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Homology
BLAST of mRNA_E-fasciculatus_F_contig13449.2587.1 vs. uniprot
Match: D7FH00_ECTSI (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH00_ECTSI) HSP 1 Score: 385 bits (988), Expect = 3.870e-125 Identity = 208/297 (70.03%), Postives = 230/297 (77.44%), Query Frame = 1
Query: 10 SAATAAEVTSPAQNIPRRRPHLRHPRSAAPERPGGSPAAAAASTLGGDGGNVSGGFGQRRSLSENLEAYVESTEACASRMEYTLSQCDFQNRQTLEWSYGEGDSASDCETPLPEGGSLKCDHVEWNSGEGIAIGVLAGVGVAVSLCFWLALSRYKQSRVVRLGQPASCKTFVVGIGVTFLSILALLGATTDVTCALRLWGYSAGFDLAFCALTLKMRSACGAAETSMKQAYSMRLSRRMVLLLLLLDVAGDVAVLSRWTADDCGVEYESVGGGAFIRRNSCMACSNLLLWAWIALKV 900
+AA AAE T PA++ PRRRPHLRH RSAAPERPGGS A AA LGGDGG+++ GF QRRSL E+LEAYV+S EACASRMEYTLSQCDFQNRQTLEWSYGEGD+A +CETPLPEGGS+KCDHVEW+SGEGIAIG+LAGVGVA+SLCFW ALSRYKQSRVVRLGQPA KTFVVGIGVTFLSI ALLGATTD+TCALRLWGYSAGFDLAF ALTLKMRSAC AAE SVGGGAFI R+SC++C++ L+W+WIALKV
Sbjct: 5 AAAAAAEATPPAESTPRRRPHLRHLRSAAPERPGGSLEAVAA-VLGGDGGSINDGFDQRRSLFEDLEAYVDSNEACASRMEYTLSQCDFQNRQTLEWSYGEGDNALNCETPLPEGGSVKCDHVEWSSGEGIAIGILAGVGVALSLCFWGALSRYKQSRVVRLGQPALSKTFVVGIGVTFLSIFALLGATTDLTCALRLWGYSAGFDLAFGALTLKMRSACSAAE--------------------------------------------SVGGGAFITRSSCVSCNHGLMWSWIALKV 256
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 900 |
| Cds size | 900 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13449.2587.1 >prot_E-fasciculatus_F_contig13449.2587.1 ID=prot_E-fasciculatus_F_contig13449.2587.1|Name=mRNA_E-fasciculatus_F_contig13449.2587.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=300bp
APESAATAAEVTSPAQNIPRRRPHLRHPRSAAPERPGGSPAAAAASTLGG
DGGNVSGGFGQRRSLSENLEAYVESTEACASRMEYTLSQCDFQNRQTLEW
SYGEGDSASDCETPLPEGGSLKCDHVEWNSGEGIAIGVLAGVGVAVSLCF
WLALSRYKQSRVVRLGQPASCKTFVVGIGVTFLSILALLGATTDVTCALR
LWGYSAGFDLAFCALTLKMRSACGAAETSMKQAYSMRLSRRMVLLLLLLD
VAGDVAVLSRWTADDCGVEYESVGGGAFIRRNSCMACSNLLLWAWIALKV back to topmRNA from alignment at E-fasciculatus_F_contig13449:78..3475+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig13449.2587.1 ID=mRNA_E-fasciculatus_F_contig13449.2587.1|Name=mRNA_E-fasciculatus_F_contig13449.2587.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3398bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13449:78..3475+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGCCTGAATCTGCCGCCACCGCTGCTGAAGTAACTTCTCCGGCCCAGAA
CATCCCCCGCCGACGACCACATCTACGGCATCCCCGATCGGCGGCGCCCG
AACGGCCCGGTGGGTCGCCCGCGGCGGCTGCGGCTTCTACGCTAGGCGGC
GATGGTGGTAACGTCAGCGGTGGCTTTGGTCAGCGGAGATCCTTGTCTGA
AAATCTGGAAGCGTACGTAGAATCGACCGAGGTGAGATGAGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGTATGTAGGTGTTGATGTCGAT
GGTACTCGCAAGACCTTGGCTTGTTGGCCGATGCATGGCGCAAATTGCAT
GTGTCACGAGAGGTGGGTCGGGGGGAGAGTAGGGGCCTCCGTTTCGGTCC
TTTCAACACACGACTACGTCATGTACGTTGTATCATTCACGCAAACCGCC
GACTAACAAACAATATCCCCCCCGCCCCACCGCCCGCCATGTTTCGAGCC
TCCTCCGTGTCGTGGAACAAAACGCGAACAACGCGGCGGCTTGCCCACTC
CACACGAAAGGTGCACGTATGCATACTAAACACCTAATTGGTGCCCTGTT
CGGCCTGTGAACATGATTTGCACCTTTAGGCTTGCGCGTCGAGGATGGAG
TACACCCTCTCGCAGTGCGACTTCCAGAACCGACAGACTCTCGAGTGGAG
CTACGGGGAGGGGGACAGCGCCTCGGATTGCGAGACGCCCCTGCCCGAAG
GGGGCTCCTTAAAGTGCGACCACGTCGAGTGGAATTCAGGTAAGGCTCTC
GCGTCTCTTGTATCGACACACCCTTCCCCTGCTTGTCAGTGTTACTGCCG
TTATGTCTCGCCATGGGTGTGGGTGTTGGTGTCGGTAACGTAGCTTTGTT
TGCCACGTTGCTGTCGTCGTCGGTCTTGCAAGTGTATTTTAGTTTTTATG
GTTGTTGTTGTTTTTGGTGGTGGCGGTGTCGTCGTGTGGTGTGTACGTGG
GTGCTCATGTCTGATGATTGTTTCTCCGGACGGCAGCAGTCCTGCCTCGG
AACGAACCAGTGTCTGCCGTGCCACCACGCCGACGAGGAACACTCTCTGC
TGTCTGTCTTCCCTCGTCCGTATGCTGTGTGGACATAATTTGTCGGCGGT
GATGGTGGCGGTGGCGGTGGTGGTGGTGTGTGACGTTGACATACTCTGCC
CTTGCACCTGCATCATTATCGCATCACGTGTCGGGTGTCGCGTTTGGCAG
GCGAGGGAATCGCGATCGGGGTCCTGGCGGGGGTAGGGGTGGCCGTGTCG
CTGTGCTTCTGGTTGGCCCTGTCACGGTACAAGCAGTCCAGGGTCGTGCG
CCTGGGCCAACCGGCCTCGTGCAAGACCTTCGTGGTGAGTTTGAGGCGTA
GATCGGGGCGGCGTCCCCATGTTTTGCATGCCGTAGTTGCTGGACTGTTG
ACCACGCGTCCTCGAGAGGGAGGGGAACAGCTGCAGCAGCACCGGAGGTA
TAACCATGTTGCGCAGGAACAGGTTCGAGGCGCTGCTTCGCTTGTTCCGG
TAGGGTGGCAAATGGCGTTTTTTTTTTTGCCTGTTGCAGGTGTCGTGCCT
CTCACAGAAGCACATCCCGACGCGCAGTCCGAAACACACACACCACGGTT
CTCTCGCTGCGATTTTGACACCACCTGTACGGCGGTACGTGCCTGTTTTT
CGCGGCTGTTCGGTGGTGCTGGCTCCCCAACCCCACAGGTCGGCATCGGC
GTGACCTTCCTGTCTATCCTCGCCCTCCTCGGGGCCACCACGGACGTCAC
CTGCGCGTTGAGGCTGTGGGGTTACAGCGCCGGGTTCGACCTCGCCTTCT
GCGCGCTGACGCTCAAGATGCGGAGCGCGTGCGGCGCAGCCGAGGTGAAA
TAGAGAGAGGGAGGGAGGGAGGGAGGGAGGGCGGGCGGCAGGGGATGAAA
GGAATGTCGCCCAGGACGATGGCATGCGGCTCGTGCTGCTGGTTTGCCAG
CGGGGCGTGTGAGCGTTGGCGGGGGGGGAGAGGTCGCTCGTTTGGTCAAT
CACTCTCTCTTTTAGTTTTTTCAGGGTAACGGGGTGCGGAGGGGTCGGGA
GGCGATCAAAACCGCTAAAAAATGGTCTTCCTCTCGTCCGCTTGTTGTTT
GTGTAGCCGCAGAGAGGCATATGCGTGGGTGAGGTGCCCTGGCCTTGTGT
TTGTAGTTGAATGACCCGTGCCTAAGTAGCAGTAGCTCACCGCTGATGAT
GGGAAGTACTCAAATGCCTAATCGCTCGACCATCCTTAACTTTTTGGCAC
GCCTATGTGTCGATCGATCTCTCCGCGACACATGACGACGACGACGATCG
CGACGGGTTCTGTGGTTGTCACGACACGACTGCGACGTTCAGACCTCGAT
GAAGCAGGCGTACAGCATGAGGCTGTCCAGGCGGATGGTGCTGCTGTTGC
TGCTGCTTGACGTGGCGGGAGACGTGGCCGTGCTTTCCCGGTGGACAGCG
TCTTTTGGGTGAGGGAGCTTGAGGGACAGCGATGTATCATTTGTATTTGT
GATTTTTTCAGTTCTGTTTCTCGAGAGACAGGCGGGCACGCGTGGTTGAA
GCCCTCTGCGAGCACTCGTACACAACTCCCCGCCGCTTAGAGTCTACCCA
CTCTGAACCTGGTACTGCTGTGAGCTTGCTCTTACCAGCATTCATGATAA
TTTTGCGTGGTGGTTCATCTGGCCCATGAGTAAGCATGGCAGAGACTTGG
TTGCTCTCGTGAAGGTTGCGAGGCAGTGCTGCGCCACGCTGTTTTGTCGG
CCCTGCCCTGTCTTGTTGTTTTTTCCCTGGTGAGGACGACCTTGCATTGC
TTCCTTCGGGCTATTGTAGCATTTTTGTGGTGGGATCGGGGTAAATGCAG
ATGCAGGGTTGTGGTGATGGTGTGTTTCCATCCTTTGAGCGAGTCAGCTG
TTGCCTGTCGACCAGGCGCTTAAGTAGCAACCGCAACAGCAGCAGCAGCG
GCTACAGCAGGAGTAGGTTGGTGCAGCATGTACAACATGCGTACTCGAGC
GCGTGCTGATTTGTGTTCCACTTGCCCTGTCTTCACCACACGGCATGGTG
TGTTTGGATTGGCGGTGAGGGTTAAGGTCGCCTTCTGTTTTCGCTCGTCA
CCGCGCACGGCGGGGCGGTTGCCAGCGTAATAAGTCGTTCGTTCTTTCCC
CGCACATGATTATGACATTTCCATCTGTATCTGTATTTTCCGCCGTTGTC
GTTGTGTTGTTTAATTTATCTCCCCACACGTGGCAGCGATGACTGCGGGG
TGGAGTACGAGTCCGTGGGCGGGGGAGCGTTCATCAGGCGCAACTCGTGC
ATGGCTTGCAGCAACCTGCTCTTGTGGGCTTGGATTGCTCTGAAGGTG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig13449:78..3475+ >mRNA_E-fasciculatus_F_contig13449.2587.1 ID=mRNA_E-fasciculatus_F_contig13449.2587.1|Name=mRNA_E-fasciculatus_F_contig13449.2587.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1800bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13449:78..3475+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGCCTGAATCTGCCGCCACCGCTGCTGAAGTAACTTCTCCGGCCCAGAA
CATCCCCCGCCGACGACCACATCTACGGCATCCCCGATCGGCGGCGCCCG
AACGGCCCGGTGGGTCGCCCGCGGCGGCTGCGGCTTCTACGCTAGGCGGC
GATGGTGGTAACGTCAGCGGTGGCTTTGGTCAGCGGAGATCCTTGTCTGA
AAATCTGGAAGCGTACGTAGAATCGACCGAGGCGCCTGAATCTGCCGCCA
CCGCTGCTGAAGTAACTTCTCCGGCCCAGAACATCCCCCGCCGACGACCA
CATCTACGGCATCCCCGATCGGCGGCGCCCGAACGGCCCGGTGGGTCGCC
CGCGGCGGCTGCGGCTTCTACGCTAGGCGGCGATGGTGGTAACGTCAGCG
GTGGCTTTGGTCAGCGGAGATCCTTGTCTGAAAATCTGGAAGCGTACGTA
GAATCGACCGAGGCTTGCGCGTCGAGGATGGAGTACACCCTCTCGCAGTG
CGACTTCCAGAACCGACAGACTCTCGAGTGGAGCTACGGGGAGGGGGACA
GCGCCTCGGATTGCGAGACGCCCCTGCCCGAAGGGGGCTCCTTAAAGTGC
GACCACGTCGAGTGGAATTCAGGCTTGCGCGTCGAGGATGGAGTACACCC
TCTCGCAGTGCGACTTCCAGAACCGACAGACTCTCGAGTGGAGCTACGGG
GAGGGGGACAGCGCCTCGGATTGCGAGACGCCCCTGCCCGAAGGGGGCTC
CTTAAAGTGCGACCACGTCGAGTGGAATTCAGGCGAGGGAATCGCGATCG
GGGTCCTGGCGGGGGTAGGGGTGGCCGTGTCGCTGTGCTTCTGGTTGGCC
CTGTCACGGTACAAGCAGTCCAGGGTCGTGCGCCTGGGCCAACCGGCCTC
GTGCAAGACCTTCGTGGCGAGGGAATCGCGATCGGGGTCCTGGCGGGGGT
AGGGGTGGCCGTGTCGCTGTGCTTCTGGTTGGCCCTGTCACGGTACAAGC
AGTCCAGGGTCGTGCGCCTGGGCCAACCGGCCTCGTGCAAGACCTTCGTG
GTCGGCATCGGCGTGACCTTCCTGTCTATCCTCGCCCTCCTCGGGGCCAC
CACGGACGTCACCTGCGCGTTGAGGCTGTGGGGTTACAGCGCCGGGTTCG
ACCTCGCCTTCTGCGCGCTGACGCTCAAGATGCGGAGCGCGTGCGGCGCA
GCCGAGGTCGGCATCGGCGTGACCTTCCTGTCTATCCTCGCCCTCCTCGG
GGCCACCACGGACGTCACCTGCGCGTTGAGGCTGTGGGGTTACAGCGCCG
GGTTCGACCTCGCCTTCTGCGCGCTGACGCTCAAGATGCGGAGCGCGTGC
GGCGCAGCCGAGACCTCGATGAAGCAGGCGTACAGCATGAGGCTGTCCAG
GCGGATGGTGCTGCTGTTGCTGCTGCTTGACGTGGCGGGAGACGTGGCCG
TGCTTTCCCGGTGGACAGCACCTCGATGAAGCAGGCGTACAGCATGAGGC
TGTCCAGGCGGATGGTGCTGCTGTTGCTGCTGCTTGACGTGGCGGGAGAC
GTGGCCGTGCTTTCCCGGTGGACAGCCGATGACTGCGGGGTGGAGTACGA
GTCCGTGGGCGGGGGAGCGTTCATCAGGCGCAACTCGTGCATGGCTTGCA
GCAACCTGCTCTTGTGGGCTTGGATTGCTCTGAAGGTGCGATGACTGCGG
GGTGGAGTACGAGTCCGTGGGCGGGGGAGCGTTCATCAGGCGCAACTCGT
GCATGGCTTGCAGCAACCTGCTCTTGTGGGCTTGGATTGCTCTGAAGGTG back to top
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