mRNA_E-fasciculatus_F_contig1348.2601.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1348.2601.1
Unique NamemRNA_E-fasciculatus_F_contig1348.2601.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1348.2601.1 vs. uniprot
Match: D7FLW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLW7_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 2.470e-14
Identity = 45/69 (65.22%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:  154 MPSCGKSGSEAQGAASSGGSQVGHREFHVKIKAGESVMPADEEEYNTLPTVEAPSEAGATHQEGREGSE 360
            M S GKSGSEAQGA SS GSQV   E +V IKAGES    DEEE+NT P +E   EAG THQE RE SE
Sbjct:    1 MLSGGKSGSEAQGAMSSSGSQVEQCEVNVAIKAGESESSEDEEEHNTSPVMEPTQEAGNTHQERREVSE 69
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1348.2601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLW7_ECTSI2.470e-1465.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1348contigE-fasciculatus_F_contig1348:3946..4998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-26_001110.3
Exons4
Model size381
Cds size381
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1348.2601.1prot_E-fasciculatus_F_contig1348.2601.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1348 3946..4998 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927847.2978873-CDS-E-fasciculatus_F_contig1348:3945..40941622927847.2978873-CDS-E-fasciculatus_F_contig1348:3945..4094Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1348 3946..4094 +
1695995720.9665582-CDS-E-fasciculatus_F_contig1348:3945..40941695995720.9665582-CDS-E-fasciculatus_F_contig1348:3945..4094Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1348 3946..4094 +
1622927847.3159335-CDS-E-fasciculatus_F_contig1348:4376..44171622927847.3159335-CDS-E-fasciculatus_F_contig1348:4376..4417Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1348 4377..4417 +
1695995720.9747415-CDS-E-fasciculatus_F_contig1348:4376..44171695995720.9747415-CDS-E-fasciculatus_F_contig1348:4376..4417Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1348 4377..4417 +
1622927847.329685-CDS-E-fasciculatus_F_contig1348:4615..46741622927847.329685-CDS-E-fasciculatus_F_contig1348:4615..4674Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1348 4616..4674 +
1695995720.9844704-CDS-E-fasciculatus_F_contig1348:4615..46741695995720.9844704-CDS-E-fasciculatus_F_contig1348:4615..4674Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1348 4616..4674 +
1622927847.339374-CDS-E-fasciculatus_F_contig1348:4866..49981622927847.339374-CDS-E-fasciculatus_F_contig1348:4866..4998Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1348 4867..4998 +
1695995720.9944158-CDS-E-fasciculatus_F_contig1348:4866..49981695995720.9944158-CDS-E-fasciculatus_F_contig1348:4866..4998Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1348 4867..4998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1348.2601.1

>prot_E-fasciculatus_F_contig1348.2601.1 ID=prot_E-fasciculatus_F_contig1348.2601.1|Name=mRNA_E-fasciculatus_F_contig1348.2601.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=127bp
AVEVVSVAQAARAAAAAKSAAAKAAVEAAEAAQAAAAALEADIEPPAGMA
RMPSCGKSGSEAQGAASSGGSQVGHREFHVKIKAGESVMPADEEEYNTLP
TVEAPSEAGATHQEGREGSEVRSLGV*
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mRNA from alignment at E-fasciculatus_F_contig1348:3946..4998+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1348.2601.1 ID=mRNA_E-fasciculatus_F_contig1348.2601.1|Name=mRNA_E-fasciculatus_F_contig1348.2601.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1053bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1348:3946..4998+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGGTTGAGGTGGTATCCGTGGCTCAAGCAGCAAGGGCGGCGGCTGCGGC
CAAATCAGCAGCGGCGAAGGCGGCAGTCGAAGCAGCAGAGGCTGCACAAG
CTGCTGCGGCAGCCTTGGAAGCGGATATTGAGCCACCGGCGGGCATGGCG
TACGTGCATGAGCTTGTTCGTTGGATAGCTGTGACTTGGCGTTTTTGTTT
GGGCGGTGCTGCGTTTTGTTTTGGCAAATGCACGTCTTCCGGTATCGTCT
ATTCAGAGTTCGAGCTCGTGTCCTCACGTTGATATTTTGCACCGGCGGCC
TTGTCGAAGTGCCCCACACTCTGATGTGGTGGTGTAGGGTCGACCACGCA
CCGCTGTGGATATTATGCGTACAACTTACTTTGGCTCTTGCCCCACCACG
TTGTTCCCGTTGGTCTGATGACCTCGTTCAGGAGAATGCCGAGTTGCGGC
AAGAGCGGCAGTGAAGCGCAAGGTGGGTCAAGGGCTTGGAAGACAGCCAA
GGTGGTGTGGCAGGGTGTCAACCACTCGATGCTTGATAATGACGAACCTG
AACCTGAATTGCGTGCGTCTAGCGTGTTCTGCCTTGCCACCTGCACGTCC
CCTTCCAAATATCGTTGCAATACTCGAAACGACGTCGTACCAATGTTCGT
ACAAATGCTTTTCCACGCAGGCGCGGCGTCATCTGGTGGTTCTCAAGTAG
GGCATCGCGAATTTCATGTGAAGATCAAGGTAAGTCGTTCTAGACATTGG
CCGCATGATACTGATCGGCCGCATGAGGCGCCAAAAACATGACACTGCAC
CTCTCCCCGCATCTGTACTGATCTGATGGATGCAGGACATTCCACATGAA
ATCTCCCCCGGTGTTCTACACTGATGATTGTGCGACTGCCCGTTCACGAC
CGCTATGCCTCCGTACCGCAGGCCGGCGAGTCAGTAATGCCTGCAGACGA
AGAGGAATACAACACATTACCCACCGTGGAAGCACCATCAGAGGCTGGAG
CCACTCACCAGGAAGGGCGAGAGGGGTCCGAGGTACGTTCGCTGGGCGTC
TAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1348:3946..4998+

>mRNA_E-fasciculatus_F_contig1348.2601.1 ID=mRNA_E-fasciculatus_F_contig1348.2601.1|Name=mRNA_E-fasciculatus_F_contig1348.2601.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=762bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1348:3946..4998+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGGTTGAGGTGGTATCCGTGGCTCAAGCAGCAAGGGCGGCGGCTGCGGC
CAAATCAGCAGCGGCGAAGGCGGCAGTCGAAGCAGCAGAGGCTGCACAAG
CTGCTGCGGCAGCCTTGGAAGCGGATATTGAGCCACCGGCGGGCATGGCG
CGGTTGAGGTGGTATCCGTGGCTCAAGCAGCAAGGGCGGCGGCTGCGGCC
AAATCAGCAGCGGCGAAGGCGGCAGTCGAAGCAGCAGAGGCTGCACAAGC
TGCTGCGGCAGCCTTGGAAGCGGATATTGAGCCACCGGCGGGCATGGCGA
GAATGCCGAGTTGCGGCAAGAGCGGCAGTGAAGCGCAAGGAGAATGCCGA
GTTGCGGCAAGAGCGGCAGTGAAGCGCAAGGCGCGGCGTCATCTGGTGGT
TCTCAAGTAGGGCATCGCGAATTTCATGTGAAGATCAAGGCGCGGCGTCA
TCTGGTGGTTCTCAAGTAGGGCATCGCGAATTTCATGTGAAGATCAAGGC
CGGCGAGTCAGTAATGCCTGCAGACGAAGAGGAATACAACACATTACCCA
CCGTGGAAGCACCATCAGAGGCTGGAGCCACTCACCAGGAAGGGCGAGAG
GGGTCCGAGGTACGTTCGCTGGGCGTCTAGGCCGGCGAGTCAGTAATGCC
TGCAGACGAAGAGGAATACAACACATTACCCACCGTGGAAGCACCATCAG
AGGCTGGAGCCACTCACCAGGAAGGGCGAGAGGGGTCCGAGGTACGTTCG
CTGGGCGTCTAG
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