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Homology
BLAST of mRNA_E-fasciculatus_F_contig1348.2602.1 vs. uniprot
Match: D7FLV4_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV4_ECTSI) HSP 1 Score: 77.0 bits (188), Expect = 3.030e-11 Identity = 39/67 (58.21%), Postives = 47/67 (70.15%), Query Frame = 3
Query: 3 GGGAAAQHLRRHHGCSSETTHRHNGGVARGTTAQPGLCTATRPDFSSKRAKQGMVRLRNKTCSHPGC 203
GGG AAQ+ RR SS+ RHN GVARGTTA+ G CTA +PDF S RAKQG+ + ++TC HP C
Sbjct: 83 GGGGAAQYHRRQRDYSSDKVDRHNAGVARGTTARHGHCTAMKPDFRSNRAKQGVAHI-SQTCGHPAC 148
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 1492 |
| Cds size | 1026 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1348.2602.1 >prot_E-fasciculatus_F_contig1348.2602.1 ID=prot_E-fasciculatus_F_contig1348.2602.1|Name=mRNA_E-fasciculatus_F_contig1348.2602.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=342bp
MVRLRNKTCSHPGCAVLHQAAVPLPHARAEDVIRERLEGSDGSAALSFFP ATKIPTAPLTRAVYPLTKDKHTPDGVLDEWQALGGGDVVRHEGETVEPDL ERRARPSRIAETRERRDSPDIGGAAEPTPGGRLGAQGSGKSAGKRADSGS ERGRDSGQEPSTDADMDQGAYEQFGRVGEVTPSTSGAGNDGGLLGVSTPD ACDAKDKMLRDFEEVPHGQSGILRDGVRVSDVVRSFRAKGREWLTDVASK EFSGSEFSKLAPSVRCTLCRPHSVVENVQALEARFQEDGVTGCGLTGKDI IQRLVPILMNAGILVSSGTRGKYRVGSALTGADHEMRIESD* back to topmRNA from alignment at E-fasciculatus_F_contig1348:6880..12276+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1348.2602.1 ID=mRNA_E-fasciculatus_F_contig1348.2602.1|Name=mRNA_E-fasciculatus_F_contig1348.2602.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5397bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1348:6880..12276+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) GCGGGGGTGGTGCAGCGGCGCAGCACCTAAGACGGTGAGCTTGATTGGAA
CTATAGTTCTCAGAGTTTCAATTTGAAAATGTCGGGTACCGGGTTGTCTG
TACATGCTGTCCCAGGCTTTGTGAAGCGCGTCACTCCTACTTCGCCTTCT
CAGGGCGCTGGTGGGTGAGACCGTTTGAGTAGCCGAAGGTTCTTCTAGAC
GGGGTTGCTGCCATGCAACAGGCTAGCTGTATCGACACAACAGCAGTGCT
TGCAGCTCCCTCGAGTGTACACCATGTTTCGTTGGCGGTGGTTGGGTCGG
CCCACACATCTAGGTTTGAGTATCTGGGGTTTGAGGGTGGGGGAAGCGGC
GAGGGGATACGCGCAGACACGAGAAAGCTTTCATTCGACTTATCACAGCC
AAGAAGAAGCCGCTCAAAAACGCATTGCCTCGCGACTACAGAATGCTGAA
TGCTAGCAGAGCATAAAGTTGCAGGATCCCAATTTCATTCTTCAAGAAGC
TCACTCCTACAATATAGTGAACCTGCCCCATCGATTCACACGAAGACGTG
CGGGAACATACAAAATTGCCCCGTCTGAGGTTGACGATGATCGCTCGCTT
CAGCTGACAGGCGACTGATGTGCACAACGACGTTCAACTCGCGGCTCGAC
GCGCACACTTACGCCGCCTCCATTGCGATGGTGTATTGGTGCACACGCGA
ACAATGTTCATGCATCGAGTGGGATTGGAGAAGGGAGGAAAGGTTGCCCA
TAACTCGATGGAGCCCACGTTCCCCGTGGTTTGAATAACGCATGACGTGC
GGCGGATAGGTTTGATCAGAAAGTAGATTTCTGTAGCTTTTGGCCAAAGG
CGTCCATGAAGAACCAACTTTGTTAAAGACCCCACGCGTCTGAAGACGAC
GGCAGTCAGTCAGCTTTCGTCAATGTCGTTGAAACAACGTCGAGCGGACC
CCCGGCGAGCGTGGCAGATGGAATCATAGACTTGACGAAGAATGCGGCAG
GTATATACGGTATACGGTAAGAGGCGGAGAGATGGCACCCCCTCTTAGAT
CTACTTCAAAGCTCGATTGCTCCATAACCGATGGGACACAGAAAAAGGCC
GGTACTGCTACAGAACGCCCTCCAGGAGATATTTCCGAAACCACCCTTTT
TGGCGTTGGCACAAAGCTTGGTTGTGGAGCTATCGACTTTTGAGTGTTGT
GCTTTATCTCTCCGCCCCTTACGGTACGTGACAGTTGTGGTGGAACAGCG
AGGGTTGGTTTAATGCCGAGGACAAGTGGAGAGTTTAAGGACAAGTCTGA
ACAACGTAGCCCGGAGGCAGGGAAACGTGTAGCGTTGTCCCATAATAGAG
ATTCTCTTGTTGCTGTTTGTGATCTCGCTCGCATACTTGCTGAGAACACC
CTGTGAGTCTTCAACGACCTATGAAGGGTCGTTGACTGGTCATATCGCAT
GAAATGGTGGTAACAAGCCGAGTTGTTGCCACCAGTGTAGCCCGCATTGT
CTGGTGTAGGCAAATCCATGGCGTTGTGCCTTCGTGCTAATTGGAAACGC
GTGAGCGTGAGCCGGCAGGACTCGCATTGACAAGGAGCAGAAATAACACA
AGTGCAGTTTCTAGGTCTGGATCTTCGCTCTCACTAATGATGTCAAACCC
AGTTCAAGCGGGTTAAAGAGGTGGCTGTTCAATGTCTGCAAGCCAAACCC
GCTCTACATGCCGCACCACGAGCCCCCGTCAGTCATACGTTTGCAACCAA
CCCCCTGGCTACCATAACGTCCTTTGGATCTACGATGGCCGTTGCGTGTA
CGTGTCTCATCTTCTGCGCACCGCTCGTTCTCTAGTTCTGTCTCTCATCC
TTTTGTTGTTCGTGGAGAATATATCATATGAAAACTAAAATAACCGAGAG
CCCGGGACTGAAGCCTTCTCGGCGGTGATGAGTCTAGACGTCTACCAAAG
AAGTTTTAGTACCACGGAGGGTTTAAATTCTGGAACGTGGGTGCTGCTCG
CTTTTTGTTTTTGCATCATCTTTTTCTGCAGTCACCACGGCTGTTCGTCA
GAAACAACGCACAGACACAACGGCGGTGTTGCCAGGGGTACGACTGCACA
ACCCGGCCTTTGCACGGCCACGAGGCCAGATTTCTCCTCGAAGCGCGCCA
AGCAGGGTATGGTCCGCCTTCGCAACAAGACGTGCAGCCACCCAGGGTGT
GCTGTCCTGCATCAGGCCGCCGTGCCTTTACCTCATGCCAGGGCAGAGGA
CGTCATCCGCGAGCGCTTGGAGGGTAGTGATGGGTCGGCTGCCTTGTCGT
TCTTTCCCGCAACCAAGATTCCCACGGCCCCCCTCACTCGGGCCGTTTAT
CCTCTAACAAAGGACAAACATACTCCCGACGGAGTACTGGACGAGTGGCA
GGCTCTCGGAGGCGGGGACGTTGTACGACATGAGGGAGGTGAGGCAGTAA
GGGTTACATGTTAAGAGGAGAATCGCGAGTTTAGCCTTTCGGCAGTTCTC
CACAGCCATTTAAATGGTCGCTGGCGCTCATGGCTAGTTCTGGGCTCGCT
TGGACGTTTGTGACATATTCGGGAACAAGGGGTAAAGCGACTCGTCATAC
AATTGAAAAAATTCAGGATTATGCGAGCGGTTAGCAGAGAACCCGGAGAA
AAGGACTTTGGGCTTTGCCAAACTTTGCTGGAAATATTGACCACATATCA
TACTCGCAGAACGTCTGGTGTCGATGTGGCCCTTGCTTTCAAACTTTGCA
GAGACCGTCGAGCCTGATTTAGAGAGGCGAGCGAGACCATCTCGGATTGC
AGAGACAAGGGAACGGAGGGATAGTCCTGACATTGGTGGCGCAGCAGAGC
CTACACCAGGCGGAAGACTTGGGGCGCAAGGATCAGGTGAGTTCACCGTG
CTGGGGGGTTCCAGCGGTATGTCGCTAGGGCTATCCCGAATCTGGGGCTA
GGTGTAGTTTTCAATATGTTCACCCTGCCGCATCCAGTCCGGGGAGTTGC
GTGTGAAGTCTTACGTTTCTTTTTCTAAGGCAGCACGAAAAAGGAGTTCA
GTAGGACAATAGCATTAGGGATGTTTGAGTTGTTCGATACACTTCAGAAC
ATTTTTACTTACAACGGTCCAGAACAACTGGGGCCCTTTGATATGCAACC
TCTCTAACAGGAAAATCCGCTGGCAAGAGGGCTGACTCGGGGTCGGAGCG
TGGACGGGACTCGGGCCAGGAACCGAGCACTGACGCTGACATGGACCAGG
GTGCCTACGAGCAATTTGGTCGTGAGTTGGTTAATAGACACATATGTTGG
TGAACCAACGCAGGTAGTCGGTTATCGGTGGCTTCTAGCTCCGGCTTCAC
GCCGCTCGCATACCATAGATAGTTCTTAGTTTCTTAAATGGGAAATATGT
ATAGGCGAGGGTTAGTAAGATGTGGAGATACGGCGCCGGATTCGATTACC
GTTATGGTTAGGCTTAGTGCTTCCCAAACCGTTGTTGTTTGCTTGCTTGG
CTGTTTACAACTTCAATGCAGTTACAATGCGTAGGCTAGGGTTGGGATGC
GAGATACGGTTAGGCGACGGGAGCTGCGGTCATAGCGCACGACGAGTTGG
CGGTCCAACGAGGGCTACTCGACGAAGTGGCCCTCCTGAACTTATGCACG
TTTCCCGTAGGTCAGCCGTTAACTTTCGCTCACCGCTTTAATTAACCAGA
AATAGCAGTTCGGGGGAACAGAGAGTGAGAATTGGATCTTACCATAGGTT
TCGTATTTTCGTGTCTGGGTGTTCCCGTCTGGTCCGCGTCTGGAGTGTCG
TCTAACGATCACCTCGCAGGTAAAGACTCAGATCCTATGTCAAATGACGA
AGGATTGGCCGAGGGGGAACCACGACGTGATGCCGAGTTCCAACGAGGCA
CTGATGATGTGTTACTGTATGCATGTCGTAGGGTCATTGGTTAACCAAGC
CCAGGCCTTTGGGAGTAGTCAGGAGGGTTAGCGATAGGTGTCGTGTCTTC
GGGGTGTAACGAACAGCCTGATTACTTGCGGTTAGTAGAATCCCATGAAG
TTGAAAAGACGAAGAGGCACTCCGAGATGTGTTTTCGTACGGCGGAGGAG
GAAAAGTATGGTAACACGATTAGGGTACAACCTTATGTACACATCTTGAG
GCCAAATGTTTCTGCCCCTAGCCTGGGCACCGTCGTCTCTATAGCATCGG
TTGTAACGTTGTTCGGCCCTCCGCAAGCTGTGATGCTATGATTCGTACTA
TGGGACTTTCCACTTTCAGGCGTTGGCGAGGTCACTCCGTCCACTTCCGG
GGCTGGAAACGACGGCGGGTTGCTTGGCGTGAGTACGCCGGATGCGTGTG
ATGCGAAGGATAAGGTGAGGGGGTAGTAGTTACAGTATAGCCTAGGCCCT
GGACGCAGGGTTAGGTACCTTTGAAACGGTCAAGCTTGGTGACGTTTGCT
TCAAACAATTGTCGTTAGTGGCAGCTTCGGGCTACGCCAGGTTGTAAGTG
CGGCGTTAAAACTATATAGCCCTGTGTCGTGTTGTTTGCCTAGCGAATTG
TTGGGCTATATAGCCCTGTGAGGTAAACACCGTAGACTCATGCATACATT
TTGGGTTTAGGACGAGAGAAGTTGGGCTAGCCATTAACACAAGCTTGTGC
CGTCGTCTGCTCATGATTGATACATCTGCTTCTGCAGATGCTCCGAGACT
TCGAAGAGGTGCCGCATGGGCAAAGCGGAATCCTCCGGGACGGCGTCAGG
GTTTCAGATGTTGTTCGGTCGTTCAGAGCGAAGGGGCGTGAGTGGTTGAC
CGACGTGGCCAGCAAAGAATTTTCCGGGTCGGAATTTTCGAAGCTGGCCC
CTTCAGTGAGGTGCACGTTGTGTCGTCCACACAGCGTGGTGGAAAATGTT
CAAGCGCTTGAGGCTAGGTTCCAGGAAGATGGAGTCACCGGTTGCGGTCT
AACCGGTAAGGACATTATTCAGCGCTTGGTGCCAATCCTGATGAACGCCG
GGATTCTGGTATCGTCTGGCACACGTGGCAAGTACCGCGTTGGGTCCGCG
TTGACCGGCGCCGACCACGAGATGAGGATCGAAAGTGATTAGACTGCGCC
GGATAGCCTTGGAACACCTTAGGCCAATCACTTCTCACGTTCGTATCAGG
GGTAGGAGTTAACGATGCAGGTGTTTGGGCAGGTACGACTGACCGTTGGC
GTTGAACGCCCTTGCTTAGGGGATTGGCTTTTCTAGATGTTTTACCTTTG
AGGCCACCGTTAGGCATCCACGGAAAAATTTGACACCGTGGTAGATGGAA
AATTTTGACACCGCTCGCTTGAGCAAGAAGACTACTGCTTTTGCGCGAGA
TTTGGGCCTTCGTTCGTTACGGTTAGCGTCTCGCAATGCGACTGGGC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1348:6880..12276+ >mRNA_E-fasciculatus_F_contig1348.2602.1 ID=mRNA_E-fasciculatus_F_contig1348.2602.1|Name=mRNA_E-fasciculatus_F_contig1348.2602.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2052bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1348:6880..12276+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGGTCCGCCTTCGCAACAAGACGTGCAGCCACCCAGGGTGTGCTGTCCT GCATCAGGCCGCCGTGCCTTTACCTCATGCCAGGGCAGAGGACGTCATCC GCGAGCGCTTGGAGGGTAGTGATGGGTCGGCTGCCTTGTCGTTCTTTCCC GCAACCAAGATTCCCACGGCCCCCCTCACTCGGGCCGTTTATCCTCTAAC AAAGGACAAACATACTCCCGACGGAGTACTGGACGAGTGGCAGGCTCTCG GAGGCGGGGACGTTGTACGACATGAGGGAGATGGTCCGCCTTCGCAACAA GACGTGCAGCCACCCAGGGTGTGCTGTCCTGCATCAGGCCGCCGTGCCTT TACCTCATGCCAGGGCAGAGGACGTCATCCGCGAGCGCTTGGAGGGTAGT GATGGGTCGGCTGCCTTGTCGTTCTTTCCCGCAACCAAGATTCCCACGGC CCCCCTCACTCGGGCCGTTTATCCTCTAACAAAGGACAAACATACTCCCG ACGGAGTACTGGACGAGTGGCAGGCTCTCGGAGGCGGGGACGTTGTACGA CATGAGGGAGAGACCGTCGAGCCTGATTTAGAGAGGCGAGCGAGACCATC TCGGATTGCAGAGACAAGGGAACGGAGGGATAGTCCTGACATTGGTGGCG CAGCAGAGCCTACACCAGGCGGAAGACTTGGGGCGCAAGGATCAGAGACC GTCGAGCCTGATTTAGAGAGGCGAGCGAGACCATCTCGGATTGCAGAGAC AAGGGAACGGAGGGATAGTCCTGACATTGGTGGCGCAGCAGAGCCTACAC CAGGCGGAAGACTTGGGGCGCAAGGATCAGGAAAATCCGCTGGCAAGAGG GCTGACTCGGGGTCGGAGCGTGGACGGGACTCGGGCCAGGAACCGAGCAC TGACGCTGACATGGACCAGGGTGCCTACGAGCAATTTGGTCGAAAATCCG CTGGCAAGAGGGCTGACTCGGGGTCGGAGCGTGGACGGGACTCGGGCCAG GAACCGAGCACTGACGCTGACATGGACCAGGGTGCCTACGAGCAATTTGG TCGCGTTGGCGAGGTCACTCCGTCCACTTCCGGGGCTGGAAACGACGGCG GGTTGCTTGGCGTGAGTACGCCGGATGCGTGTGATGCGAAGGATAAGGCG TTGGCGAGGTCACTCCGTCCACTTCCGGGGCTGGAAACGACGGCGGGTTG CTTGGCGTGAGTACGCCGGATGCGTGTGATGCGAAGGATAAGATGCTCCG AGACTTCGAAGAGGTGCCGCATGGGCAAAGCGGAATCCTCCGGGACGGCG TCAGGGTTTCAGATGTTGTTCGGTCGTTCAGAGCGAAGGGGCGTGAGTGG TTGACCGACGTGGCCAGCAAAGAATTTTCCGGGTCGGAATTTTCGAAGCT GGCCCCTTCAGTGAGGTGCACGTTGTGTCGTCCACACAGCGTGGTGGAAA ATGTTCAAGCGCTTGAGGCTAGGTTCCAGGAAGATGGAGTCACCGGTTGC GGTCTAACCGGTAAGGACATTATTCAGCGCTTGGTGCCAATCCTGATGAA CGCCGGGATTCTGGTATCGTCTGGCACACGTGGCAAGTACCGCGTTGGGT CCGCGTTGACCGGCGCCGACCACGAGATGAGGATCGAAAGTGATTAGATG CTCCGAGACTTCGAAGAGGTGCCGCATGGGCAAAGCGGAATCCTCCGGGA CGGCGTCAGGGTTTCAGATGTTGTTCGGTCGTTCAGAGCGAAGGGGCGTG AGTGGTTGACCGACGTGGCCAGCAAAGAATTTTCCGGGTCGGAATTTTCG AAGCTGGCCCCTTCAGTGAGGTGCACGTTGTGTCGTCCACACAGCGTGGT GGAAAATGTTCAAGCGCTTGAGGCTAGGTTCCAGGAAGATGGAGTCACCG GTTGCGGTCTAACCGGTAAGGACATTATTCAGCGCTTGGTGCCAATCCTG ATGAACGCCGGGATTCTGGTATCGTCTGGCACACGTGGCAAGTACCGCGT TGGGTCCGCGTTGACCGGCGCCGACCACGAGATGAGGATCGAAAGTGATT AG back to top
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