mRNA_E-fasciculatus_F_contig13581.2666.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13581.2666.1
Unique NamemRNA_E-fasciculatus_F_contig13581.2666.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13581.2666.1 vs. uniprot
Match: D7G1W8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1W8_ECTSI)

HSP 1 Score: 251 bits (642), Expect = 3.000e-81
Identity = 129/132 (97.73%), Postives = 130/132 (98.48%), Query Frame = 2 
Query:   14 GLPIKIHRTSKRARKTTLWLKDADTLVWSSKRAMGSKQWHKQSLGGVTSVQAGKGGSDSLIIGSGESAPEDSCFSLCFPSVSMGFEAASELERDALVQGFAMLVEDIKAAADEQKYRDTEAAIFRDMASMGS 409
            GLPIKIHRTSKRARKTTLWLK ADTLVWSSKRA+GSKQWHKQSLGGVTSVQAGKGGSDSLIIGSGESAPEDSCFSLCFPSVSMGFEAASELERDALVQGFAMLVEDIKAAADEQKY DTEAAIFRDMASMGS
Sbjct:  217 GLPIKIHRTSKRARKTTLWLKGADTLVWSSKRAIGSKQWHKQSLGGVTSVQAGKGGSDSLIIGSGESAPEDSCFSLCFPSVSMGFEAASELERDALVQGFAMLVEDIKAAADEQKYGDTEAAIFRDMASMGS 348
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BLAST of mRNA_E-fasciculatus_F_contig13581.2666.1 vs. uniprot
Match: A0A7S2V636_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V636_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 7.980e-7
Identity = 32/73 (43.84%), Postives = 48/73 (65.75%), Query Frame = 2 
Query:  119 SKQWHKQSLGGVTSVQAGKGGSDSLIIGSGESAPEDSCFSLCFPSVSMGFEAASELERDALVQGFAMLVEDIK 337
            S++ ++  L  V  V+ GK  +  L  GSG    ED C SL  P++S+ FEA+S++ER+A+ QGFA+L+ DIK
Sbjct:  170 SRRAYQLDLSEVLFVEVGKQ-TPVLRTGSGAGVDEDHCLSLITPNMSVDFEASSKVEREAMAQGFALLINDIK 241
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13581.2666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1W8_ECTSI3.000e-8197.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2V636_9STRA7.980e-743.84Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13581contigE-fasciculatus_F_contig13581:20..1468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size428
Cds size426
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13581.2666.1prot_E-fasciculatus_F_contig13581.2666.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13581 20..1468 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927854.9584806-CDS-E-fasciculatus_F_contig13581:19..1851622927854.9584806-CDS-E-fasciculatus_F_contig13581:19..185Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13581 20..185 +
1695995724.6481767-CDS-E-fasciculatus_F_contig13581:19..1851695995724.6481767-CDS-E-fasciculatus_F_contig13581:19..185Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13581 20..185 +
1622927854.9701054-CDS-E-fasciculatus_F_contig13581:1035..11521622927854.9701054-CDS-E-fasciculatus_F_contig13581:1035..1152Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13581 1036..1152 +
1695995724.6578708-CDS-E-fasciculatus_F_contig13581:1035..11521695995724.6578708-CDS-E-fasciculatus_F_contig13581:1035..1152Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13581 1036..1152 +
1622927854.9811351-CDS-E-fasciculatus_F_contig13581:1325..14681622927854.9811351-CDS-E-fasciculatus_F_contig13581:1325..1468Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13581 1326..1468 +
1695995724.6685038-CDS-E-fasciculatus_F_contig13581:1325..14681695995724.6685038-CDS-E-fasciculatus_F_contig13581:1325..1468Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13581 1326..1468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13581.2666.1

>prot_E-fasciculatus_F_contig13581.2666.1 ID=prot_E-fasciculatus_F_contig13581.2666.1|Name=mRNA_E-fasciculatus_F_contig13581.2666.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=142bp
NAKNRTSDKDSPNVQAGEEDHPLAKGRRHAGVVLEARHGLEAVAQAEPRR
RDERAGRKGWFRLPDHRFRRVGPRRLVLLLVLPVRLDGLRGGKRAGARRS
RARVCDAGGGHQGGGGRAEVPRHRGGNFQRHGIDGFLIRNG*
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mRNA from alignment at E-fasciculatus_F_contig13581:20..1468+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13581.2666.1 ID=mRNA_E-fasciculatus_F_contig13581.2666.1|Name=mRNA_E-fasciculatus_F_contig13581.2666.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1449bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13581:20..1468+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AATGCCAAAAACAGGACTTCCGATAAAGATTCACCGAACGTCCAAGCGGG
CGAGGAAGACCACCCTTTGGCTAAAGGACGCCGACACGCTGGTGTGGTCC
TCGAAGCGCGCCATGGGCTCGAAGCAGTGGCACAAGCAGAGCCTCGGCGG
CGTGACGAGCGTGCAGGTGTGTACTGTAGCGGCTGAGCGAAGAGAACGCT
ACGAAAAGACCAAGCAGGAAAAAACGACCTCGTCGATCCTAATATTTCGA
TGATAGGCTAGATATTATGTGCTTCGGATCAACTACAAAATGTTTGATTG
GGAAGGGGGGCAGGGGGGAGGGAAAGAGGGAGCCGTGGAGAGGGAGACGG
AGAGGGGGACGGCAACCAGCTGACCATTCCTGAACTAATTGTTCGGACAA
TCCTTCGTCGCGAATGGGATGCTTAGTCCTTTATGATCAGACAGGCCATG
CCCCACCCACTACAGTTGTGTCACTGCGCCGTGTTTTCTCTTGCGTCTTC
TCGCATGAGGTTTTGGTCCATCGGCTATCTGTTAAAAGTGACGACGTCCA
ACTTTTTTGACTCTATGAACCACGCGTCTGTTTACAACAAGGTATCTAGT
ACTTAAGTATATGCTCTCCCCACCATCTCTTTCCTGGCAGATCTTTCTTA
CGCCCAATATGTTGTTGATATTTGTGGTGAGTTGACTATTTCCACACTAA
AAAGTGCTCTGGCCTCTCATCTTTGATGGCCTATCCCTGCGCTTGGCGGG
CACAAACACAGACCCTTGTGGAGACAGGCTCGCCTAATGAGAACATGCAA
TAGTCGTGCTCAGGGGAATGTTTGAACTTTTCTATTCAGAAACATTTCTA
CAGAGGACGTGCTGATGTAGTCCATTGCCCAACAGCTCTGTTCTATTGTG
TTGTTTTCTTGCACCGTTACGCGCTCAATTTTTCGCGAACATTTTGTTTC
ACTGCAATGCTCTTTGTTGCCTGCCCTATTTTTAAAACACTGTTCGATCT
GCGTGCTGCTACCAAGGCCGGAAAGGGTGGTTCCGACTCCCTGATCATCG
GTTCCGGCGAGTCGGCCCCAGAAGACTCGTGCTTCTCCTTGTGCTTCCCG
TCCGTCTCGATGGGCTTCGAGGCGGCAAGCGAGGTAAGAGAAATCCGTTC
CGTTGTCCTGAACAGCAGCGTTAAATAGTCAACACCATACGGCGGCGCAC
ACACACTGACAACCGAGAATCCACGAGTTTTCGTGCACTACTTTGTGGGT
GCGTTTCTCCTTTTTCACCTCTTTCGTCTTATTCTTGTTTCCGACGATCT
TGATAGCTGGAGCGAGACGCTCTCGTGCAAGGGTTTGCGATGCTGGTGGA
GGACATCAAGGCGGCGGCGGACGAGCAGAAGTACCGCGACACCGAGGCGG
CAATTTTCAGAGACATGGCATCGATGGGTTCTTGATCCGGAACGGATAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13581:20..1468+

>mRNA_E-fasciculatus_F_contig13581.2666.1 ID=mRNA_E-fasciculatus_F_contig13581.2666.1|Name=mRNA_E-fasciculatus_F_contig13581.2666.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=852bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13581:20..1468+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AATGCCAAAAACAGGACTTCCGATAAAGATTCACCGAACGTCCAAGCGGG
CGAGGAAGACCACCCTTTGGCTAAAGGACGCCGACACGCTGGTGTGGTCC
TCGAAGCGCGCCATGGGCTCGAAGCAGTGGCACAAGCAGAGCCTCGGCGG
CGTGACGAGCGTGCAGAATGCCAAAAACAGGACTTCCGATAAAGATTCAC
CGAACGTCCAAGCGGGCGAGGAAGACCACCCTTTGGCTAAAGGACGCCGA
CACGCTGGTGTGGTCCTCGAAGCGCGCCATGGGCTCGAAGCAGTGGCACA
AGCAGAGCCTCGGCGGCGTGACGAGCGTGCAGGCCGGAAAGGGTGGTTCC
GACTCCCTGATCATCGGTTCCGGCGAGTCGGCCCCAGAAGACTCGTGCTT
CTCCTTGTGCTTCCCGTCCGTCTCGATGGGCTTCGAGGCGGCAAGCGAGG
CCGGAAAGGGTGGTTCCGACTCCCTGATCATCGGTTCCGGCGAGTCGGCC
CCAGAAGACTCGTGCTTCTCCTTGTGCTTCCCGTCCGTCTCGATGGGCTT
CGAGGCGGCAAGCGAGCTGGAGCGAGACGCTCTCGTGCAAGGGTTTGCGA
TGCTGGTGGAGGACATCAAGGCGGCGGCGGACGAGCAGAAGTACCGCGAC
ACCGAGGCGGCAATTTTCAGAGACATGGCATCGATGGGTTCTTGATCCGG
AACGGATAGCTGGAGCGAGACGCTCTCGTGCAAGGGTTTGCGATGCTGGT
GGAGGACATCAAGGCGGCGGCGGACGAGCAGAAGTACCGCGACACCGAGG
CGGCAATTTTCAGAGACATGGCATCGATGGGTTCTTGATCCGGAACGGAT
AG
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