mRNA_E-fasciculatus_F_contig13576.2662.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13576.2662.1
Unique NamemRNA_E-fasciculatus_F_contig13576.2662.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13576.2662.1 vs. uniprot
Match: A0A6H5L1J3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1J3_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 4.000e-12
Identity = 38/46 (82.61%), Postives = 40/46 (86.96%), Query Frame = -3 
Query:  150 MTRRPAAS-SVLATLVLPATCGIPCLRQLHLLGFRYVHVFAAAVSP 284
            MTRRPAAS SVLATLVLPATCGIP LRQL LLGFRY H+  AAV+P
Sbjct:    1 MTRRPAASTSVLATLVLPATCGIPSLRQLPLLGFRYGHIVDAAVAP 46
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13576.2662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L1J3_9PHAE4.000e-1282.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13576contigE-fasciculatus_F_contig13576:2158..3603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-27_003260.1
Exons2
Model size1100
Cds size990
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13576.2662.1prot_E-fasciculatus_F_contig13576.2662.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13576 2267..3603 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927854.6932478-UTR-E-fasciculatus_F_contig13576:2157..22661622927854.6932478-UTR-E-fasciculatus_F_contig13576:2157..2266Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13576 2158..2266 +
1695995724.5515587-UTR-E-fasciculatus_F_contig13576:2157..22661695995724.5515587-UTR-E-fasciculatus_F_contig13576:2157..2266Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13576 2158..2266 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927854.710712-CDS-E-fasciculatus_F_contig13576:2266..23071622927854.710712-CDS-E-fasciculatus_F_contig13576:2266..2307Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13576 2267..2307 +
1695995724.5615659-CDS-E-fasciculatus_F_contig13576:2266..23071695995724.5615659-CDS-E-fasciculatus_F_contig13576:2266..2307Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13576 2267..2307 +
1622927854.7289786-CDS-E-fasciculatus_F_contig13576:2654..36031622927854.7289786-CDS-E-fasciculatus_F_contig13576:2654..3603Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13576 2655..3603 +
1695995724.5718284-CDS-E-fasciculatus_F_contig13576:2654..36031695995724.5718284-CDS-E-fasciculatus_F_contig13576:2654..3603Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13576 2655..3603 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13576.2662.1

>prot_E-fasciculatus_F_contig13576.2662.1 ID=prot_E-fasciculatus_F_contig13576.2662.1|Name=mRNA_E-fasciculatus_F_contig13576.2662.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=330bp
MWNRKSAVVTKLEGEKQQQQRRERSGTPVDVAGEGKECRRSQAVQVSPER
LKPPAASSSSTAAAAAVGNFEANSVEGSRYNSSLAGEVGGAWSGSLVGEE
EGDAVGEGTVCAVGEGGARGDGNRRLLRWRSIRRLQQHKSTTILSGDVGG
KSVDGGGKGMAASGSSTQSPSRLSLGRRGRGSTTAANSTGTAVAPAPAPA
ATRASGVCLNRRTIPPQHRGGYPDDHLATSSGNASPDSKAIGNNQSTTAT
AAAAPLMTSSLDDEKARKPESLVPSILLNYNGGGGGGDGSDREPVSPATS
IASEGGSAPGWAERAGLSGGVAVATSRTAG
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mRNA from alignment at E-fasciculatus_F_contig13576:2158..3603+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13576.2662.1 ID=mRNA_E-fasciculatus_F_contig13576.2662.1|Name=mRNA_E-fasciculatus_F_contig13576.2662.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1446bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13576:2158..3603+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTTGGTGAGAACACCAGAGCAAAGTTCAGACGTTAGGCCCAACTTACAG
CCACCGCACACGACTCCATGCCTTGGGAATGAAAGGGGCGTGGGCACCCG
TTTCTCGCCATGTGGAATCGTAAAAGTGCTGTGGTGACAAAGCTCGAAGG
GTAAGCCGGAGTGTTTTGCTCGCTCAGACAACCATTTTTTTTGGAACTAA
AAAGCAAGCAGCATCGGGTGGGGTTGGATATCGAGGGTCGAGCCGGCGAC
GCAATGGAAAGCGAGGAGAAGCTGCGCATGCTTGGCCGCTTACCTGAGCA
TTGCTCATCCCTCGCGGTGTGCTGTAGATGATCAGGCCTTGCGCTAGAGA
AGGAGAAACAGAGATAAATAGCGTTAGTTGGATTGCTTCCGCACGTGACG
CAGGCGACACCTTTACCTCCCGGATGAAACGCTCACACCCTCTTGCTGCT
GCTGCTCTTACCCCCCTTCCCTTCGTCGGCCGCCACGCGACGTCCAGGGA
GAAACAGCAGCAGCAAAGACGTGAACGTAGCGGAACCCCAGTAGATGTAG
CTGGCGAAGGCAAGGAATGCCGCAGGTCGCAGGCAGTACAAGTGTCGCCA
GAACGCTTGAAGCCGCCGGCCGCCTCGTCATCGTCAACCGCCGCCGCTGC
TGCTGTCGGCAATTTCGAAGCCAATTCTGTCGAGGGCAGCCGGTACAACA
GCAGTTTAGCCGGGGAGGTGGGCGGAGCTTGGAGTGGGAGTTTGGTAGGG
GAAGAAGAGGGCGATGCAGTCGGAGAGGGAACAGTGTGTGCGGTCGGAGA
GGGAGGCGCAAGAGGAGACGGCAACAGGAGGTTACTGAGGTGGCGGTCGA
TTCGGCGTCTACAGCAACACAAGTCCACCACCATCTTGTCTGGAGATGTC
GGCGGCAAGTCAGTCGACGGTGGAGGGAAGGGTATGGCCGCAAGCGGCAG
CAGCACGCAGTCGCCAAGTCGGCTGTCGCTCGGGCGCCGTGGCAGAGGAT
CGACGACGGCTGCAAACTCAACAGGGACGGCGGTGGCACCAGCACCAGCA
CCAGCAGCAACAAGAGCTTCGGGTGTTTGCTTGAACCGCCGCACAATTCC
CCCGCAACATCGAGGCGGCTACCCCGACGACCACCTTGCTACCAGCAGCG
GCAACGCTAGCCCCGACTCTAAGGCGATTGGCAACAACCAAAGCACCACC
GCAACAGCGGCGGCAGCACCCCTTATGACATCTTCGCTCGACGACGAAAA
GGCAAGAAAACCGGAAAGCCTTGTGCCCTCCATACTACTCAACTACAACG
GCGGCGGCGGCGGCGGCGACGGGAGCGACCGCGAGCCGGTGTCGCCGGCG
ACCTCCATCGCCTCGGAGGGCGGCAGTGCGCCCGGATGGGCAGAGCGGGC
GGGACTTTCCGGCGGGGTTGCCGTGGCCACCTCTAGAACGGCGGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13576:2158..3603+

>mRNA_E-fasciculatus_F_contig13576.2662.1 ID=mRNA_E-fasciculatus_F_contig13576.2662.1|Name=mRNA_E-fasciculatus_F_contig13576.2662.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1980bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13576:2158..3603+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTGGAATCGTAAAAGTGCTGTGGTGACAAAGCTCGAAGGATGTGGAAT
CGTAAAAGTGCTGTGGTGACAAAGCTCGAAGGGGAGAAACAGCAGCAGCA
AAGACGTGAACGTAGCGGAACCCCAGTAGATGTAGCTGGCGAAGGCAAGG
AATGCCGCAGGTCGCAGGCAGTACAAGTGTCGCCAGAACGCTTGAAGCCG
CCGGCCGCCTCGTCATCGTCAACCGCCGCCGCTGCTGCTGTCGGCAATTT
CGAAGCCAATTCTGTCGAGGGCAGCCGGTACAACAGCAGTTTAGCCGGGG
AGGTGGGCGGAGCTTGGAGTGGGAGTTTGGTAGGGGAAGAAGAGGGCGAT
GCAGTCGGAGAGGGAACAGTGTGTGCGGTCGGAGAGGGAGGCGCAAGAGG
AGACGGCAACAGGAGGTTACTGAGGTGGCGGTCGATTCGGCGTCTACAGC
AACACAAGTCCACCACCATCTTGTCTGGAGATGTCGGCGGCAAGTCAGTC
GACGGTGGAGGGAAGGGTATGGCCGCAAGCGGCAGCAGCACGCAGTCGCC
AAGTCGGCTGTCGCTCGGGCGCCGTGGCAGAGGATCGACGACGGCTGCAA
ACTCAACAGGGACGGCGGTGGCACCAGCACCAGCACCAGCAGCAACAAGA
GCTTCGGGTGTTTGCTTGAACCGCCGCACAATTCCCCCGCAACATCGAGG
CGGCTACCCCGACGACCACCTTGCTACCAGCAGCGGCAACGCTAGCCCCG
ACTCTAAGGCGATTGGCAACAACCAAAGCACCACCGCAACAGCGGCGGCA
GCACCCCTTATGACATCTTCGCTCGACGACGAAAAGGCAAGAAAACCGGA
AAGCCTTGTGCCCTCCATACTACTCAACTACAACGGCGGCGGCGGCGGCG
GCGACGGGAGCGACCGCGAGCCGGTGTCGCCGGCGACCTCCATCGCCTCG
GAGGGCGGCAGTGCGCCCGGATGGGCAGAGCGGGCGGGACTTTCCGGCGG
GGTTGCCGTGGCCACCTCTAGAACGGCGGGGGGAGAAACAGCAGCAGCAA
AGACGTGAACGTAGCGGAACCCCAGTAGATGTAGCTGGCGAAGGCAAGGA
ATGCCGCAGGTCGCAGGCAGTACAAGTGTCGCCAGAACGCTTGAAGCCGC
CGGCCGCCTCGTCATCGTCAACCGCCGCCGCTGCTGCTGTCGGCAATTTC
GAAGCCAATTCTGTCGAGGGCAGCCGGTACAACAGCAGTTTAGCCGGGGA
GGTGGGCGGAGCTTGGAGTGGGAGTTTGGTAGGGGAAGAAGAGGGCGATG
CAGTCGGAGAGGGAACAGTGTGTGCGGTCGGAGAGGGAGGCGCAAGAGGA
GACGGCAACAGGAGGTTACTGAGGTGGCGGTCGATTCGGCGTCTACAGCA
ACACAAGTCCACCACCATCTTGTCTGGAGATGTCGGCGGCAAGTCAGTCG
ACGGTGGAGGGAAGGGTATGGCCGCAAGCGGCAGCAGCACGCAGTCGCCA
AGTCGGCTGTCGCTCGGGCGCCGTGGCAGAGGATCGACGACGGCTGCAAA
CTCAACAGGGACGGCGGTGGCACCAGCACCAGCACCAGCAGCAACAAGAG
CTTCGGGTGTTTGCTTGAACCGCCGCACAATTCCCCCGCAACATCGAGGC
GGCTACCCCGACGACCACCTTGCTACCAGCAGCGGCAACGCTAGCCCCGA
CTCTAAGGCGATTGGCAACAACCAAAGCACCACCGCAACAGCGGCGGCAG
CACCCCTTATGACATCTTCGCTCGACGACGAAAAGGCAAGAAAACCGGAA
AGCCTTGTGCCCTCCATACTACTCAACTACAACGGCGGCGGCGGCGGCGG
CGACGGGAGCGACCGCGAGCCGGTGTCGCCGGCGACCTCCATCGCCTCGG
AGGGCGGCAGTGCGCCCGGATGGGCAGAGCGGGCGGGACTTTCCGGCGGG
GTTGCCGTGGCCACCTCTAGAACGGCGGGG
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