mRNA_E-fasciculatus_F_contig13478.2600.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13478.2600.1
Unique NamemRNA_E-fasciculatus_F_contig13478.2600.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13478.2600.1 vs. uniprot
Match: A0A6H5KSK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSK5_9PHAE)

HSP 1 Score: 242 bits (618), Expect = 2.410e-70
Identity = 196/219 (89.50%), Postives = 197/219 (89.95%), Query Frame = 1 
Query:    1 QDMENYVHYFVRCNAPEDTREKFKLAVHMSVYDGVKETAPSVKEIPPLLSGFFEREISARYNIEEDVVSVKPTRPPPSRPGWAAAXXXXXXXXXXXXXXXXXX-SSNGGYXXXXXXSAPPAANXXXXXXXXXXXXXXAAAAAPXXXXX----GYGXXXXGQQAAATNGGGADPAMXXXXXXXXXXXXXXXXPSEPQARVLYDYDPAGQEGMVAVSAGQV 642
            +DMENYVHYFVRCNAPEDTREKFKLAVHMSVYDGVKETAPSVKEIPPLLSGFFEREISARYNIEEDVVSVKPTRPPPSRPGWAAAXXXXXXXXXXXXXXXXXX SSNGG XXXXXXSAPPAAN    XXXXXXXXXX      XXXXX    GYG     QQAA TNGGGADPAMXXXXXXXXXXXXXXXXPSEPQARVLYDYDPAGQEGMVAVSAGQV
Sbjct: 1140 KDMENYVHYFVRCNAPEDTREKFKLAVHMSVYDGVKETAPSVKEIPPLLSGFFEREISARYNIEEDVVSVKPTRPPPSRPGWAAAXXXXXXXXXXXXXXXXXXGSSNGGXXXXXXXSAPPAANSTAAXXXXXXXXXXXXXXXXXXXXXXXXGGYG-----QQAAITNGGGADPAMXXXXXXXXXXXXXXXXPSEPQARVLYDYDPAGQEGMVAVSAGQV 1353
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BLAST of mRNA_E-fasciculatus_F_contig13478.2600.1 vs. uniprot
Match: D7G521_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G521_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 2.680e-68
Identity = 186/214 (86.92%), Postives = 188/214 (87.85%), Query Frame = 1 
Query:    1 QDMENYVHYFVRCNAPEDTREKFKLAVHMSVYDGVKETAPSVKEIPPLLSGFFEREISARYNIEEDVVSVKPTRPPPSRPGWAAAXXXXXXXXXXXXXXXXXXSSNGGYXXXXXXSAPPAANXXXXXXXXXXXXXXAAAAAPXXXXXGYGXXXXGQQAAATNGGGADPAMXXXXXXXXXXXXXXXXPSEPQARVLYDYDPAGQEGMVAVSAGQV 642
            +DMENYVHYFVRCNAPEDTREKFKLAVHMSVYDGVKETAPSVKEIPPLLSGFFEREISARYNIEEDVVSVKPTRPPPSRPGWAAAXXXXXXXXXXXXXXXXXX      XXXXXX   P A XXXXXXXXXXXXXX      XXXXX       GQ AA TNGGGADPAMXXXXXXXXXXXXXXXXPSEPQARVLYDYDPAGQEGMVAVSAGQ+
Sbjct:  147 KDMENYVHYFVRCNAPEDTREKFKLAVHMSVYDGVKETAPSVKEIPPLLSGFFEREISARYNIEEDVVSVKPTRPPPSRPGWAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGYGQPAAGTNGGGADPAMXXXXXXXXXXXXXXXXPSEPQARVLYDYDPAGQEGMVAVSAGQM 360
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BLAST of mRNA_E-fasciculatus_F_contig13478.2600.1 vs. uniprot
Match: A0A836C908_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C908_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.610e-20
Identity = 108/213 (50.70%), Postives = 118/213 (55.40%), Query Frame = 1 
Query:    1 QDMENYVHYFVRCNAPEDTREKFKLAVHMSVYDGVKETAPSVKEIPPLLSGFFEREISARYNIEEDVVSVKPTRPPPSRPGWAAAXXXXXXXXXXXXXXXXXXSSNGGYXXXXXXSAPPAANXXXXXXXXXXXXXXAAAAAPXXXXXGYGXXXXGQQAAATNGGGADPAMXXXXXXXXXXXXXXXXPSEPQARVLYDYDPAGQEGMVAVSAGQ 639
            +D+ENYVH FVR  AP   R+K KLAVHMSV +G K  AP  +EIP +L  FF+R I  RYNIE+DVVS  P      R GW AAXXXXXXXXXXXXXXXX    NG                             AAAA P      YG XXX                XXXXX  XXXXXXXXX S P AR LYDYDPAGQ GM+A+  GQ
Sbjct: 1252 EDVENYVHAFVRARAPAGQRDKLKLAVHMSVVEGAKAAAPPEREIPAILGAFFDRAIEPRYNIEQDVVSAAPPPRRAERAGWGAAXXXXXXXXXXXXXXXXY--QNGA----------------------------AAAATP------YGAXXXXXX-----------XXXXXXXPLXXXXXXXXXXSAPTARALYDYDPAGQAGMLALRMGQ 1417
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13478.2600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KSK5_9PHAE2.410e-7089.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G521_ECTSI2.680e-6886.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C908_9STRA2.610e-2050.70P-loop containing nucleoside triphosphate hydrolas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13478contigE-fasciculatus_F_contig13478:1348..3573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMyTH4 domain
Ec32 orthologEc-00_008190.1
Exons3
Model size642
Cds size636
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13478.2600.1prot_E-fasciculatus_F_contig13478.2600.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13478 1348..3567 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927847.051157-CDS-E-fasciculatus_F_contig13478:1347..18101622927847.051157-CDS-E-fasciculatus_F_contig13478:1347..1810Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13478 1348..1810 -
1695995720.8490708-CDS-E-fasciculatus_F_contig13478:1347..18101695995720.8490708-CDS-E-fasciculatus_F_contig13478:1347..1810Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13478 1348..1810 -
1622927847.0659566-CDS-E-fasciculatus_F_contig13478:2188..22921622927847.0659566-CDS-E-fasciculatus_F_contig13478:2188..2292Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13478 2189..2292 -
1695995720.8599608-CDS-E-fasciculatus_F_contig13478:2188..22921695995720.8599608-CDS-E-fasciculatus_F_contig13478:2188..2292Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13478 2189..2292 -
1622927847.0829914-CDS-E-fasciculatus_F_contig13478:3498..35671622927847.0829914-CDS-E-fasciculatus_F_contig13478:3498..3567Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13478 3499..3567 -
1695995720.8713174-CDS-E-fasciculatus_F_contig13478:3498..35671695995720.8713174-CDS-E-fasciculatus_F_contig13478:3498..3567Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13478 3499..3567 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927847.099855-UTR-E-fasciculatus_F_contig13478:3567..35731622927847.099855-UTR-E-fasciculatus_F_contig13478:3567..3573Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13478 3568..3573 -
1695995720.8822343-UTR-E-fasciculatus_F_contig13478:3567..35731695995720.8822343-UTR-E-fasciculatus_F_contig13478:3567..3573Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13478 3568..3573 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13478.2600.1

>prot_E-fasciculatus_F_contig13478.2600.1 ID=prot_E-fasciculatus_F_contig13478.2600.1|Name=mRNA_E-fasciculatus_F_contig13478.2600.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=212bp
MENYVHYFVRCNAPEDTREKFKLAVHMSVYDGVKETAPSVKEIPPLLSGF
FEREISARYNIEEDVVSVKPTRPPPSRPGWAAAAASAAAASASAAAPAPA
GSSNGGYGGYGGYSAPPAANNTAAAGGYGGYSAPAAAAAPAAAAGGYGGG
GYGQQAAATNGGGADPAMPAMPAMAAPPLPPKPKPSEPQARVLYDYDPAG
QEGMVAVSAGQV
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mRNA from alignment at E-fasciculatus_F_contig13478:1348..3573-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13478.2600.1 ID=mRNA_E-fasciculatus_F_contig13478.2600.1|Name=mRNA_E-fasciculatus_F_contig13478.2600.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2226bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13478:1348..3573- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGACATGGAAAACTACGTGCACTACTTCGTGCGGTGCAATGCGCCGGA
AGACACTCGGGAGAAGTTCAAGCTGGTGAGAACGAGAACCATCCACGACC
TTTTATCCTTTATATATATACTTTGCTCTCTTGTTCCTTATCGGTTGTGG
TTGCTGTTGAAAGCCTAGGCTAGGCTAGGCTAGGCTAGGCTACGGTACCT
CTTTGTTGGTTGGTCGGTTGCTTGAAGTTGGAAGCCTGGGCTGCGCTAGG
CTAAGCTATACCAGCGCCTTCAACGCGCCGGCACAAGTGTTGCGAAGCTC
CAAGCAGCCGCCCATTGGCAGGCCACCATTATCGACGGAGTCAGTTGAGC
TATTAATAATACGCATGCACAGGAGATGAAAAGTGGCCGGGTGTAGAACT
TCAGGCGTCAAGTTTTGACTGGGGTGTGTGATTGACGGACGGTGTGTGGC
ACGAAGGGCCAGGCGAGAATGTCCCCCCGTCGTCGACTACCCATCGTCGT
TTTTGTCCGCGTGAGCTTACCGTCTATTGCCTTAAATAAATAGGCCCTGT
GGACCGATTTTCAAAGCTCGAAGGTTTCTGTACAGCAAAATACAGTAGCA
ACGACGGTGCCAAAAATAAAAATGGCAGCGGCGTTTGAACCGAGTGTCTC
GTCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGCTCACTGAAAACATACCATCACGTTCGTCGTGTAGTAA
CGAGCTTTGAAAATCGGTCAAACGGTGTTGTATCCCAGTCGACGTTGTTG
TTGTCATTGTTGTTGGGTCGTCGCCCTTTCGTCCCTCTGGCGTGTGTGTC
AGCTCTTGCCAAGCTTGTCTCACTTCATTGCCGCTCGCGTACATATGCGT
CGCCATGCGCCCGTCATCGAATCCCCCCCCGGCGAAGAGAAAAAAATTGC
CTCTCTTCACCGCTGCCGCGTCTGCGTCGCCATCCGCCCGTCTGGACATG
TTCTTCTTGTTGTTGTCTTGACATAAAAAACAGTTCCGGTCTCCGCTGAG
TACTGTACCTTCTAATGTCCGTACTGGTCCAACTGACGCAGAGGACGCCT
TCCACATGACGTCGTCGAAAAAACCTCCCCGACAAAGAAAAAAAAACCAC
GCCTCTCACGCAAACTCCACCCCGGCCCCCACACGCTGCGCGATCCCTGT
CTCTATCTCTCTCTGTCTCTCTCTCTGGCGGTCGCGTGTGTGCGGTTGGT
TCTGCTTGCCGCTGTGGTGGCTGTGCGTCAGGCCGTGCACATGTCCGTGT
ACGACGGCGTTAAGGAAACAGCCCCGAGCGTGAAGGAAATCCCCCCGCTG
CTCTCCGGCTTCTTCGAAAGGGAGATCAGCGCCAGGTTAGCAGGGAGAAA
CGAGGGGGCGACGGGCGGGGGGGGGGAGTTCTGGGTGCTGTGGGTGCTGT
GCCATTGGTTGTGCTGCGTGTTGTGTTCTTGTTCGATTCGACGGTGGCAT
GCTACCATTCGCAGGGGGTTGGATGGGACCAGCGTTTACCAAGTAGCCCA
ATTACCCCGACTCCTATATATATATATATTTTTTTTTTTATCTCGTGGAT
ATAAACATTGATTTTTTTTTTTGCGACACACACAGCAGGGCTCGTAGACG
TTTTGGTTGCTCGGTACTGTAGCTGTTGCGTCTTCTCACTACGCAACCCC
TCTTGCCACCATTCTCTTGACCCCTCTTGCCACCATTCTCTTGGTGGATG
CATGCACCGCTAGGTACAACATCGAGGAAGACGTGGTCAGCGTCAAGCCG
ACGCGACCCCCGCCGTCGCGCCCGGGCTGGGCCGCCGCCGCCGCCTCCGC
CGCCGCTGCCTCGGCGTCCGCCGCCGCCCCCGCCCCCGCCGGGAGTTCCA
ACGGCGGCTACGGCGGCTACGGAGGCTACTCCGCGCCGCCGGCCGCTAAC
AACACAGCGGCGGCGGGAGGCTACGGCGGATACTCCGCGCCCGCGGCGGC
GGCGGCGCCAGCAGCAGCTGCCGGGGGGTATGGGGGGGGCGGGTACGGGC
AGCAGGCGGCGGCAACGAACGGCGGGGGGGCGGACCCCGCGATGCCGGCC
ATGCCGGCGATGGCGGCGCCGCCACTGCCGCCGAAGCCCAAGCCGTCCGA
GCCGCAGGCCAGGGTCTTGTACGACTACGACCCGGCGGGGCAGGAGGGGA
TGGTGGCCGTTTCTGCGGGCCAGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13478:1348..3573-

>mRNA_E-fasciculatus_F_contig13478.2600.1 ID=mRNA_E-fasciculatus_F_contig13478.2600.1|Name=mRNA_E-fasciculatus_F_contig13478.2600.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1272bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13478:1348..3573- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAAAACTACGTGCACTACTTCGTGCGGTGCAATGCGCCGGAAGACAC
TCGGGAGAAGTTCAAGCTGATGGAAAACTACGTGCACTACTTCGTGCGGT
GCAATGCGCCGGAAGACACTCGGGAGAAGTTCAAGCTGGCCGTGCACATG
TCCGTGTACGACGGCGTTAAGGAAACAGCCCCGAGCGTGAAGGAAATCCC
CCCGCTGCTCTCCGGCTTCTTCGAAAGGGAGATCAGCGCCAGGCCGTGCA
CATGTCCGTGTACGACGGCGTTAAGGAAACAGCCCCGAGCGTGAAGGAAA
TCCCCCCGCTGCTCTCCGGCTTCTTCGAAAGGGAGATCAGCGCCAGGTAC
AACATCGAGGAAGACGTGGTCAGCGTCAAGCCGACGCGACCCCCGCCGTC
GCGCCCGGGCTGGGCCGCCGCCGCCGCCTCCGCCGCCGCTGCCTCGGCGT
CCGCCGCCGCCCCCGCCCCCGCCGGGAGTTCCAACGGCGGCTACGGCGGC
TACGGAGGCTACTCCGCGCCGCCGGCCGCTAACAACACAGCGGCGGCGGG
AGGCTACGGCGGATACTCCGCGCCCGCGGCGGCGGCGGCGCCAGCAGCAG
CTGCCGGGGGGTATGGGGGGGGCGGGTACGGGCAGCAGGCGGCGGCAACG
AACGGCGGGGGGGCGGACCCCGCGATGCCGGCCATGCCGGCGATGGCGGC
GCCGCCACTGCCGCCGAAGCCCAAGCCGTCCGAGCCGCAGGCCAGGGTCT
TGTACGACTACGACCCGGCGGGGCAGGAGGGGATGGTGGCCGTTTCTGCG
GGCCAGGTGGTACAACATCGAGGAAGACGTGGTCAGCGTCAAGCCGACGC
GACCCCCGCCGTCGCGCCCGGGCTGGGCCGCCGCCGCCGCCTCCGCCGCC
GCTGCCTCGGCGTCCGCCGCCGCCCCCGCCCCCGCCGGGAGTTCCAACGG
CGGCTACGGCGGCTACGGAGGCTACTCCGCGCCGCCGGCCGCTAACAACA
CAGCGGCGGCGGGAGGCTACGGCGGATACTCCGCGCCCGCGGCGGCGGCG
GCGCCAGCAGCAGCTGCCGGGGGGTATGGGGGGGGCGGGTACGGGCAGCA
GGCGGCGGCAACGAACGGCGGGGGGGCGGACCCCGCGATGCCGGCCATGC
CGGCGATGGCGGCGCCGCCACTGCCGCCGAAGCCCAAGCCGTCCGAGCCG
CAGGCCAGGGTCTTGTACGACTACGACCCGGCGGGGCAGGAGGGGATGGT
GGCCGTTTCTGCGGGCCAGGTG
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