mRNA_E-fasciculatus_F_contig13443.2585.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13443.2585.1
Unique NamemRNA_E-fasciculatus_F_contig13443.2585.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13443.2585.1 vs. uniprot
Match: A0A6H5L064_9PHAE (DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L064_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.030e-28
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1
Query:    1 GINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARLEV 156
            GINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARLEV
Sbjct:  307 GINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARLEV 358          
BLAST of mRNA_E-fasciculatus_F_contig13443.2585.1 vs. uniprot
Match: D7FR28_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR28_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 3.160e-27
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1
Query:    1 GINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARLE 153
            GINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARLE
Sbjct:  887 GINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARLE 937          
BLAST of mRNA_E-fasciculatus_F_contig13443.2585.1 vs. uniprot
Match: A0A425DFL9_9STRA (DNA helicase (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425DFL9_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.890e-20
Identity = 39/66 (59.09%), Postives = 56/66 (84.85%), Query Frame = 1
Query:    1 GINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARL----EVRTVVDMMQDT 186
            GINKPDVRYVIHHS+P+++THFYQESGRAGRDGL ++C+V+++Y+D +R      +R V+D+ ++T
Sbjct:  239 GINKPDVRYVIHHSLPQSITHFYQESGRAGRDGLHAECVVYYSYKDYSRQVHFQNLRHVMDLCENT 304          
BLAST of mRNA_E-fasciculatus_F_contig13443.2585.1 vs. uniprot
Match: A0A397AAD3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AAD3_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 8.760e-20
Identity = 39/65 (60.00%), Postives = 52/65 (80.00%), Query Frame = 1
Query:    1 GINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARLEVRTVVDMMQDTTPP 195
            GINKPDVRYVIHHS+P+++THFYQESGRAGRDGL ++C+V+++Y+D     +R  +  M   TPP
Sbjct:  343 GINKPDVRYVIHHSLPQSITHFYQESGRAGRDGLHAECVVYYSYKDYVNDGIR--LHCMGHVTPP 405          
BLAST of mRNA_E-fasciculatus_F_contig13443.2585.1 vs. uniprot
Match: A0A7S4EMT8_9STRA (DNA helicase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EMT8_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.190e-19
Identity = 37/51 (72.55%), Postives = 48/51 (94.12%), Query Frame = 1
Query:    1 GINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARLE 153
            GI+KPDVRYVIH+SMPK+LTH+YQESGRAGRDG D++C++F++Y+DK  LE
Sbjct:  813 GIDKPDVRYVIHYSMPKSLTHYYQESGRAGRDGEDAECVLFYSYKDKQVLE 863          
BLAST of mRNA_E-fasciculatus_F_contig13443.2585.1 vs. uniprot
Match: A0A482RQR6_9ARCH (RecQ family ATP-dependent DNA helicase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RQR6_9ARCH)

HSP 1 Score: 89.0 bits (219), Expect = 2.310e-19
Identity = 36/50 (72.00%), Postives = 48/50 (96.00%), Query Frame = 1
Query:    1 GINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARL 150
            GINKPDVRYV+HHSMPK++T+FYQESGRAGRDG  ++CI++F+++DKA+L
Sbjct:  329 GINKPDVRYVLHHSMPKSITNFYQESGRAGRDGAIAECILYFSFKDKAKL 378          
BLAST of mRNA_E-fasciculatus_F_contig13443.2585.1 vs. uniprot
Match: A0A6A5A8L4_9STRA (ATP-dependent DNA helicase n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A8L4_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.950e-19
Identity = 35/49 (71.43%), Postives = 47/49 (95.92%), Query Frame = 1
Query:    1 GINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKAR 147
            GINKPDVRYVIHHS+P+++THFYQESGRAGRDGL ++C+V+++Y+D +R
Sbjct:  357 GINKPDVRYVIHHSLPQSITHFYQESGRAGRDGLHAECVVYYSYKDYSR 405          
BLAST of mRNA_E-fasciculatus_F_contig13443.2585.1 vs. uniprot
Match: A0A485KTU5_9STRA (ATP-dependent DNA helicase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KTU5_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.960e-19
Identity = 36/49 (73.47%), Postives = 46/49 (93.88%), Query Frame = 1
Query:    1 GINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKAR 147
            GINKPDVRYVIHHS+P+++THFYQESGRAGRDGL S C+V+++Y+D +R
Sbjct:  393 GINKPDVRYVIHHSLPQSITHFYQESGRAGRDGLPSTCLVYYSYKDYSR 441          
BLAST of mRNA_E-fasciculatus_F_contig13443.2585.1 vs. uniprot
Match: A0A7S0KZB9_9STRA (DNA helicase (Fragment) n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0KZB9_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 9.810e-19
Identity = 35/47 (74.47%), Postives = 44/47 (93.62%), Query Frame = 1
Query:    1 GINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDK 141
            GI+KPDVRYVIH+SMPK++TH+YQESGRAGRDG  + CI+F+AY+DK
Sbjct:  227 GIDKPDVRYVIHYSMPKSITHYYQESGRAGRDGAKADCILFYAYKDK 273          
BLAST of mRNA_E-fasciculatus_F_contig13443.2585.1 vs. uniprot
Match: B8BWN4_THAPS (ATP-dependent DNA helicase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BWN4_THAPS)

HSP 1 Score: 87.4 bits (215), Expect = 1.340e-18
Identity = 36/52 (69.23%), Postives = 48/52 (92.31%), Query Frame = 1
Query:    1 GINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARLEV 156
            GI+KPDVRYV+H+SMPK++TH+YQESGRAGRDG ++ CI+F+AY+DK  LE+
Sbjct:  280 GIDKPDVRYVMHYSMPKSITHYYQESGRAGRDGGNADCILFYAYKDKKTLEM 331          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13443.2585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L064_9PHAE1.030e-28100.00DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FR28_ECTSI3.160e-27100.00DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A425DFL9_9STRA1.890e-2059.09DNA helicase (Fragment) n=1 Tax=Aphanomyces astaci... [more]
A0A397AAD3_9STRA8.760e-2060.00Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A7S4EMT8_9STRA2.190e-1972.55DNA helicase n=1 Tax=Pseudo-nitzschia australis Ta... [more]
A0A482RQR6_9ARCH2.310e-1972.00RecQ family ATP-dependent DNA helicase (Fragment) ... [more]
A0A6A5A8L4_9STRA2.950e-1971.43ATP-dependent DNA helicase n=2 Tax=Aphanomyces ast... [more]
A0A485KTU5_9STRA2.960e-1973.47ATP-dependent DNA helicase n=1 Tax=Aphanomyces ste... [more]
A0A7S0KZB9_9STRA9.810e-1974.47DNA helicase (Fragment) n=1 Tax=Asterionellopsis g... [more]
B8BWN4_THAPS1.340e-1869.23ATP-dependent DNA helicase (Fragment) n=1 Tax=Thal... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13443contigE-fasciculatus_F_contig13443:3358..3555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.9
Seed ortholog evalue2.3e-22
Seed eggNOG ortholog2880.D7FR28
KEGG koko:K03654,ko:K10901
KEGG Pathwayko03018,ko03440,ko03460,map03018,map03440,map03460
KEGG ModuleM00295,M00414
EggNOG free text desc.four-way junction helicase activity
EggNOG OGsCOG0514@1,KOG0351@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927845.159522-CDS-E-fasciculatus_F_contig13443:3357..35551622927845.159522-CDS-E-fasciculatus_F_contig13443:3357..3555Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13443 3358..3555 -
1695995719.980822-CDS-E-fasciculatus_F_contig13443:3357..35551695995719.980822-CDS-E-fasciculatus_F_contig13443:3357..3555Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13443 3358..3555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13443.2585.1prot_E-fasciculatus_F_contig13443.2585.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13443 3358..3555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13443.2585.1

>prot_E-fasciculatus_F_contig13443.2585.1 ID=prot_E-fasciculatus_F_contig13443.2585.1|Name=mRNA_E-fasciculatus_F_contig13443.2585.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=66bp
GINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARL
EVRTVVDMMQDTTPP*
back to top

mRNA from alignment at E-fasciculatus_F_contig13443:3358..3555-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13443.2585.1 ID=mRNA_E-fasciculatus_F_contig13443.2585.1|Name=mRNA_E-fasciculatus_F_contig13443.2585.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=198bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13443:3358..3555- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGAATCAACAAGCCTGATGTCCGGTACGTGATCCACCACTCCATGCCCAA GACCCTGACCCACTTCTACCAGGAGTCAGGGCGGGCGGGGAGGGACGGCC TGGACTCCAAGTGCATCGTCTTCTTCGCCTACCGCGACAAGGCCCGCTTG GAGGTACGTACCGTTGTTGACATGATGCAAGATACCACACCCCCTTGA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13443:3358..3555-

>mRNA_E-fasciculatus_F_contig13443.2585.1 ID=mRNA_E-fasciculatus_F_contig13443.2585.1|Name=mRNA_E-fasciculatus_F_contig13443.2585.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=396bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13443:3358..3555- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGAATCAACAAGCCTGATGTCCGGTACGTGATCCACCACTCCATGCCCAA
GACCCTGACCCACTTCTACCAGGAGTCAGGGCGGGCGGGGAGGGACGGCC
TGGACTCCAAGTGCATCGTCTTCTTCGCCTACCGCGACAAGGCCCGCTTG
GAGGTACGTACCGTTGTTGACATGATGCAAGATACCACACCCCCTTGAGG
AATCAACAAGCCTGATGTCCGGTACGTGATCCACCACTCCATGCCCAAGA
CCCTGACCCACTTCTACCAGGAGTCAGGGCGGGCGGGGAGGGACGGCCTG
GACTCCAAGTGCATCGTCTTCTTCGCCTACCGCGACAAGGCCCGCTTGGA
GGTACGTACCGTTGTTGACATGATGCAAGATACCACACCCCCTTGA
back to top