mRNA_E-fasciculatus_F_contig13583.2668.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13583.2668.1
Unique NamemRNA_E-fasciculatus_F_contig13583.2668.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13583.2668.1 vs. uniprot
Match: D8LBU4_ECTSI (Carboxypeptidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBU4_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 2.840e-42
Identity = 72/76 (94.74%), Postives = 72/76 (94.74%), Query Frame = 1
Query:    1 GNEAWTLSLDWDGGDGFRAAPQNEWSTDTTAAGLSRSYGGLTFLQVYEAGHMVPMDQPEVALAMLNAFVHEDARPF 228
            GNEAWTLSLDW GGDGFRAAPQ EWSTD  AAGLSRSYGGLTFLQVYEAGHMVPMDQPEVALAMLNAFVHEDARPF
Sbjct:  376 GNEAWTLSLDWTGGDGFRAAPQIEWSTDAAAAGLSRSYGGLTFLQVYEAGHMVPMDQPEVALAMLNAFVHEDARPF 451          
BLAST of mRNA_E-fasciculatus_F_contig13583.2668.1 vs. uniprot
Match: A0A7S0MLB0_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MLB0_9CRYP)

HSP 1 Score: 91.7 bits (226), Expect = 4.500e-22
Identity = 43/69 (62.32%), Postives = 53/69 (76.81%), Query Frame = 1
Query:    1 GNEAWTLSLDWDGGDGFRAAPQNEWSTDTTAAGLSRSYGGLTFLQVYEAGHMVPMDQPEVALAMLNAFV 207
            GNEAWTL+L W G   F+A  ++ W+    AAGL+R+  GLTFL+V+EAGHMVPMDQPE ALAMLN F+
Sbjct:   61 GNEAWTLALPWPGQAQFQAEGEHPWTVGGRAAGLARTAAGLTFLRVFEAGHMVPMDQPEAALAMLNGFL 129          
BLAST of mRNA_E-fasciculatus_F_contig13583.2668.1 vs. uniprot
Match: A0A7S2S689_9STRA (Carboxypeptidase n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S689_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 4.260e-20
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 1
Query:    1 GNEAWTLSLDWDGGDGFRAAPQNEWSTDTTAAGLSRSYGGLTFLQVYEAGHMVPMDQPEVALAMLNAF 204
            GN AWTL+LDWDG  GF+AA +  W    +AAG  R Y   +FLQVY+AGHMVPMDQPE AL M N+F
Sbjct:  395 GNRAWTLALDWDGKQGFQAAEEKLWMVGNSAAGKYRHYSSFSFLQVYQAGHMVPMDQPENALEMFNSF 462          
BLAST of mRNA_E-fasciculatus_F_contig13583.2668.1 vs. uniprot
Match: A0A6U4Z6F3_HEMAN (Carboxypeptidase n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4Z6F3_HEMAN)

HSP 1 Score: 89.4 bits (220), Expect = 3.930e-19
Identity = 40/73 (54.79%), Postives = 52/73 (71.23%), Query Frame = 1
Query:    1 GNEAWTLSLDWDGGDGFRAAPQNEWSTDTTAAGLSRSYGGLTFLQVYEAGHMVPMDQPEVALAMLNAFVHEDA 219
            GN+AWTL+LDW G +GF     ++W      AGL+R++   TFLQVYEAGHMVP+DQPE AL+M+  FV  +A
Sbjct:  402 GNKAWTLALDWAGKEGFNGEGDHKWMVGGKEAGLARTFANFTFLQVYEAGHMVPLDQPERALSMVETFVRGEA 474          
BLAST of mRNA_E-fasciculatus_F_contig13583.2668.1 vs. uniprot
Match: A0A7S1VKX4_9STRA (Carboxypeptidase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VKX4_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 5.890e-19
Identity = 41/69 (59.42%), Postives = 52/69 (75.36%), Query Frame = 1
Query:    1 GNEAWTLSLDWDGGDGFRAAPQNEWSTDTTAAGLSRSYGGLTFLQVYEAGHMVPMDQPEVALAMLNAFV 207
            GN+AW+  L W GGD FRAAP+++W      +GL+R+  GLTFLQVY+AGHMVP D+PEVAL M+  FV
Sbjct:  469 GNKAWSYQLTWSGGDEFRAAPEHDWKD---GSGLARTANGLTFLQVYDAGHMVPSDKPEVALDMIRTFV 534          
BLAST of mRNA_E-fasciculatus_F_contig13583.2668.1 vs. uniprot
Match: A0A0D2UCB9_CAPO3 (Carboxypeptidase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UCB9_CAPO3)

HSP 1 Score: 88.6 bits (218), Expect = 6.810e-19
Identity = 43/70 (61.43%), Postives = 54/70 (77.14%), Query Frame = 1
Query:    1 GNEAWTLSLDWDGGDGFRAAPQNEWS-TDTTAAGLSRSYGGLTFLQVYEAGHMVPMDQPEVALAMLNAFV 207
            G++AWTL+LDW G  GF AA  + W+     AAGL+RSYGGLTFLQV++AGHMVP+DQP  ALAM+ + V
Sbjct:  378 GSKAWTLALDWAGNSGFNAAGDHTWNGAGGVAAGLARSYGGLTFLQVFKAGHMVPLDQPANALAMVASVV 447          
BLAST of mRNA_E-fasciculatus_F_contig13583.2668.1 vs. uniprot
Match: Q4QDZ7_LEIMA (Carboxypeptidase n=8 Tax=Leishmania TaxID=38568 RepID=Q4QDZ7_LEIMA)

HSP 1 Score: 87.8 bits (216), Expect = 1.330e-18
Identity = 41/69 (59.42%), Postives = 52/69 (75.36%), Query Frame = 1
Query:    1 GNEAWTLSLDWDGGDGFRAAPQNEWSTDTTAAGLSRSYGGLTFLQVYEAGHMVPMDQPEVALAMLNAFV 207
            GNEAW  +L W G D F AAP  E++     AGL RSYGGL+F+++Y+AGHMVPMDQPEVAL M++ F+
Sbjct:  388 GNEAWVKALRWFGTDRFNAAPNVEFAVSGRWAGLERSYGGLSFVRIYDAGHMVPMDQPEVALFMVHRFL 456          
BLAST of mRNA_E-fasciculatus_F_contig13583.2668.1 vs. uniprot
Match: A0A7S0W5S6_9CRYP (Carboxypeptidase n=2 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W5S6_9CRYP)

HSP 1 Score: 87.8 bits (216), Expect = 1.390e-18
Identity = 41/76 (53.95%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    1 GNEAWTLSLDWDGGDGFRAAPQNEWSTDTTAAGLSRSYGGLTFLQVYEAGHMVPMDQPEVALAMLNAFVHEDARPF 228
            GN+AWTL+L+W G  GF A   + WS     AGL+R++   TFLQVY+AGHMVP+DQPE AL+M+  FV    +PF
Sbjct:  403 GNKAWTLALEWGGSGGFNAEGDHAWSVGGEEAGLARTFSNFTFLQVYKAGHMVPLDQPERALSMVETFVRN--QPF 476          
BLAST of mRNA_E-fasciculatus_F_contig13583.2668.1 vs. uniprot
Match: A0A6S9GAZ6_HETAK (Carboxypeptidase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GAZ6_HETAK)

HSP 1 Score: 87.4 bits (215), Expect = 1.830e-18
Identity = 42/69 (60.87%), Postives = 48/69 (69.57%), Query Frame = 1
Query:    1 GNEAWTLSLDWDGGDGFRAAPQNEWSTDTTAAGLSRSYGGLTFLQVYEAGHMVPMDQPEVALAMLNAFV 207
            GN+AWTL+L W G   F  A   +W  D    G+ RS GGLTFLQV+EAGHMVPMDQP  ALA+L AFV
Sbjct:  387 GNKAWTLALGWAGQAAFNRAEDRDWVLDGERKGVVRSAGGLTFLQVFEAGHMVPMDQPAAALALLQAFV 455          
BLAST of mRNA_E-fasciculatus_F_contig13583.2668.1 vs. uniprot
Match: A0A640KFB8_LEITA (Carboxypeptidase n=1 Tax=Leishmania tarentolae TaxID=5689 RepID=A0A640KFB8_LEITA)

HSP 1 Score: 86.7 bits (213), Expect = 3.440e-18
Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = 1
Query:    1 GNEAWTLSLDWDGGDGFRAAPQNEWSTDTTAAGLSRSYGGLTFLQVYEAGHMVPMDQPEVALAMLNAFVHEDA 219
            GNEAW  +L W G D F AAP  E++     AG  R+YGGL+F+++Y+AGHMVPMDQPEVAL M++ F++  +
Sbjct:  388 GNEAWVKALQWFGADRFNAAPNVEFAVSGRWAGQERTYGGLSFVRIYDAGHMVPMDQPEVALFMVHRFLNNQS 460          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13583.2668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBU4_ECTSI2.840e-4294.74Carboxypeptidase n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A7S0MLB0_9CRYP4.500e-2262.32Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S2S689_9STRA4.260e-2061.76Carboxypeptidase n=1 Tax=labyrinthulid quahog para... [more]
A0A6U4Z6F3_HEMAN3.930e-1954.79Carboxypeptidase n=1 Tax=Hemiselmis andersenii Tax... [more]
A0A7S1VKX4_9STRA5.890e-1959.42Carboxypeptidase n=1 Tax=Grammatophora oceanica Ta... [more]
A0A0D2UCB9_CAPO36.810e-1961.43Carboxypeptidase n=1 Tax=Capsaspora owczarzaki (st... [more]
Q4QDZ7_LEIMA1.330e-1859.42Carboxypeptidase n=8 Tax=Leishmania TaxID=38568 Re... [more]
A0A7S0W5S6_9CRYP1.390e-1853.95Carboxypeptidase n=2 Tax=Hemiselmis tepida TaxID=4... [more]
A0A6S9GAZ6_HETAK1.830e-1860.87Carboxypeptidase n=1 Tax=Heterosigma akashiwo TaxI... [more]
A0A640KFB8_LEITA3.440e-1853.42Carboxypeptidase n=1 Tax=Leishmania tarentolae Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13583contigE-fasciculatus_F_contig13583:2697..3437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.4
Seed ortholog evalue1.7e-34
Seed eggNOG ortholog2880.D8LBU4
KEGG koko:K09645,ko:K13289,ko:K16298
KEGG Pathwayko04142,ko04614,map04142,map04614
EggNOG free text desc.PFAM Peptidase S10, serine carboxypeptidase
EggNOG OGsCOG2939@1,KOG1282@2759
EC3.4.16.5
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03110,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927855.1260827-CDS-E-fasciculatus_F_contig13583:2696..27681622927855.1260827-CDS-E-fasciculatus_F_contig13583:2696..2768Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13583 2697..2768 -
1695995724.7423804-CDS-E-fasciculatus_F_contig13583:2696..27681695995724.7423804-CDS-E-fasciculatus_F_contig13583:2696..2768Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13583 2697..2768 -
1622927855.1419024-CDS-E-fasciculatus_F_contig13583:3281..34371622927855.1419024-CDS-E-fasciculatus_F_contig13583:3281..3437Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13583 3282..3437 -
1695995724.7634337-CDS-E-fasciculatus_F_contig13583:3281..34371695995724.7634337-CDS-E-fasciculatus_F_contig13583:3281..3437Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13583 3282..3437 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13583.2668.1prot_E-fasciculatus_F_contig13583.2668.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13583 2697..3437 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13583.2668.1

>prot_E-fasciculatus_F_contig13583.2668.1 ID=prot_E-fasciculatus_F_contig13583.2668.1|Name=mRNA_E-fasciculatus_F_contig13583.2668.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=76bp
GNEAWTLSLDWDGGDGFRAAPQNEWSTDTTAAGLSRSYGGLTFLQVYEAG
HMVPMDQPEVALAMLNAFVHEDARPF
back to top

mRNA from alignment at E-fasciculatus_F_contig13583:2697..3437-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13583.2668.1 ID=mRNA_E-fasciculatus_F_contig13583.2668.1|Name=mRNA_E-fasciculatus_F_contig13583.2668.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=741bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13583:2697..3437- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCAACGAGGCGTGGACCCTCAGCCTGGACTGGGACGGGGGGGACGGCTT CCGAGCGGCCCCGCAGAACGAATGGAGCACGGACACCACCGCCGCCGGCC TGTCGAGGTCCTACGGGGGACTCACGTTCCTTCAAGTCTACGAGGCGGGA CACATGGTGGGTGTGGGTGGTGGTGTGTGCCGAATAACTATTTGCCGGGT TGGTTCCCTTTCTCCGCCCAGGGTACATCGAAACCGCAGCTACGAAGTAT TATGCATGCGGAACAGGCCTTTCCTAGGCACACAGCAGTTGGCGTCTCTT TCTTTTCGTGGTTGGGGTATCTTGTGGTGGCGAGGTTTGAATACTGTACG GTGATGCTCCGGGTCTCGGTTCCTTGTTTGTATCTACTTTTGCGGTGTTA GTGTTGTTGCAGTGCCGTCCTCCTCCTGGTCGACAGCCACAATTAGGCTA GAAGACGGGTAGCCGCTTAGGCTAGAAGACGGGTAGCCGCCCCAACTCAC AACTAACAAGGCTAGATATCACAGCCAATGCGGCTAGAAGTGTCAGTACA TGCGGACCTTCTTTTGAGGTGGCCATTTTTTTGGGGGGGGGGATTTTTCT CTTTTGCCTGCAAGGTGACTCGCTCTGACGACTTGCCTTTGCTGGGCTGT GCGGCGGGTGTTGCGACAGGTGCCCATGGACCAGCCGGAGGTTGCCCTGG CCATGCTCAACGCCTTCGTGCACGAAGACGCCCGCCCTTTC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13583:2697..3437-

>mRNA_E-fasciculatus_F_contig13583.2668.1 ID=mRNA_E-fasciculatus_F_contig13583.2668.1|Name=mRNA_E-fasciculatus_F_contig13583.2668.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=456bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13583:2697..3437- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCAACGAGGCGTGGACCCTCAGCCTGGACTGGGACGGGGGGGACGGCTT
CCGAGCGGCCCCGCAGAACGAATGGAGCACGGACACCACCGCCGCCGGCC
TGTCGAGGTCCTACGGGGGACTCACGTTCCTTCAAGTCTACGAGGCGGGA
CACATGGGCAACGAGGCGTGGACCCTCAGCCTGGACTGGGACGGGGGGGA
CGGCTTCCGAGCGGCCCCGCAGAACGAATGGAGCACGGACACCACCGCCG
CCGGCCTGTCGAGGTCCTACGGGGGACTCACGTTCCTTCAAGTCTACGAG
GCGGGACACATGGTGCCCATGGACCAGCCGGAGGTTGCCCTGGCCATGCT
CAACGCCTTCGTGCACGAAGACGCCCGCCCTTTCGTGCCCATGGACCAGC
CGGAGGTTGCCCTGGCCATGCTCAACGCCTTCGTGCACGAAGACGCCCGC
CCTTTC
back to top