mRNA_E-fasciculatus_F_contig13476.2599.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13476.2599.1
Unique NamemRNA_E-fasciculatus_F_contig13476.2599.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13476.2599.1 vs. uniprot
Match: D8LGJ4_ECTSI (Phospholipid-transporting ATPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ4_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 5.910e-23
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:    4 QDTPAQARSSNMGADLGQVEYVFSDKTGTLTQNLMKFKRCSVGGVIYG 147
            QDTPAQARSSNMGADLGQVEYVFSDKTGTLTQNLMKFKRCSVGGVIYG
Sbjct:  414 QDTPAQARSSNMGADLGQVEYVFSDKTGTLTQNLMKFKRCSVGGVIYG 461
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BLAST of mRNA_E-fasciculatus_F_contig13476.2599.1 vs. uniprot
Match: A0A183N0M6_9TREM (Uncharacterized protein n=2 Tax=Schistosoma TaxID=6181 RepID=A0A183N0M6_9TREM)

HSP 1 Score: 79.7 bits (195), Expect = 6.230e-18
Identity = 34/49 (69.39%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 DQDTPAQARSSNMGADLGQVEYVFSDKTGTLTQNLMKFKRCSVGGVIYG 147
            D DTPA AR+SN+  +LGQV Y+FSDKTGTLT+N+M+FKRCS+GG++YG
Sbjct:    5 DSDTPAMARTSNLNEELGQVRYLFSDKTGTLTRNVMEFKRCSIGGIMYG 53
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BLAST of mRNA_E-fasciculatus_F_contig13476.2599.1 vs. uniprot
Match: A0A6H5JDV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDV8_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 2.610e-17
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:   37 MGADLGQVEYVFSDKTGTLTQNLMKFKRCSVGGVIYG 147
            MGADLGQVEYVFSDKTGTLTQNLMKFKRCSVGGVIYG
Sbjct:    1 MGADLGQVEYVFSDKTGTLTQNLMKFKRCSVGGVIYG 37
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BLAST of mRNA_E-fasciculatus_F_contig13476.2599.1 vs. uniprot
Match: A0A836CHZ9_9STRA (Phospholipid-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHZ9_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.850e-17
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 DQDTPAQARSSNMGADLGQVEYVFSDKTGTLTQNLMKFKRCSVGGVIYG 147
            +QDTPA AR+SNM ADLGQV+Y+FSDKTGTLTQN+M FKRC+VG  IYG
Sbjct:  522 EQDTPALARTSNMNADLGQVQYIFSDKTGTLTQNVMTFKRCAVGDTIYG 570
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BLAST of mRNA_E-fasciculatus_F_contig13476.2599.1 vs. uniprot
Match: A0A095A2Y4_SCHHA (Putative phospholipid-transporting ATPase IB n=1 Tax=Schistosoma haematobium TaxID=6185 RepID=A0A095A2Y4_SCHHA)

HSP 1 Score: 79.7 bits (195), Expect = 1.580e-16
Identity = 34/49 (69.39%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 DQDTPAQARSSNMGADLGQVEYVFSDKTGTLTQNLMKFKRCSVGGVIYG 147
            D DTPA AR+SN+  +LGQV Y+FSDKTGTLT+N+M+FKRCS+GG++YG
Sbjct:  110 DSDTPAMARTSNLNEELGQVRYLFSDKTGTLTRNVMEFKRCSIGGIMYG 158
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BLAST of mRNA_E-fasciculatus_F_contig13476.2599.1 vs. uniprot
Match: A0A3Q0KJY3_SCHMA (Phospholipid-transporting ATPase n=5 Tax=Schistosoma mansoni TaxID=6183 RepID=A0A3Q0KJY3_SCHMA)

HSP 1 Score: 80.5 bits (197), Expect = 1.850e-16
Identity = 34/49 (69.39%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 DQDTPAQARSSNMGADLGQVEYVFSDKTGTLTQNLMKFKRCSVGGVIYG 147
            D DTPA AR+SN+  +LGQV Y+FSDKTGTLT+N+M+FKRCS+GG++YG
Sbjct:  342 DSDTPAMARTSNLNEELGQVRYIFSDKTGTLTRNVMEFKRCSIGGIMYG 390
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BLAST of mRNA_E-fasciculatus_F_contig13476.2599.1 vs. uniprot
Match: A0A7S2WP86_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WP86_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.020e-16
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    7 DTPAQARSSNMGADLGQVEYVFSDKTGTLTQNLMKFKRCSVGGVIY 144
            DTPA AR+SN   DLGQ+EY+FSDKTGTLTQN MKF++CSVGGVIY
Sbjct:   97 DTPALARTSNQNGDLGQIEYIFSDKTGTLTQNDMKFRKCSVGGVIY 142
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BLAST of mRNA_E-fasciculatus_F_contig13476.2599.1 vs. uniprot
Match: UPI000644C9B7 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644C9B7)

HSP 1 Score: 80.1 bits (196), Expect = 2.530e-16
Identity = 35/49 (71.43%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 DQDTPAQARSSNMGADLGQVEYVFSDKTGTLTQNLMKFKRCSVGGVIYG 147
            D DTPA AR+SN+  DLGQ++Y+FSDKTGTLTQN M+FK+CS+GGV YG
Sbjct:  448 DNDTPALARTSNLNEDLGQIDYIFSDKTGTLTQNKMEFKKCSIGGVSYG 496
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BLAST of mRNA_E-fasciculatus_F_contig13476.2599.1 vs. uniprot
Match: A0A183KBD6_9TREM (Uncharacterized protein n=2 Tax=Schistosoma curassoni TaxID=6186 RepID=A0A183KBD6_9TREM)

HSP 1 Score: 79.7 bits (195), Expect = 3.120e-16
Identity = 34/49 (69.39%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 DQDTPAQARSSNMGADLGQVEYVFSDKTGTLTQNLMKFKRCSVGGVIYG 147
            D DTPA AR+SN+  +LGQV Y+FSDKTGTLT+N+M+FKRCS+GG++YG
Sbjct:  312 DSDTPAMARTSNLNEELGQVRYLFSDKTGTLTRNVMEFKRCSIGGIMYG 360
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BLAST of mRNA_E-fasciculatus_F_contig13476.2599.1 vs. uniprot
Match: F0YJC7_AURAN (Phospholipid-transporting ATPase n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJC7_AURAN)

HSP 1 Score: 79.7 bits (195), Expect = 3.450e-16
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    7 DTPAQARSSNMGADLGQVEYVFSDKTGTLTQNLMKFKRCSVGGVIYG 147
            DTPA AR+SNM ADLG + +VFSDKTGTLTQN+MKFKRC+VGG +YG
Sbjct:  407 DTPALARTSNMNADLGMIAHVFSDKTGTLTQNIMKFKRCAVGGGVYG 453
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13476.2599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGJ4_ECTSI5.910e-23100.00Phospholipid-transporting ATPase n=1 Tax=Ectocarpu... [more]
A0A183N0M6_9TREM6.230e-1869.39Uncharacterized protein n=2 Tax=Schistosoma TaxID=... [more]
A0A6H5JDV8_9PHAE2.610e-17100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CHZ9_9STRA2.850e-1777.55Phospholipid-transporting ATPase n=1 Tax=Tribonema... [more]
A0A095A2Y4_SCHHA1.580e-1669.39Putative phospholipid-transporting ATPase IB n=1 T... [more]
A0A3Q0KJY3_SCHMA1.850e-1669.39Phospholipid-transporting ATPase n=5 Tax=Schistoso... [more]
A0A7S2WP86_9STRA2.020e-1678.26Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
UPI000644C9B72.530e-1671.43hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A183KBD6_9TREM3.120e-1669.39Uncharacterized protein n=2 Tax=Schistosoma curass... [more]
F0YJC7_AURAN3.450e-1676.60Phospholipid-transporting ATPase n=2 Tax=Aureococc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13476contigE-fasciculatus_F_contig13476:2819..2965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.4
Seed ortholog evalue5e-19
Seed eggNOG ortholog2880.D8LGJ4
Preferred nameDNF3
KEGG rclassRC00002
KEGG koko:K01509,ko:K01530,ko:K14802
KEGG TC3.A.3.8
KEGG ReactionR00086
KEGG Pathwayko00230,ko04742,map00230,map04742
GOsGO:0000749,GO:0003674,GO:0003824,GO:0004012,GO:0005215,GO:0005319,GO:0005548,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005798,GO:0005802,GO:0005886,GO:0005937,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006886,GO:0006892,GO:0006900,GO:0006996,GO:0008104,GO:0008150,GO:0009987,GO:0010033,GO:0010876,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015914,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019236,GO:0030133,GO:0030135,GO:0030136,GO:0030140,GO:0030427,GO:0031136,GO:0031137,GO:0031139,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032456,GO:0033036,GO:0034204,GO:0034613,GO:0042221,GO:0042623,GO:0042886,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043332,GO:0043492,GO:0043900,GO:0043902,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045184,GO:0045332,GO:0046907,GO:0046999,GO:0048193,GO:0048194,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051286,GO:0051641,GO:0051649,GO:0051716,GO:0061024,GO:0065007,GO:0065008,GO:0070727,GO:0070867,GO:0070887,GO:0071310,GO:0071444,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0097035,GO:0097708,GO:0098791,GO:0120025,GO:0120038,GO:2000241,GO:2000243
EggNOG free text desc.phospholipid-translocating ATPase activity
EggNOG OGsCOG0474@1,KOG0206@2759
EC3.6.1.3,3.6.3.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927846.9994032-CDS-E-fasciculatus_F_contig13476:2818..29651622927846.9994032-CDS-E-fasciculatus_F_contig13476:2818..2965Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13476 2819..2965 +
1695995720.8349752-CDS-E-fasciculatus_F_contig13476:2818..29651695995720.8349752-CDS-E-fasciculatus_F_contig13476:2818..2965Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13476 2819..2965 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13476.2599.1prot_E-fasciculatus_F_contig13476.2599.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13476 2819..2965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13476.2599.1

>prot_E-fasciculatus_F_contig13476.2599.1 ID=prot_E-fasciculatus_F_contig13476.2599.1|Name=mRNA_E-fasciculatus_F_contig13476.2599.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=49bp
DQDTPAQARSSNMGADLGQVEYVFSDKTGTLTQNLMKFKRCSVGGVIYG
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mRNA from alignment at E-fasciculatus_F_contig13476:2819..2965+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13476.2599.1 ID=mRNA_E-fasciculatus_F_contig13476.2599.1|Name=mRNA_E-fasciculatus_F_contig13476.2599.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=147bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13476:2819..2965+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GATCAGGACACCCCCGCGCAAGCGCGGTCTTCGAATATGGGGGCCGACCT
AGGACAGGTGGAGTACGTCTTCAGCGATAAGACGGGGACGCTGACGCAGA
ACCTCATGAAGTTCAAGCGCTGCAGCGTGGGCGGGGTGATCTACGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13476:2819..2965+

>mRNA_E-fasciculatus_F_contig13476.2599.1 ID=mRNA_E-fasciculatus_F_contig13476.2599.1|Name=mRNA_E-fasciculatus_F_contig13476.2599.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=294bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13476:2819..2965+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GATCAGGACACCCCCGCGCAAGCGCGGTCTTCGAATATGGGGGCCGACCT
AGGACAGGTGGAGTACGTCTTCAGCGATAAGACGGGGACGCTGACGCAGA
ACCTCATGAAGTTCAAGCGCTGCAGCGTGGGCGGGGTGATCTACGGGGAT
CAGGACACCCCCGCGCAAGCGCGGTCTTCGAATATGGGGGCCGACCTAGG
ACAGGTGGAGTACGTCTTCAGCGATAAGACGGGGACGCTGACGCAGAACC
TCATGAAGTTCAAGCGCTGCAGCGTGGGCGGGGTGATCTACGGG
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