mRNA_E-fasciculatus_F_contig1355.2640.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1355.2640.1 vs. uniprot
Match: D7FQI7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQI7_ECTSI) HSP 1 Score: 409 bits (1050), Expect = 1.990e-139 Identity = 256/286 (89.51%), Postives = 261/286 (91.26%), Query Frame = 1
Query: 139 MSAGGGSP-EDVRDIFRAIRRGNLAEVKRFLDEGGNVETVGGRFHSTLLTEACRFRATKVIDLLLERGAAANVSGGGFWTPLHYACNGPGRGGAXXXXXXXLVTTLVEHHGEVDATDFYGRTPLHLACSKGSAAVALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRERQSLAMSLLESAGAAPGAKNCWGELAGTLAPDYKMNPVVHDDEEHQDADAGPCMACSATKGRHYYFCRSEILRELPDSMILGPDGKPRVE 993
MSAGGG+P EDVRDIFRAIRRGNLAEVKRFLDEGGNVETVGGRFHSTLLTEACRFRATKVIDLLLERGAAANVSGGGFWTPLHYACNGP RG A LVTTLV +HGEVDATDFYGRTPLHLACSKGSAAVALA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RERQSLAMSLLESAGA PGAKNCWGELAGTLAPDYKMNPVVHD EEHQDAD GPC+ACSATKGRHYYFCRSEIL+ELPDSM+LGPDGKPRVE
Sbjct: 1 MSAGGGTPREDVRDIFRAIRRGNLAEVKRFLDEGGNVETVGGRFHSTLLTEACRFRATKVIDLLLERGAAANVSGGGFWTPLHYACNGPCRGTAAAAAAAKLVTTLVANHGEVDATDFYGRTPLHLACSKGSAAVALALLEAGAEPNVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRERQSLAMSLLESAGADPGAKNCWGELAGTLAPDYKMNPVVHD-EEHQDADTGPCIACSATKGRHYYFCRSEILQELPDSMVLGPDGKPRVE 285
BLAST of mRNA_E-fasciculatus_F_contig1355.2640.1 vs. uniprot
Match: A0A6H5JVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVF4_9PHAE) HSP 1 Score: 355 bits (912), Expect = 1.850e-118 Identity = 237/270 (87.78%), Postives = 244/270 (90.37%), Query Frame = 1
Query: 184 RAIRRGNLAEVKRFLDEGGNVETVGGRFHSTLLTEACRFRATKVIDLLLERGAAANVSGGGFWTPLHYACNGPGRGGAXXXXXXXLVTTLVEHHGEVDATDFYGRTPLHLACSKGSAAVALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRERQSLAMSLLESAGAAPGAKNCWGELAGTLAPDYKMNPVVHDDEEHQDADAGPCMACSATKGRHYYFCRSEILRELPDSMILGPDGKPRVE 993
RAIRRGNLAEVKRFLDEGGNVETVGGRFHSTLLTEACRFRATKVI+LLLERGAAANVSGGG WTPLHYACNGP RG A LVTTLVE+HG+VDATDFYGRTPLHLACSKGSAAVALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ESAGA P AKNCWGELAGTLAPDYKMNPVVHD EEHQDAD GPCMACSATKGRHYYFCRSE+L++LPDSM+LGPDGKPRVE
Sbjct: 20 RAIRRGNLAEVKRFLDEGGNVETVGGRFHSTLLTEACRFRATKVIELLLERGAAANVSGGGCWTPLHYACNGPCRGSAAATAAAELVTTLVENHGDVDATDFYGRTPLHLACSKGSAAVALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESAGADPAAKNCWGELAGTLAPDYKMNPVVHD-EEHQDADTGPCMACSATKGRHYYFCRSEVLQDLPDSMVLGPDGKPRVE 288
BLAST of mRNA_E-fasciculatus_F_contig1355.2640.1 vs. uniprot
Match: A0A7X3NPA2_9BACT (Uncharacterized protein n=2 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A7X3NPA2_9BACT) HSP 1 Score: 58.2 bits (139), Expect = 2.250e-5 Identity = 25/72 (34.72%), Postives = 43/72 (59.72%), Query Frame = 1
Query: 175 DIFRAIRRGNLAEVKRFLDEGGNVETVGGRFHSTLLTEACRFRATKVIDLLLERGAAANVSGGGFWTPLHYA 390
D++ A R G+L +KR+++EGGN+ + F + ++ + + T+V+ LL+E G N+ G TPLH A
Sbjct: 606 DLWTAARTGDLQAIKRYIEEGGNINALDKGFQVSAMSWSALYGQTEVVQLLIENGVDVNIKNGDGATPLHSA 677
BLAST of mRNA_E-fasciculatus_F_contig1355.2640.1 vs. uniprot
Match: A0A553P5T0_TIGCA (Protein kinase domain-containing protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553P5T0_TIGCA) HSP 1 Score: 57.0 bits (136), Expect = 3.650e-5 Identity = 36/126 (28.57%), Postives = 61/126 (48.41%), Query Frame = 1
Query: 169 VRDIFRAIRRGNLAEVKRFLDEGGNVETVGGRFHSTLLTEACRFRATKVIDLLLERGAAANVSGGGFWTPLHYACNGPGRGGAXXXXXXXLVTTLVEHHGEVDATDFYGRTPLHLACSKGSAAVAL 546
+ DIF IR+G+ +V+ +LD+ + G + L A + +K++D+L++RGA + + G TPLH A L+ H +++ + +G TPLH AC +VAL
Sbjct: 1 MEDIFHWIRKGDAIQVRLWLDDTEHDMNQGDDHQFSPLHWAAKGGHSKIVDMLIQRGARVHTTNMGDDTPLHLAA------------AHGHQDILLNHKADLNFINEHGNTPLHYACFWNYESVAL 114 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1355.2640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1355.2640.1 >prot_E-fasciculatus_F_contig1355.2640.1 ID=prot_E-fasciculatus_F_contig1355.2640.1|Name=mRNA_E-fasciculatus_F_contig1355.2640.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=288bp MSAGGGSPEDVRDIFRAIRRGNLAEVKRFLDEGGNVETVGGRFHSTLLTEback to top mRNA from alignment at E-fasciculatus_F_contig1355:10434..12628+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1355.2640.1 ID=mRNA_E-fasciculatus_F_contig1355.2640.1|Name=mRNA_E-fasciculatus_F_contig1355.2640.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2195bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1355:10434..12628+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1355:10434..12628+ >mRNA_E-fasciculatus_F_contig1355.2640.1 ID=mRNA_E-fasciculatus_F_contig1355.2640.1|Name=mRNA_E-fasciculatus_F_contig1355.2640.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1728bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1355:10434..12628+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |