mRNA_E-fasciculatus_F_contig1357.2655.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1357.2655.1 vs. uniprot
Match: A0A6H5JNW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNW5_9PHAE) HSP 1 Score: 590 bits (1522), Expect = 2.280e-207 Identity = 350/397 (88.16%), Postives = 354/397 (89.17%), Query Frame = 3
Query: 60 MNMRYATRAAAAVGVFAASSGSIVREAFVAGPLFHPAAVRHRSXXXXXXXXXXXXXXXXXXXXXXRPTTTLPPRCRRSHGLVRRAAASPLRPTPT----RRRSGHRRPRDTAVTAMXXXXXXXXXXXVLGPLRPLSPTEEGGDVFNPNPLARNDPERARVNNLITTLAGTPMADWKPAVIDEYMESLLKRGIFRQTMDERLAKVRSGEEREALARVDSYMTGFLGHEWRKASRKKARGRGRRDVSVILSAAAEGPMELDDCVQTLGKADLLDSDLTEYVASLITAEERKCVKSVLLKVLKTVRDRIQAELTTGARPEIRTLARALAIEDGAQRKEFLQHAFPKLEELDEFVKFVEEGIDFLGDDFGFAVRTNMPQLHFDKMKAIYAEASAMRRKYLQ 1238
MNMRYATRAAAAVGVFAASSGSIVREAF+A PLFHPAAVRH S XXXXXXXXXXXXXXXXXXXXX RCRRSHGLVR AAASPLRPTPT RRRSGHRRPRD VTAM VLGPLRPLSPTE+GGDVFNPNPLARNDPERARVNNLIT LAGTPMA+WKPAVIDEYMESLLKRGIFRQTMDERLAKVRSGEEREALARVDSYMTGFLGHEWRKASRKK VSVILSAAAEGPMELDDCVQTLGKADLLDSDLTEYVASLITAEERKCVKSVLLKVLKTVRDRIQAEL GARPEIRTLARALAI+DGAQRKEFL HAFPKLEELDEFVKFVEEGIDFLGDDFGFAVRTNMPQ HFDKMKAIYAEASAMRR YLQ
Sbjct: 1 MNMRYATRAAAAVGVFAASSGSIVREAFLAPPLFHPAAVRHGSSXXXXXXXXXXXXXXXXXXXXXXXXX----RCRRSHGLVRCAAASPLRPTPTLSAARRRSGHRRPRDPTVTAMSAAADEGDGS-VLGPLRPLSPTEDGGDVFNPNPLARNDPERARVNNLITILAGTPMAEWKPAVIDEYMESLLKRGIFRQTMDERLAKVRSGEEREALARVDSYMTGFLGHEWRKASRKK--------VSVILSAAAEGPMELDDCVQTLGKADLLDSDLTEYVASLITAEERKCVKSVLLKVLKTVRDRIQAELRMGARPEIRTLARALAIKDGAQRKEFLLHAFPKLEELDEFVKFVEEGIDFLGDDFGFAVRTNMPQEHFDKMKAIYAEASAMRRMYLQ 384
BLAST of mRNA_E-fasciculatus_F_contig1357.2655.1 vs. uniprot
Match: D7FS73_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS73_ECTSI) HSP 1 Score: 488 bits (1255), Expect = 1.330e-168 Identity = 255/270 (94.44%), Postives = 257/270 (95.19%), Query Frame = 3
Query: 429 VLGPLRPLSPTEEGGDVFNPNPLARNDPERARVNNLITTLAGTPMADWKPAVIDEYMESLLKRGIFRQTMDERLAKVRSGEEREALARVDSYMTGFLGHEWRKASRKKARGRGRRDVSVILSAAAEGPMELDDCVQTLGKADLLDSDLTEYVASLITAEERKCVKSVLLKVLKTVRDRIQAELTTGARPEIRTLARALAIEDGAQRKEFLQHAFPKLEELDEFVKFVEEGIDFLGDDFGFAVRTNMPQLHFDKMKAIYAEASAMRRKYLQ 1238
VLGPLRPLSPTE+GGDVFNPNPLARNDPERARVNNLIT LAGTPMA+WKPAVIDEYMESLLKRGIFRQTMDERLAKVRSGEEREALARVDSYMTGFLGHEWRKASRKK VSVILSAAAEGPMELDDCVQTLGKADLLDSDLTEYVASLITAEERKCVKSVLLKVLKTVRDRIQAEL GARPEIRTLARALAIEDGAQRKEFLQHAFPKLEELDEFVKFVEEGIDFLGDDFGFAVRTNMPQ HFDKMKAIYAEASAMRR YLQ
Sbjct: 12 VLGPLRPLSPTEDGGDVFNPNPLARNDPERARVNNLITILAGTPMAEWKPAVIDEYMESLLKRGIFRQTMDERLAKVRSGEEREALARVDSYMTGFLGHEWRKASRKK--------VSVILSAAAEGPMELDDCVQTLGKADLLDSDLTEYVASLITAEERKCVKSVLLKVLKTVRDRIQAELRMGARPEIRTLARALAIEDGAQRKEFLQHAFPKLEELDEFVKFVEEGIDFLGDDFGFAVRTNMPQEHFDKMKAIYAEASAMRRMYLQ 273
BLAST of mRNA_E-fasciculatus_F_contig1357.2655.1 vs. uniprot
Match: A0A835Z8U9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8U9_9STRA) HSP 1 Score: 191 bits (485), Expect = 2.240e-52 Identity = 114/262 (43.51%), Postives = 162/262 (61.83%), Query Frame = 3
Query: 468 GGDVFNPNPLARNDPERARVNNLITTLAGTPMADWKPAVIDEYMESLLKRG--IFRQTMDERLAKVRSGEEREALARVDSYMTGFLGHEWRKASRKKARGRGRRDVSVILSAAAEGPMELDDCVQTLGKADLLDSDLTEYVASLITAEERKCV----KSVLLKVLKTVRDRIQAELTTGARPEIRTLARALAIEDGAQRKEFLQHAFPKLEELDEFVKFVEEGIDFLGDDFGFAVRTNMPQLHFDKMKAIYAEASAMRRKYL 1235
GGD+ + ++ + +R R+NN I+ L P + W P V++ + LL+ G +++QTM R ++ R G+ER L RV++++ G+L + R+ASR K V +L AAA GP ELD + L + +DSDL EYV L+ AEE K + S LL VL+ VRDR+QAEL TG+RPEIR LA AL + QR ++L+ AF KLE+L+EF+ FV EG+ + ++ G VR+NMPQ + DKMK I EA MR YL
Sbjct: 83 GGDIKSV--ISGGEEDRIRINNFISYLCNLPQSAWSPDVLESHTPDLLRDGSAVYKQTMALRASRARDGDERAKLERVEAFLNGYLQQQRRRASRVK--------VQEMLGAAAVGPQELDAAMAELSASKGIDSDLVEYVTGLVEAEEMKRMDTDGSSRLLAVLRAVRDRLQAELRTGSRPEIRILAYALRLPTALQRSDYLRSAFTKLEDLEEFLDFVTEGVGYF-ENGGIDVRSNMPQENLDKMKDIQREAERMREFYL 333
BLAST of mRNA_E-fasciculatus_F_contig1357.2655.1 vs. uniprot
Match: A0A7S0H6I8_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0H6I8_9CRYP) HSP 1 Score: 79.7 bits (195), Expect = 2.560e-12 Identity = 56/200 (28.00%), Postives = 101/200 (50.50%), Query Frame = 3
Query: 546 LAGTPMADWKPAVIDEYMESLLKRGIFRQTMDERLAKVRSGEEREALARVDSYMTGFLGHEWRKASRKKARGRGRRDVSVILSAAAEGPMELDDCVQTLGKADLLDSDLTEYVASLIT-AEERK----CVKSVLLKVLKTVRDRIQAELTTGARPEIRTLARALAIEDGAQRKEFLQHAFPKLEELDEFVKFVEEGIDFL 1130
+A P + P + + E+LL I++ M RL + S EE + L VD + F + ++ K + I+ AA EGP LD+ + + LD L +Y+ ++ A+E + +SVL+K+LK ++DR+ AE+ T +P ++ LA L +ED +R+ FL+ A ++ F F+ +G+ ++
Sbjct: 157 MAPAPFGELPPRLFLDNAEALLNEPIYKNVMYRRLEECSSEEELQLLEVVDEKLLEFKKEQRDLINKAK--------LEYIIGAALEGPEVLDEIMTDFCENRALDDGLVDYLDEIVAKAQEEENNSDSKESVLVKMLKVIKDRVVAEIRTRDKPYVKLLASLLRMEDHPEREAFLRGALLNPDDAIRFQGFIVDGVQYM 348
BLAST of mRNA_E-fasciculatus_F_contig1357.2655.1 vs. uniprot
Match: L1IL05_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IL05_GUITC) HSP 1 Score: 63.5 bits (153), Expect = 8.140e-8 Identity = 38/123 (30.89%), Postives = 70/123 (56.91%), Query Frame = 3
Query: 777 VSVILSAAAEGPMELDDCVQTLGKADLLDSDLTEYVASLIT-AEERK----CVKSVLLKVLKTVRDRIQAELTTGARPEIRTLARALAIEDGAQRKEFLQHAFPKLEELDEFVKFVEEGIDFL 1130
+ I+ AA EGP LD+ + + LD L +Y+ ++ A+E + +SVL+K+LK ++DR+ AE+ T +P ++ LA L +ED +R+ FL+ A ++ F F+ +G+ ++
Sbjct: 40 LEYIIGAALEGPEVLDEIMTEFCENRGLDDGLVDYLDEIVAKAQEDENNSDSKESVLVKMLKVIKDRVVAEIRTRDKPYVKLLASLLRMEDHPEREAFLRGALLNPDDATRFQGFIVDGVQYM 162 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1357.2655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1357.2655.1 >prot_E-fasciculatus_F_contig1357.2655.1 ID=prot_E-fasciculatus_F_contig1357.2655.1|Name=mRNA_E-fasciculatus_F_contig1357.2655.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=394bp MNMRYATRAAAAVGVFAASSGSIVREAFVAGPLFHPAAVRHRSSSSSSSSback to top mRNA from alignment at E-fasciculatus_F_contig1357:3376..7352+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1357.2655.1 ID=mRNA_E-fasciculatus_F_contig1357.2655.1|Name=mRNA_E-fasciculatus_F_contig1357.2655.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3977bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1357:3376..7352+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1357:3376..7352+ >mRNA_E-fasciculatus_F_contig1357.2655.1 ID=mRNA_E-fasciculatus_F_contig1357.2655.1|Name=mRNA_E-fasciculatus_F_contig1357.2655.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2364bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1357:3376..7352+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |