mRNA_E-fasciculatus_F_contig13588.2670.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13588.2670.1
Unique NamemRNA_E-fasciculatus_F_contig13588.2670.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13588.2670.1 vs. uniprot
Match: D7G485_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G485_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 9.510e-46
Identity = 95/132 (71.97%), Postives = 98/132 (74.24%), Query Frame = 1 
Query:    1 LAALADALAGALGSVVAVAVFYPIDIAKTRAQASSRITTRNRHDHDESSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAWFRSRTLAALLSIVRTEGGLTRLYEGIEAKVLQALLGSFVYFYAYAFIK 396
            LAAL+DALAGALGSVVAVAVFYPIDIAKTRAQASS +TTR+RHDHDESS                                R WFRSRTLAALLSIVRTEGGLTRLYEGIEAKVLQALLGSFVYFYAYAFIK
Sbjct:   40 LAALSDALAGALGSVVAVAVFYPIDIAKTRAQASSPVTTRSRHDHDESSGGHGSSTEESSTAPEGGRVGSSNTALAGDGRRRVWFRSRTLAALLSIVRTEGGLTRLYEGIEAKVLQALLGSFVYFYAYAFIK 171
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BLAST of mRNA_E-fasciculatus_F_contig13588.2670.1 vs. uniprot
Match: A0A835YZE1_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZE1_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 3.110e-12
Identity = 64/132 (48.48%), Postives = 78/132 (59.09%), Query Frame = 1 
Query:    1 LAALADALAGALGSVVAVAVFYPIDIAKTRAQASSRITTRNRHDHDESSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAWFRSRTLAALLSIVRTEGGLTRLYEGIEAKVLQALLGSFVYFYAYAFIK 396
            +AALADALAG++GS +A  +F+P+D AKTR QAS          H  SS      XXXXXXXXXXX               R    SRTLAALL +   EG  + L+ G++AKVL AL   F+YFYAYAF+K
Sbjct:    1 MAALADALAGSIGSCIAAILFFPLDTAKTRVQAS----------HSGSSDTDGSGXXXXXXXXXXXSAVERSQRSDAAV--RRVLGSRTLAALLDVYTREGP-SALFRGLDAKVLSALSSGFIYFYAYAFLK 119
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13588.2670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G485_ECTSI9.510e-4671.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YZE1_9STRA3.110e-1248.48Mitochondrial carrier domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13588contigE-fasciculatus_F_contig13588:258..653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.0
Seed ortholog evalue1.2e-38
Seed eggNOG ortholog2880.D7G485
KEGG koko:K13354
KEGG TC2.A.29.20.1
KEGG Pathwayko04146,map04146
EggNOG free text desc.Belongs to the allantoicase family
EggNOG OGsCOG4266@1,KOG0769@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categorychloroplast
Exons1
Model size396
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927855.2282503-CDS-E-fasciculatus_F_contig13588:257..6531622927855.2282503-CDS-E-fasciculatus_F_contig13588:257..653Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13588 258..653 -
1695995724.797875-CDS-E-fasciculatus_F_contig13588:257..6531695995724.797875-CDS-E-fasciculatus_F_contig13588:257..653Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13588 258..653 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13588.2670.1prot_E-fasciculatus_F_contig13588.2670.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13588 258..653 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13588.2670.1

>prot_E-fasciculatus_F_contig13588.2670.1 ID=prot_E-fasciculatus_F_contig13588.2670.1|Name=mRNA_E-fasciculatus_F_contig13588.2670.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=132bp
LAALADALAGALGSVVAVAVFYPIDIAKTRAQASSRITTRNRHDHDESSG
GHDSSTEEASTASEGGKVSSGSVARGGGGRRRAWFRSRTLAALLSIVRTE
GGLTRLYEGIEAKVLQALLGSFVYFYAYAFIK
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mRNA from alignment at E-fasciculatus_F_contig13588:258..653-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13588.2670.1 ID=mRNA_E-fasciculatus_F_contig13588.2670.1|Name=mRNA_E-fasciculatus_F_contig13588.2670.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=396bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13588:258..653- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGGCCGCTCTCGCGGACGCACTTGCAGGAGCTCTGGGCAGTGTCGTGGC
GGTTGCCGTTTTCTACCCTATCGATATCGCAAAGACAAGAGCGCAGGCAT
CGTCGCGCATCACTACGCGCAATCGTCATGATCATGATGAGAGTAGCGGT
GGACACGATAGCAGTACGGAGGAAGCTTCCACCGCATCAGAGGGTGGAAA
AGTCAGCAGCGGTAGCGTGGCGCGAGGGGGAGGCGGTCGGCGGCGGGCGT
GGTTCCGGAGCCGAACCCTGGCCGCGCTGTTGTCCATCGTTAGGACGGAG
GGGGGCTTGACGAGGCTGTACGAGGGCATCGAGGCGAAGGTGCTGCAGGC
GCTGCTGGGAAGCTTCGTCTACTTTTACGCTTACGCTTTCATCAAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13588:258..653-

>mRNA_E-fasciculatus_F_contig13588.2670.1 ID=mRNA_E-fasciculatus_F_contig13588.2670.1|Name=mRNA_E-fasciculatus_F_contig13588.2670.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=792bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13588:258..653- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGGCCGCTCTCGCGGACGCACTTGCAGGAGCTCTGGGCAGTGTCGTGGC
GGTTGCCGTTTTCTACCCTATCGATATCGCAAAGACAAGAGCGCAGGCAT
CGTCGCGCATCACTACGCGCAATCGTCATGATCATGATGAGAGTAGCGGT
GGACACGATAGCAGTACGGAGGAAGCTTCCACCGCATCAGAGGGTGGAAA
AGTCAGCAGCGGTAGCGTGGCGCGAGGGGGAGGCGGTCGGCGGCGGGCGT
GGTTCCGGAGCCGAACCCTGGCCGCGCTGTTGTCCATCGTTAGGACGGAG
GGGGGCTTGACGAGGCTGTACGAGGGCATCGAGGCGAAGGTGCTGCAGGC
GCTGCTGGGAAGCTTCGTCTACTTTTACGCTTACGCTTTCATCAAGCTGG
CCGCTCTCGCGGACGCACTTGCAGGAGCTCTGGGCAGTGTCGTGGCGGTT
GCCGTTTTCTACCCTATCGATATCGCAAAGACAAGAGCGCAGGCATCGTC
GCGCATCACTACGCGCAATCGTCATGATCATGATGAGAGTAGCGGTGGAC
ACGATAGCAGTACGGAGGAAGCTTCCACCGCATCAGAGGGTGGAAAAGTC
AGCAGCGGTAGCGTGGCGCGAGGGGGAGGCGGTCGGCGGCGGGCGTGGTT
CCGGAGCCGAACCCTGGCCGCGCTGTTGTCCATCGTTAGGACGGAGGGGG
GCTTGACGAGGCTGTACGAGGGCATCGAGGCGAAGGTGCTGCAGGCGCTG
CTGGGAAGCTTCGTCTACTTTTACGCTTACGCTTTCATCAAG
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