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Homology
BLAST of mRNA_E-fasciculatus_F_contig1356.2648.1 vs. uniprot
Match: A0A6H5JHQ3_9PHAE (DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ3_9PHAE) HSP 1 Score: 466 bits (1199), Expect = 5.380e-153 Identity = 269/376 (71.54%), Postives = 288/376 (76.60%), Query Frame = 1
Query: 250 MASSPSIYHQGKHSLFTQRFRKIDAIRNALRTAVTEELAQQTQEKRRETYRVNAENKRRSA-AAAAALDTKTDTSGSLPGSNSVGDGHGPEVSIAVPCRLGCDGAARKKTRSASSSSFGNSGGRAVSRPHDRQGEPLSTAACVKIASADPDKAFGLRVDSGDAPRGEEEGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFTESQSAFASAGAKGGGGAKAGVRFFEDILRLGPKGTRPNAVGGALPNSKRKPHPRVRGGCKGEASRTQANKKPRQGTGAVPGPFAGLSLCVVHLGSVTSNTVKAFKRGVCDGGGQVATRFMPADTTHIVADPSLAASWEKLDNYFSGRGGIDDLDGTVGGGGVGLKRG 1374
MASSPS+YHQGKH+ FTQRFRKIDAIR ALRTAV EELAQQT+E+RRET+RVNAENKRRSA AAAAALD KTD+SG PG +S DG+G EVSI+VPCRLGCDG A +TRSA G+SGGRAVSRP DR E LSTAACVK ASA PDKAFG RVDSGD P GE+EGAS V TESQS ASAGAKGGG AK GVRF EDILRLGPKG+R N GGALPN KRK HPR RGGCKGEASRTQ +KKPRQGTGAV GPF+GLSLCVVHLGSVT+NT+K FKRGVCDGGG V+ RF P DTTHIVAD SLAASWEKLDNYFSG GG+DDLD V GG VGLK G
Sbjct: 1 MASSPSVYHQGKHNPFTQRFRKIDAIRTALRTAVAEELAQQTEERRRETHRVNAENKRRSATAAAAALDGKTDSSGIFPGRDS--DGYGSEVSISVPCRLGCDGTA-SRTRSA-----GSSGGRAVSRPRDRLVELLSTAACVKQASASPDKAFGWRVDSGDGPEGEQEGASGVASTCGGRRDGHDRGPTPPPAAAS---------VSTESQSVLASAGAKGGG-AKTGVRFLEDILRLGPKGSRSNDAGGALPNPKRKSHPR-RGGCKGEASRTQTHKKPRQGTGAVSGPFSGLSLCVVHLGSVTNNTIKTFKRGVCDGGGHVSMRFTPGDTTHIVADASLAASWEKLDNYFSGWGGVDDLDDAVNGGRVGLKSG 357
BLAST of mRNA_E-fasciculatus_F_contig1356.2648.1 vs. uniprot
Match: D7G2F7_ECTSI (DNA polymerase lambda n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F7_ECTSI) HSP 1 Score: 142 bits (358), Expect = 8.260e-33 Identity = 75/133 (56.39%), Postives = 91/133 (68.42%), Query Frame = 1
Query: 934 VRFFEDILRLGPKGTRPNAVGGALPNSKRKPHPRVRGGCKGEASRTQANKKPRQGTGAVPGPFAGLSLCVVHLGSVTSNTVKAFKRGVCDGGGQVATRFMPADTTHIVADPSLAASWEKLDNYFSGRGGIDDL 1332
+R+ ED+L PKG+R NAV A P+ KRK PR GG G+ + NK+P + GA GPF+GLSLCVV GSVT+NTV R DGGGQV+T + P DTTHIVAD SLAASWEKLD+YFSG +D+
Sbjct: 3 IRYLEDLLCSAPKGSRSNAV--AAPSPKRKNRPR--GGASGDNGGIETNKRPWKRAGAASGPFSGLSLCVVSQGSVTNNTVGTLTREFRDGGGQVSTHYTPGDTTHIVADASLAASWEKLDDYFSGWDDFEDV 131
BLAST of mRNA_E-fasciculatus_F_contig1356.2648.1 vs. uniprot
Match: A0A6H5JQ91_9PHAE (DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ91_9PHAE) HSP 1 Score: 140 bits (354), Expect = 2.540e-32 Identity = 76/133 (57.14%), Postives = 89/133 (66.92%), Query Frame = 1
Query: 934 VRFFEDILRLGPKGTRPNAVGGALPNSKRKPHPRVRGGCKGEASRTQANKKPRQGTGAVPGPFAGLSLCVVHLGSVTSNTVKAFKRGVCDGGGQVATRFMPADTTHIVADPSLAASWEKLDNYFSGRGGIDDL 1332
+R ED+L GPKG+R NAV A PN KRK PR GG G+ + K+P + GA GPF+GLSLCVV LGSVT+NTV R DGGGQV+T + P DTTHIVAD SLAASWEK D YFSG +D+
Sbjct: 3 IRDLEDLLCSGPKGSRSNAV--AAPNPKRKTRPR--GGAGGDNGGIKTKKRPWKRAGAASGPFSGLSLCVVRLGSVTNNTVGTLPREFRDGGGQVSTHYTPGDTTHIVADASLAASWEKFDLYFSGWDDFEDV 131
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 141.7 |
| Seed ortholog evalue | 6.8e-31 |
| Seed eggNOG ortholog | 2880.D7G2F7 |
| Preferred name | POLB |
| KEGG rclass | RC00536 |
| KEGG ko | ko:K01834,ko:K02330,ko:K03512,ko:K10981 |
| KEGG Reaction | R01518 |
| KEGG Pathway | ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03410,ko03450,ko04922,ko05166,ko05203,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03410,map03450,map04922,map05166,map05203,map05230 |
| KEGG Module | M00001,M00002,M00003,M00296 |
| GOs | GO:0000228,GO:0000724,GO:0000725,GO:0000726,GO:0000793,GO:0000794,GO:0000795,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002562,GO:0002566,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0003887,GO:0003906,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005819,GO:0005856,GO:0005874,GO:0005876,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006281,GO:0006284,GO:0006285,GO:0006286,GO:0006287,GO:0006288,GO:0006289,GO:0006290,GO:0006302,GO:0006303,GO:0006310,GO:0006464,GO:0006508,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006952,GO:0006954,GO:0006974,GO:0007154,GO:0007165,GO:0007275,GO:0007431,GO:0007435,GO:0007568,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0008219,GO:0008630,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009636,GO:0009653,GO:0009887,GO:0009987,GO:0010033,GO:0010212,GO:0010224,GO:0010332,GO:0012501,GO:0015630,GO:0015631,GO:0016311,GO:0016444,GO:0016445,GO:0016446,GO:0016447,GO:0016579,GO:0016740,GO:0016772,GO:0016779,GO:0016829,GO:0016835,GO:0018130,GO:0019438,GO:0019538,GO:0019899,GO:0022612,GO:0023052,GO:0030145,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033151,GO:0033152,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0035272,GO:0035556,GO:0036211,GO:0036296,GO:0042221,GO:0042493,GO:0042592,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044454,GO:0044464,GO:0045471,GO:0046483,GO:0046677,GO:0046872,GO:0046914,GO:0048513,GO:0048534,GO:0048535,GO:0048536,GO:0048731,GO:0048732,GO:0048856,GO:0048872,GO:0050789,GO:0050794,GO:0050896,GO:0051103,GO:0051402,GO:0051575,GO:0051716,GO:0055093,GO:0065007,GO:0065008,GO:0070013,GO:0070482,GO:0070646,GO:0070647,GO:0070997,GO:0071704,GO:0071707,GO:0071897,GO:0090304,GO:0097159,GO:0097190,GO:0097193,GO:0097305,GO:0097510,GO:0098501,GO:0098502,GO:0099080,GO:0099081,GO:0099086,GO:0099512,GO:0099513,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901700 |
| EggNOG free text desc. | DNA-directed DNA polymerase activity |
| EggNOG OGs | COG1796@1,KOG2534@2759 |
| Ec32 ortholog description | DNA polymerase beta, thumb domain |
| Ec32 ortholog | Ec-27_001410.2 |
| EC | 2.7.7.7,5.4.2.11 |
| COG Functional cat. | L |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko03400,ko04131,ko04147 |
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 1374 |
| Cds size | 1125 |
| Stop | 0 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622927853.1431408-UTR-E-fasciculatus_F_contig1356:10977..11226 | 1622927853.1431408-UTR-E-fasciculatus_F_contig1356:10977..11226 | Ectocarpus fasciculatus Ec846f_Ec191_B4_f female | UTR | E-fasciculatus_F_contig1356 10978..11226 + |
| 1695995723.8535404-UTR-E-fasciculatus_F_contig1356:10977..11226 | 1695995723.8535404-UTR-E-fasciculatus_F_contig1356:10977..11226 | Ectocarpus fasciculatus Ec846f_Ec191_B4_f female | UTR | E-fasciculatus_F_contig1356 10978..11226 + |
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1356.2648.1 >prot_E-fasciculatus_F_contig1356.2648.1 ID=prot_E-fasciculatus_F_contig1356.2648.1|Name=mRNA_E-fasciculatus_F_contig1356.2648.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=375bp
MASSPSIYHQGKHSLFTQRFRKIDAIRNALRTAVTEELAQQTQEKRRETY RVNAENKRRSAAAAAALDTKTDTSGSLPGSNSVGDGHGPEVSIAVPCRLG CDGAARKKTRSASSSSFGNSGGRAVSRPHDRQGEPLSTAACVKIASADPD KAFGLRVDSGDAPRGEEEGASGAASTSGGRRDDDDDHGPTPPTAAAAAAA AAAASVFTESQSAFASAGAKGGGGAKAGVRFFEDILRLGPKGTRPNAVGG ALPNSKRKPHPRVRGGCKGEASRTQANKKPRQGTGAVPGPFAGLSLCVVH LGSVTSNTVKAFKRGVCDGGGQVATRFMPADTTHIVADPSLAASWEKLDN YFSGRGGIDDLDGTVGGGGVGLKRG back to topmRNA from alignment at E-fasciculatus_F_contig1356:10978..12351+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1356.2648.1 ID=mRNA_E-fasciculatus_F_contig1356.2648.1|Name=mRNA_E-fasciculatus_F_contig1356.2648.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1374bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1356:10978..12351+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) CTGGCCGCAGACACGACAGGTCGCAACGGCAGCCGTGGCGCGACAGCTGG
GAGGGAGCAAGATGAAAGGTTCAGTAACTGCACTGCCCACTGCAAATAAC
TGCTGATAGGTTCATCTAAATTTCCCCAGCAGCAGCATATTCGGCGGTCC
TACAACTCTAAAAGAGCGATCTTTGGACGTTGAGTTGCGAATTCGCTGCT
CCAATATTTGGAACGACCTTGGCGCGGTCGTGGAGCTGACAGCGTAGCAA
TGGCATCCTCTCCGAGCATCTATCATCAAGGCAAGCACAGCCTGTTCACT
CAGCGGTTTCGCAAGATCGACGCAATTCGCAATGCTCTCCGAACGGCAGT
CACCGAAGAGCTCGCTCAGCAGACCCAGGAGAAGCGACGCGAGACCTACC
GGGTCAACGCGGAGAACAAGAGGAGATCGGCGGCCGCAGCTGCAGCGTTG
GACACCAAAACGGACACCAGCGGCAGTCTTCCTGGTAGCAATAGCGTCGG
TGATGGCCACGGTCCTGAAGTCTCAATCGCCGTGCCGTGCAGGCTGGGGT
GCGACGGAGCAGCCCGCAAGAAGACCCGTTCCGCCTCGTCCTCCTCCTTT
GGCAACAGTGGCGGCCGGGCTGTCTCACGGCCCCACGACAGACAGGGAGA
GCCTCTTAGCACCGCCGCGTGTGTTAAAATAGCATCCGCCGACCCGGACA
AGGCTTTTGGTTTGAGAGTTGATAGCGGCGACGCTCCGAGGGGAGAGGAA
GAGGGTGCCTCGGGCGCTGCTAGCACTTCCGGGGGTCGTCGTGATGACGA
TGATGACCACGGACCGACGCCTCCCACAGCAGCAGCAGCAGCAGCAGCAG
CAGCGGCAGCATCAGTGTTTACGGAAAGCCAATCAGCCTTCGCTTCCGCG
GGTGCTAAAGGAGGAGGCGGTGCCAAAGCGGGCGTTCGGTTTTTCGAAGA
CATCTTGCGTTTGGGCCCGAAAGGAACGCGTCCCAACGCTGTCGGAGGGG
CGCTGCCGAACTCGAAACGAAAACCTCACCCGCGCGTGCGTGGGGGTTGC
AAGGGCGAGGCGAGCAGAACCCAGGCCAACAAGAAGCCGCGGCAAGGGAC
AGGCGCGGTACCCGGACCGTTCGCTGGGCTGTCCCTTTGCGTGGTGCACC
TGGGTTCGGTGACCAGCAACACGGTCAAGGCATTCAAGCGGGGTGTCTGC
GACGGCGGAGGGCAAGTGGCGACGCGCTTCATGCCGGCCGATACGACCCA
CATCGTGGCGGACCCCTCGCTAGCCGCCTCCTGGGAGAAGCTGGACAACT
ACTTCAGCGGGCGGGGTGGCATCGATGACCTTGACGGTACCGTAGGCGGC
GGGGGGGTGGGGTTAAAGAGGGGC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1356:10978..12351+ >mRNA_E-fasciculatus_F_contig1356.2648.1 ID=mRNA_E-fasciculatus_F_contig1356.2648.1|Name=mRNA_E-fasciculatus_F_contig1356.2648.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2250bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1356:10978..12351+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGGCATCCTCTCCGAGCATCTATCATCAAGGCAAGCACAGCCTGTTCAC TCAGCGGTTTCGCAAGATCGACGCAATTCGCAATGCTCTCCGAACGGCAG TCACCGAAGAGCTCGCTCAGCAGACCCAGGAGAAGCGACGCGAGACCTAC CGGGTCAACGCGGAGAACAAGAGGAGATCGGCGGCCGCAGCTGCAGCGTT GGACACCAAAACGGACACCAGCGGCAGTCTTCCTGGTAGCAATAGCGTCG GTGATGGCCACGGTCCTGAAGTCTCAATCGCCGTGCCGTGCAGGCTGGGG TGCGACGGAGCAGCCCGCAAGAAGACCCGTTCCGCCTCGTCCTCCTCCTT TGGCAACAGTGGCGGCCGGGCTGTCTCACGGCCCCACGACAGACAGGGAG AGCCTCTTAGCACCGCCGCGTGTGTTAAAATAGCATCCGCCGACCCGGAC AAGGCTTTTGGTTTGAGAGTTGATAGCGGCGACGCTCCGAGGGGAGAGGA AGAGGGTGCCTCGGGCGCTGCTAGCACTTCCGGGGGTCGTCGTGATGACG ATGATGACCACGGACCGACGCCTCCCACAGCAGCAGCAGCAGCAGCAGCA GCAGCGGCAGCATCAGTGTTTACGGAAAGCCAATCAGCCTTCGCTTCCGC GGGTGCTAAAGGAGGAGGCGGTGCCAAAGCGGGCGTTCGGTTTTTCGAAG ACATCTTGCGTTTGGGCCCGAAAGGAACGCGTCCCAACGCTGTCGGAGGG GCGCTGCCGAACTCGAAACGAAAACCTCACCCGCGCGTGCGTGGGGGTTG CAAGGGCGAGGCGAGCAGAACCCAGGCCAACAAGAAGCCGCGGCAAGGGA CAGGCGCGGTACCCGGACCGTTCGCTGGGCTGTCCCTTTGCGTGGTGCAC CTGGGTTCGGTGACCAGCAACACGGTCAAGGCATTCAAGCGGGGTGTCTG CGACGGCGGAGGGCAAGTGGCGACGCGCTTCATGCCGGCCGATACGACCC ACATCGTGGCGGACCCCTCGCTAGCCGCCTCCTGGGAGAAGCTGGACAAC TACTTCAGCGGGCGGGGTGGCATCGATGACCTTGACGGTACCGTAGGCGG CGGGGGGGTGGGGTTAAAGAGGGGCATGGCATCCTCTCCGAGCATCTATC ATCAAGGCAAGCACAGCCTGTTCACTCAGCGGTTTCGCAAGATCGACGCA ATTCGCAATGCTCTCCGAACGGCAGTCACCGAAGAGCTCGCTCAGCAGAC CCAGGAGAAGCGACGCGAGACCTACCGGGTCAACGCGGAGAACAAGAGGA GATCGGCGGCCGCAGCTGCAGCGTTGGACACCAAAACGGACACCAGCGGC AGTCTTCCTGGTAGCAATAGCGTCGGTGATGGCCACGGTCCTGAAGTCTC AATCGCCGTGCCGTGCAGGCTGGGGTGCGACGGAGCAGCCCGCAAGAAGA CCCGTTCCGCCTCGTCCTCCTCCTTTGGCAACAGTGGCGGCCGGGCTGTC TCACGGCCCCACGACAGACAGGGAGAGCCTCTTAGCACCGCCGCGTGTGT TAAAATAGCATCCGCCGACCCGGACAAGGCTTTTGGTTTGAGAGTTGATA GCGGCGACGCTCCGAGGGGAGAGGAAGAGGGTGCCTCGGGCGCTGCTAGC ACTTCCGGGGGTCGTCGTGATGACGATGATGACCACGGACCGACGCCTCC CACAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCATCAGTGTTTACGG AAAGCCAATCAGCCTTCGCTTCCGCGGGTGCTAAAGGAGGAGGCGGTGCC AAAGCGGGCGTTCGGTTTTTCGAAGACATCTTGCGTTTGGGCCCGAAAGG AACGCGTCCCAACGCTGTCGGAGGGGCGCTGCCGAACTCGAAACGAAAAC CTCACCCGCGCGTGCGTGGGGGTTGCAAGGGCGAGGCGAGCAGAACCCAG GCCAACAAGAAGCCGCGGCAAGGGACAGGCGCGGTACCCGGACCGTTCGC TGGGCTGTCCCTTTGCGTGGTGCACCTGGGTTCGGTGACCAGCAACACGG TCAAGGCATTCAAGCGGGGTGTCTGCGACGGCGGAGGGCAAGTGGCGACG CGCTTCATGCCGGCCGATACGACCCACATCGTGGCGGACCCCTCGCTAGC CGCCTCCTGGGAGAAGCTGGACAACTACTTCAGCGGGCGGGGTGGCATCG ATGACCTTGACGGTACCGTAGGCGGCGGGGGGGTGGGGTTAAAGAGGGGC back to top
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