mRNA_E-fasciculatus_F_contig13584.2669.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13584.2669.1
Unique NamemRNA_E-fasciculatus_F_contig13584.2669.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13584.2669.1 vs. uniprot
Match: D7FWT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT6_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.120e-19
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 MNQMNQDIHFSAKHSEYVSAIHDNAEKFDPRAEEAFKYVQ 120
            MNQMNQDIHFSAKHS+YVS+IHDNAEKFDPRAEEAFKYVQ
Sbjct:    1 MNQMNQDIHFSAKHSQYVSSIHDNAEKFDPRAEEAFKYVQ 40
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13584.2669.1 vs. uniprot
Match: A0A6H5JNE7_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE7_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.400e-14
Identity = 36/40 (90.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 MNQMNQDIHFSAKHSEYVSAIHDNAEKFDPRAEEAFKYVQ 120
            MNQMNQDIH S K SEYVS IHDNAEKFDPRAEEAFKYVQ
Sbjct:  295 MNQMNQDIHSSVKDSEYVSQIHDNAEKFDPRAEEAFKYVQ 334
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13584.2669.1 vs. uniprot
Match: A0A6H5JNL8_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNL8_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.040e-12
Identity = 34/40 (85.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 MNQMNQDIHFSAKHSEYVSAIHDNAEKFDPRAEEAFKYVQ 120
            MNQ+NQDIH S K S YVS IHDNAEKFDPRAEEAFKYVQ
Sbjct:  239 MNQINQDIHSSVKDSGYVSQIHDNAEKFDPRAEEAFKYVQ 278
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13584.2669.1 vs. uniprot
Match: D7G0K9_ECTSI (Phosphate transporter n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K9_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 3.680e-12
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 MNQMNQDIHFSAKHSEYVSAIHDNAEKFDPRAEEAFKYVQ 120
            +NQ+N+D+H S K SEYVS IHDNAE+FDPRAEEAFKYVQ
Sbjct:  296 INQLNKDVHSSVKESEYVSQIHDNAEQFDPRAEEAFKYVQ 335
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13584.2669.1 vs. uniprot
Match: D7FWT9_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT9_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 6.870e-12
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 MNQMNQDIHFSAKHSEYVSAIHDNAEKFDPRAEEAFKYVQ 120
            MNQMNQDI+ S K SEYV+ IHDNAEKFDPR EE FKYVQ
Sbjct:  306 MNQMNQDIYSSVKDSEYVNQIHDNAEKFDPRTEEVFKYVQ 345
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13584.2669.1 vs. uniprot
Match: D7FZJ7_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ7_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 2.080e-7
Identity = 23/38 (60.53%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    7 QMNQDIHFSAKHSEYVSAIHDNAEKFDPRAEEAFKYVQ 120
            Q++QD+H + K ++YV AIH+NAE+ DPR E+AFKYVQ
Sbjct:  298 QLDQDVHATVKDNDYVDAIHENAERSDPRTEQAFKYVQ 335
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13584.2669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FWT6_ECTSI1.120e-1995.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNE7_9PHAE3.400e-1490.00Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
A0A6H5JNL8_9PHAE1.040e-1285.00Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7G0K9_ECTSI3.680e-1277.50Phosphate transporter n=2 Tax=Ectocarpus siliculos... [more]
D7FWT9_ECTSI6.870e-1280.00Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D7FZJ7_ECTSI2.080e-760.53Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13584contigE-fasciculatus_F_contig13584:2391..2510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue3.2e-11
Seed eggNOG ortholog2880.D7G0K8
Preferred namePHO89
KEGG koko:K01280,ko:K03306,ko:K14640
KEGG TC2.A.20,2.A.20.2
GOsGO:0003674,GO:0005215,GO:0005315,GO:0005436,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006817,GO:0006820,GO:0008150,GO:0008324,GO:0012505,GO:0015075,GO:0015077,GO:0015081,GO:0015291,GO:0015293,GO:0015294,GO:0015318,GO:0015319,GO:0015370,GO:0015672,GO:0015698,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0031226,GO:0034220,GO:0035435,GO:0035725,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098655,GO:0098656,GO:0098660,GO:0098661,GO:0098662
EggNOG free text desc.inorganic phosphate transmembrane transporter activity
EggNOG OGsCOG0306@1,KOG2493@2759
EC3.4.14.10
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko02000,ko03110
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_001230.1
Exons1
Model size120
Cds size120
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927855.1896524-CDS-E-fasciculatus_F_contig13584:2390..25101622927855.1896524-CDS-E-fasciculatus_F_contig13584:2390..2510Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13584 2391..2510 -
1695995724.7815354-CDS-E-fasciculatus_F_contig13584:2390..25101695995724.7815354-CDS-E-fasciculatus_F_contig13584:2390..2510Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13584 2391..2510 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13584.2669.1prot_E-fasciculatus_F_contig13584.2669.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13584 2391..2510 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13584.2669.1

>prot_E-fasciculatus_F_contig13584.2669.1 ID=prot_E-fasciculatus_F_contig13584.2669.1|Name=mRNA_E-fasciculatus_F_contig13584.2669.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=40bp
MNQMNQDIHFSAKHSEYVSAIHDNAEKFDPRAEEAFKYVQ
back to top

mRNA from alignment at E-fasciculatus_F_contig13584:2391..2510-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13584.2669.1 ID=mRNA_E-fasciculatus_F_contig13584.2669.1|Name=mRNA_E-fasciculatus_F_contig13584.2669.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=120bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13584:2391..2510- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAACCAGATGAACCAGGACATCCACTTCAGCGCGAAGCACTCGGAGTA
CGTGAGCGCCATCCACGACAACGCCGAGAAATTCGACCCCCGCGCGGAGG
AGGCCTTCAAGTACGTGCAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13584:2391..2510-

>mRNA_E-fasciculatus_F_contig13584.2669.1 ID=mRNA_E-fasciculatus_F_contig13584.2669.1|Name=mRNA_E-fasciculatus_F_contig13584.2669.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=240bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13584:2391..2510- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAACCAGATGAACCAGGACATCCACTTCAGCGCGAAGCACTCGGAGTA
CGTGAGCGCCATCCACGACAACGCCGAGAAATTCGACCCCCGCGCGGAGG
AGGCCTTCAAGTACGTGCAGATGAACCAGATGAACCAGGACATCCACTTC
AGCGCGAAGCACTCGGAGTACGTGAGCGCCATCCACGACAACGCCGAGAA
ATTCGACCCCCGCGCGGAGGAGGCCTTCAAGTACGTGCAG
back to top