFHCGVKVLVRNLEKHMGSCSMKESAESEGLVSSSATTTREPNLDATAGTRTEPPNETTRKTSDELSSHGKADEGNAQREGTLAIGPEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAGRTVTCMRCHESLPFHLVPSHGPKCKGKKGEGELSERVTAASPSGTSERSRGLPSGFQDRPPFEAAVDFRPPSLRSPVSSQSRSVFGGTPPRGGLSKPPNFSSAV---GSTLSSLSSSGPGDTGTAPKGLSGRSVATLQSPTVSPKAWHTSSRIGTVLTPGVRVPPSPPRLKDVRIWGTRQVTSWLREIMRPPRADIISKFHDSGVGGTALLGLTDRYLLHPTEGLGITDEVVRRQILDAVDSLKVDL 3546
+ AVVL+Q A FLSKVR+AVQRMALVER LSEQDN++ EYRVTRSKAEGAVAALQ RQVE RLS+LEDD+SGLK SLGG+TPTQEL+EEIATT+ TALTAEMQRSQAR DQ IRG+ELTT SLERHLTDGEGGETARIRRELQDSEGSLQRRIEEVRASDLRRMEEISGE+LRER NRLKDRAEVEQEVSN+RASLQRTE WHGRIHDRL+RLEGS+ASTLSDHSHTRSSV SIGSQLKQLQLEIQNA DTSRR GQWAS+ EEAPS A GHHMPIL QSVQSAA PPQ STLAA PKT +ES +VLPEEQ G GST+TIA EEGVES MIPAVQACDD TH CSS++ CS+PGRVA ADATAGQENIDQDDNSGDVD+NS LR D APPES+QRSV ++V KD PYPFKTGEG ++ GKL +PP D+L D + H +SADTLRK+ALAAVS SAEEDA LAAS EEAGDG PSQ R SPC+SPSSVSS GS XXXXXX TPSVDST+ P A DP E P ATTPAEALD N+S KLLGD LG S+ GK TE GSDVSQ RMA STKS SSSDSSFSVDDDEAVVGQQRGLGLPETCDN DS SSRPGVG TC PTS S PTTSERGTCD+VSAT GVSTY GRVHH N Q+GPP RAP P MP RR+S+ AVSTGPAPVSFRDRSASKDSGVVTAQCEFCLRRYLKSAMSTHLQVCELRLVRCPF CGVKVLVRNLEKHMGSCSMKES ES G+V +SAT TR NLDATAGTR EP NETTRK DEL+SHG DE NAQ+ G LAIGP P XXXXXXXXXXXXXXXXXXXXX DAGRTVTCMRCHESLPFHLVPSHGPKCKGKKGEGEL R TAASPSGTSERSRG PSGFQD PPF AAV FRPPSLRSPVSSQSRS GGTP GSTLS LSSSGPGDTG PK SGRSV T SP VSPKAWH SSRIGTVLTPGVRVPPSPPRLKDVR WGTRQVTSWLREIMRPPRADIISKFHDSGV GTALL +TDRYLLHPTEGLGITDEVVRRQIL+A+D LKV L
Sbjct: 3 EVAVVLRQRAFFLSKVREAVQRMALVERRLSEQDNDLTEYRVTRSKAEGAVAALQDRQVEVRLSNLEDDLSGLKASLGGRTPTQELSEEIATTITTALTAEMQRSQARSDQ-----------------------------------------------IRGVELTTVSLERHLTDGEGGETARIRRELQDSEGSLQRRIEEVRASDLRRMEEISGEVLRERGNRLKDRAEVEQEVSNIRASLQRTEHSWHGRIHDRLDRLEGSVASTLSDHSHTRSSVTSIGSQLKQLQLEIQNARDTSRRTGQWASDRHEEAPSLAIDGHHMPILAQSVQSAARPPQTTASTLAADSPKTALEESGEVLPEEQDGATGSTNTIATEEGVESATGVMIPAVQACDDQPTHVGCSSAVGLCSMPGRVATADATAGQENIDQDDNSGDVDNNSFSLRDADSAPPESNQRSVGSVVNTDKDIEAPYPFKTGEGIGTPEKNGKLTEPPPADRLRDHRKVIHTSSADTLRKSALAAVSFSAEEDAVLAASAEEAGDGRPSQSIRGRSPCASPSSVSSCGSSAPSXXXXXXSPLPLLHTPSVDSTDAPQAGDPGGAEKPFAATTPAEALDLNISPPKLLGDGLGASDKGKLADTEAGGSDVSQSRMARSTKSGSSSDSSFSVDDDEAVVGQQRGLGLPETCDNIDS----SSRPGVGKTCAPTSSRSTPTTSERGTCDDVSATAGVSTYGGRVHHKNPQKGPPPRAPRPEMPSETRRKSVAAVSTGPAPVSFRDRSASKDSGVVTAQCEFCLRRYLKSAMSTHLQVCELRLVRCPFQCGVKVLVRNLEKHMGSCSMKESVESGGVVDASATATRVRNLDATAGTRVEPHNETTRKKGDELASHG--DEANAQQGGALAIGPGPEPXXXXXXXXXXXXXXXXXXXXX----------------DAGRTVTCMRCHESLPFHLVPSHGPKCKGKKGEGELGARATAASPSGTSERSRGPPSGFQDPPPFGAAVGFRPPSLRSPVSSQSRSGVGGTPXXXXXXXXXXXXXXXXTHGSTLSPLSSSGPGDTGAVPKISSGRSVVTPHSPAVSPKAWHASSRIGTVLTPGVRVPPSPPRLKDVRAWGTRQVTSWLREIMRPPRADIISKFHDSGVDGTALLSVTDRYLLHPTEGLGITDEVVRRQILEAMDFLKVGL 1129
BLAST of mRNA_E-fasciculatus_F_contig1359.2671.1 vs. uniprot
Match: A0A6H5L2E5_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E5_9PHAE) HSP 1 Score: 1412 bits (3654), Expect = 0.000e+0 Identity = 898/1376 (65.26%), Postives = 958/1376 (69.62%), Query Frame = 1
Query: 1 QAAVVLKQLALFLSKVRDAVQRMALVERHLSEQDNNIAEYRVTRSKAEGAVAALQGRQVETRLSSLEDDISGLKDSLGGQTPTQELTEEIATTMRTALTAEMQRSQARLDQEKRWMEAIIKKERKQHEDETAALKEQMDTLSQDVKAAETKWRRAEAA-------------------------------------------------------------------------------IRGIELTTASLERHLTDGEGGETARIRRELQDSEGSLQRRIEEVRASDLRRMEEISGEILRERENRLKDRAEV-----------------------------------------------------EQEVSNVRASLQRTEQYWHGRIHDRLNRLEGSMASTLSDHSHTRSSVDSIGSQLKQLQLEIQNACDTSRRVGQWASNGREEAPSRATGGHHMPILVQSVQSAAPPPQMAVSTLAAGCPKTTFKESSKVLPEEQAGGKGSTSTIAREEGVEST---MIPAVQACDD--THSECSSSLVFCSIPGRVARADATAGQENIDQDDNSGDVDSNSCPLRGGDPAPPESDQRSVENIVENGKDSGTPYPFKTGEGT---DEYGKLPKPPLLDKLH---DLPHDTSADTLRKNALAAVSLSAEEDAALAASEEEAGDGLPSQFTRAGSPCSSPSSVSSRGSXXXXXXXXXXXXXXXPDTPSVDSTEIPPADDPSAPENPSVATTPAEALDPNLSTQKLLGDSLGVSEAGKAEGTEHLGSDVSQPRMAGSTKSESSSDSSFSVDDDEAVVGQQRGLGLPETCDNNDSTKTKSSRPGVGNTCTPTSPLSIPTTSERGTCDEVSATTGVSTYDGRVHHNNAQRGPPVRAPPPAMPLGIRRQSMTAVSTGPAPVSFRDRSASK------------------------------------------------DSGVVTAQCEFCLRRYLKSAMSTHLQVCELRLVRCPFHCGVKVLVRNLEKHMGSCSMKESAESEGLVSSSATTTREPNLDATAGTRTEPPNETTRKTSDELSSHGKADEGNAQREGTLAIGPEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAGRTVTCMRCHESLPFHLVPSHGPKCKGKKGEGELSERVTAASPSGTSERSRGLPSGFQDRPPFEAAVDFRPPSLRSPVSSQSRSVFGGTPPRGGLSKPPNFSSAVG---STLSSLSSSGPGDTGTAPKGLSGRSVATLQSPTVSPKAWHTSSRIGTVLTPGVRVPPSPPRLKDVRIWGTRQVTSWLREIMRPPRADIISKFHDSGVGGTALLGLTDRYLLHPTEGLGITDEVVRRQILDAVDSLKVDL 3546
+ AVVL+Q A FLSKVR AVQRMALVER LSEQDN++ EYRVTRSKAEGAVAAL+GRQ E+ATTM+TALTAEMQRSQA+LDQ+KRWMEAI+KKERKQHED A KEQMDTLSQ VK AETKWRRAEAA IRG+ELTTASLERHLT GEG ETARIRRELQDSEGSLQRRIEEVRASD+RRMEEISGE+LRERENRLKDRAEV E+EVSNVRASL+RTEQYWHGRIHDRL+RLEGSMASTLSDHSHT+S V SIGSQLKQLQLEIQNA DT RR GQWAS+ R EAPSRA G HH PIL Q VQSAA P Q STLAA PKT +ES +VLPEEQ G +GST+TIAREEGVEST MIPAVQACDD T ECSS++ CS+PG V ADATAGQ +IDQDD GDVD+ SCPLR GD AP +S QRSV ++V+NGKDS T YPFKTGEGT ++ G LP+PP +D+LH H +SADTLR ALAAVS SAEEDAALAAS EE GDG PSQ R SP SSPSSV S G XXXXXXXXXXXXXXX TPSV+ST P ADDP E AT+PAEALDPN++ KLLGD LG S++ K TE GSDVSQ RMA STK SSSDSSFSVDDDEAVVGQQRGLGL ETCDN+ ST T +SRPG G TC PTS LS TTSERGTCD+VSAT GVSTY GRVHH N Q+GPP RA MPL +RR+SM AVSTGPAPVSFRDRSASK DSGVVTAQCEFCLRRYLKSAMSTHLQVCELRLVRCPF CGVKVLVRNLEKHMGSCSMKESAESEG+V++SAT TR NLDATA TR PPNETTRK DE +SHG+ DEGNA++ G LAIGP XXXXXXXXXXXXXXXX A RTVTCMRCHESLPFHLVPSHGPKCKGKKGEGEL R TA SPSGTSER +G PSGF PPF AAVDFRPPSLRSPVSSQSRS GG P RGGLS PP SSAVG STLSSLSSSGPGDTG PK SGRSV T SP VSPKAWH SSRIGTVLTPGVRVPPSPPRLKDVR WGTRQVTSWLREIMRPPRADIISKFHDSGV GTALL +TDRYLLHPTEGLGITDEVVRRQIL+A+DSLKV L
Sbjct: 3 EVAVVLRQRAFFLSKVRGAVQRMALVERRLSEQDNDLTEYRVTRSKAEGAVAALRGRQ------------------------------ELATTMKTALTAEMQRSQAKLDQDKRWMEAILKKERKQHEDVMVAWKEQMDTLSQQVKEAETKWRRAEAADYGMRRNSIPVRWKHDTVAVHDSIQCYVASARVNALISEAKQTASSRWPSEPISNTSSQRMIETPHAPLFTFARCTENQIRGVELTTASLERHLTGGEGSETARIRRELQDSEGSLQRRIEEVRASDVRRMEEISGEVLRERENRLKDRAEVNRDSLWRHQTTWFTGSGKINERDTKPATMAHFRSVYPRAELSRMARDMRSVMVEKEVSNVRASLERTEQYWHGRIHDRLDRLEGSMASTLSDHSHTQSLVTSIGSQLKQLQLEIQNARDTRRRAGQWASDRRGEAPSRAIGNHHTPILAQVVQSAARPSQTTASTLAADSPKTALEESGEVLPEEQDGARGSTNTIAREEGVESTTGAMIPAVQACDDQPTPLECSSAVGLCSMPGGVTPADATAGQGSIDQDDYLGDVDNKSCPLRDGDSAPFKSGQRSVGSVVDNGKDSETQYPFKTGEGTGTPEQRGTLPEPPPVDRLHVHRKAIHTSSADTLR--ALAAVSFSAEEDAALAASAEEVGDGHPSQLIRGPSPRSSPSSVPSCGXXXXXXXXXXXXXXXXXHTPSVNSTGAPQADDPGGAEKYFAATSPAEALDPNVAPPKLLGDGLGASDSSKIADTEAGGSDVSQSRMAASTKPGSSSDSSFSVDDDEAVVGQQRGLGLRETCDNDHSTPTTTSRPGGGKTCAPTSSLSTSTTSERGTCDDVSATPGVSTYGGRVHHKNPQKGPPPRAXXXEMPLDMRRKSMAAVSTGPAPVSFRDRSASKVTGLVRTIFAETRRAAFSARIPTKLIVLFAEVTTEPLALRCMPVVSWQDSGVVTAQCEFCLRRYLKSAMSTHLQVCELRLVRCPFQCGVKVLVRNLEKHMGSCSMKESAESEGVVNASATPTRVRNLDATASTRAGPPNETTRKKGDEHASHGETDEGNARQGGVLAIGPX------------------------XXXXXXXXXXXXXXXXXADRTVTCMRCHESLPFHLVPSHGPKCKGKKGEGELGARATAGSPSGTSERWQGPPSGFHYPPPFGAAVDFRPPSLRSPVSSQSRSGVGGNPLRGGLSTPPILSSAVGTHGSTLSSLSSSGPGDTGAVPKVSSGRSVVTPCSPAVSPKAWHASSRIGTVLTPGVRVPPSPPRLKDVRAWGTRQVTSWLREIMRPPRADIISKFHDSGVDGTALLSVTDRYLLHPTEGLGITDEVVRRQILEAMDSLKVGL 1322 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1359.2671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1359.2671.1 >prot_E-fasciculatus_F_contig1359.2671.1 ID=prot_E-fasciculatus_F_contig1359.2671.1|Name=mRNA_E-fasciculatus_F_contig1359.2671.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=1161bp MALVERHLSEQDNNIAEYRVTRSKAEGAVAALQGRQVETRLSSLEDDISGback to top mRNA from alignment at E-fasciculatus_F_contig1359:1877..9933- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1359.2671.1 ID=mRNA_E-fasciculatus_F_contig1359.2671.1|Name=mRNA_E-fasciculatus_F_contig1359.2671.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=8057bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1359:1877..9933- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1359:1877..9933- >mRNA_E-fasciculatus_F_contig1359.2671.1 ID=mRNA_E-fasciculatus_F_contig1359.2671.1|Name=mRNA_E-fasciculatus_F_contig1359.2671.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=6966bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1359:1877..9933- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |