mRNA_E-fasciculatus_F_contig1344.2580.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1344.2580.1
Unique NamemRNA_E-fasciculatus_F_contig1344.2580.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1344.2580.1 vs. uniprot
Match: D7FW96_ECTSI (Ankyrin, TRAF-type zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW96_ECTSI)

HSP 1 Score: 241 bits (615), Expect = 2.090e-71
Identity = 123/127 (96.85%), Postives = 123/127 (96.85%), Query Frame = 3 
Query:    3 WVGETDMENRFAVTERVAGAVWREITTVAAMGREEKGRRRALRIKMRKQEDLIKAMDAAIEDGYLKAPEVIALCQEGASIDRETENGGTALIKAAEEDPHAPNHAWVRNEEGWEVLAAALLLDRRIH 383
            WVGETDMEN FAVTERVAGAVWREITTVAAMGREEKGRRRALRIKMRKQEDLIKAMDAAIEDGYLKAPEVIALCQEGASIDRETENG TALI AAEEDPHAPNH WVRNEEGWEVLAAALLLDRRIH
Sbjct: 1337 WVGETDMENHFAVTERVAGAVWREITTVAAMGREEKGRRRALRIKMRKQEDLIKAMDAAIEDGYLKAPEVIALCQEGASIDRETENGCTALIIAAEEDPHAPNHTWVRNEEGWEVLAAALLLDRRIH 1463
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BLAST of mRNA_E-fasciculatus_F_contig1344.2580.1 vs. uniprot
Match: A0A7S1TZF4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZF4_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.100e-14
Identity = 50/124 (40.32%), Postives = 64/124 (51.61%), Query Frame = 3 
Query:    3 WVGETDMENRFAVTERVAGAVWREITTVAAMGREEKGRRRALRIKMRKQEDLIKAMDAAIEDGYLKAPEVIALCQEGASIDRETENGGTALIKAAEEDPHAPNHAWVRNEEGWEVLAAALLLDR 374
            WV + D +NR+     +A  VW+EI  +AA G  E      LR + RK  +L   M  AI    +     +A  ++G  ID ET  G T L+KA EEDP  P HAW  N EG  VL+   LLDR
Sbjct: 1353 WVKKRDPKNRWTKDLNMATKVWQEIEKIAAAGAAEXXXXXRLREQTRKMRELGGHMTDAIHRNDIYGGMKVA--EKGLEIDHETPEGTTLLMKACEEDPEGPGHAWHLNSEGARVLSVVFLLDR 1474
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1344.2580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW96_ECTSI2.090e-7196.85Ankyrin, TRAF-type zinc finger protein n=1 Tax=Ect... [more]
A0A7S1TZF4_9STRA1.100e-1440.32Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1344contigE-fasciculatus_F_contig1344:1410..3246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score229.9
Seed ortholog evalue6.1e-58
Seed eggNOG ortholog2880.D7FW96
KEGG koko:K08873
KEGG Pathwayko03015,map03015
EggNOG free text desc.TNF receptor-associated factor
EggNOG OGsCOG0666@1,KOG0297@1,KOG0297@2759,KOG4177@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03019
Hectar predicted targeting categoryother localisation
Exons3
Model size383
Cds size363
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1344.2580.1prot_E-fasciculatus_F_contig1344.2580.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1344 1430..3246 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927844.6264296-UTR-E-fasciculatus_F_contig1344:1409..14291622927844.6264296-UTR-E-fasciculatus_F_contig1344:1409..1429Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1344 1410..1429 +
1695995719.7493718-UTR-E-fasciculatus_F_contig1344:1409..14291695995719.7493718-UTR-E-fasciculatus_F_contig1344:1409..1429Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1344 1410..1429 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927844.6430748-CDS-E-fasciculatus_F_contig1344:1429..15461622927844.6430748-CDS-E-fasciculatus_F_contig1344:1429..1546Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1344 1430..1546 +
1695995719.7601945-CDS-E-fasciculatus_F_contig1344:1429..15461695995719.7601945-CDS-E-fasciculatus_F_contig1344:1429..1546Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1344 1430..1546 +
1622927844.6671145-CDS-E-fasciculatus_F_contig1344:2424..25141622927844.6671145-CDS-E-fasciculatus_F_contig1344:2424..2514Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1344 2425..2514 +
1695995719.7686968-CDS-E-fasciculatus_F_contig1344:2424..25141695995719.7686968-CDS-E-fasciculatus_F_contig1344:2424..2514Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1344 2425..2514 +
1622927844.6888127-CDS-E-fasciculatus_F_contig1344:3090..32461622927844.6888127-CDS-E-fasciculatus_F_contig1344:3090..3246Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1344 3091..3246 +
1695995719.7771614-CDS-E-fasciculatus_F_contig1344:3090..32461695995719.7771614-CDS-E-fasciculatus_F_contig1344:3090..3246Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1344 3091..3246 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1344.2580.1

>prot_E-fasciculatus_F_contig1344.2580.1 ID=prot_E-fasciculatus_F_contig1344.2580.1|Name=mRNA_E-fasciculatus_F_contig1344.2580.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=121bp
MENRFAVTERVAGAVWREITTVAAMGREEKGRRRALRIKMRKQEDLIKAM
DAAIEDGYLKAPEVIALCQEGASIDRETENGGTALIKAAEEDPHAPNHAW
VRNEEGWEVLAAALLLDRRIH
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mRNA from alignment at E-fasciculatus_F_contig1344:1410..3246+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1344.2580.1 ID=mRNA_E-fasciculatus_F_contig1344.2580.1|Name=mRNA_E-fasciculatus_F_contig1344.2580.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1837bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1344:1410..3246+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTGGGTCGGGGAAACCGACATGGAAAATCGCTTCGCGGTGACGGAGAGG
GTCGCGGGAGCCGTGTGGAGAGAGATCACGACCGTGGCGGCCATGGGGAG
AGAAGAGAAGGGCAGGCGGAGGGCTTTGCGCATTAAGGTGCGTGCGTCTG
TCTGTTCGTCTTAAGCTGTATCTACATCGGTATAGTGTGGCGTACAAGAA
CATGATACGATATGATTCACGGACGGAACGCTGTTGCTCGAGTGTTAGCT
TTTACATCTTCAAGTTTTCATTGATTTGAACCGGGTGATCAAAGCGGTGG
GGAAGATGGGGAGAAAGACAAGGGGGGCATTTTGCGTCGAGGTTAGTTTG
TTGGGGATGATGCATGTGATGTGTTGTACGTGTGGTCATACTTTTATCTC
TCCCTGCCTAGCGCTGTTCGCGGTATGAACGGATTTCAATGATCAATCTT
TGTCCAGTCACAGAGGTAACCAGAGGCTGGACATTACTGTTCAATACCGG
GACTAGACCCATCGGATGGACCACTGATTGTACGGGGGGGGGGCTACTAG
TTCGTTGCTCACTATTAATAGGTATTGACCAAGGACCGTTCAGTAACTCA
GTAAAAAAACGGAGCACCGCGACTTTTCATGGGTCAAAAGCCGCTAGAGA
GGTCAACAGCGACCGCACGGCCCGTTCTTCCATCGCCACGCCCGCCCCAA
GTCGAACGAGCCTGCCTGTCCACCAATTTCCGAGATGATCGTCTTCGTAA
AAAATCCGGGAACGGCAAAGCAAGCCCGAGAACGAAACACACGCGTCCAT
GCAACAACGATAGTCAAGTTCTCAACACGATGGAAACATCTATCCACACC
GGCACAAGAAGTGATGCTGCCACCAGCAACTCCCCAACCCCGCACGGGCC
TCCCCAAGAAACCCGATGTTTCTCGTCTCGGTTCTGCATGCCCCAAACAC
TACCACCCAACGTGATGACGAGCATACCCCTCCCCTTCCCTCATGATGCT
GTTTGTTCTGCGTAGATGAGGAAGCAGGAGGACCTAATAAAAGCCATGGA
CGCTGCCATCGAGGATGGCTATCTTAAGGCGCCTGAGGTTATTGCTCTGT
GCCAGGTGCAACCCGATCGTCAATTTCGTTTGCCTTGTCTTTGTGAAATG
GAGCTGCACTCCTGTATTACCAATGCCTGAACGTATTCGCGTTACCCTTG
CGACTGGTGCGCTCACGAAACCATTCCAGGTAAAACAACAAGTGAGTTGA
TTTGAAACTTTATTTGGAGCACACTGAGAAGAATATCTTCGTGAACGAAC
TTCCAAAATCCGAGAGGAGCTTAGATTGGTTATAAATAGCACCCCTCAGG
CAGCAAAGTAGGGATTAATGAGACTCCGAGTGACGTCGTGGCAACACATT
CGGTCTCGGAAGGGGCGGCGGGCGCAAACGCCGAGTGGCCTCGTGGCGAG
GGATCAAGGGTGGACTGTGGACGTGCAACCCAACCTTCGTTCGGCGGCAG
CATACCACTATCACCTCCGCCACCATCCTTATCTGTCACCAAAACCACAG
GACGGTCCCCCTATTTCCATTTGTCCAGCTATTCGTCCGTCCCCGCTCCC
CTGAACTTCGTTGCTTGTGATTGTTCTTGACGCGCCTTTGGATCCTGATG
ATCGACCGTTTCGTGTAACGAAACACATCAGGAAGGGGCTTCGATCGACA
GAGAGACGGAGAATGGCGGCACGGCACTCATCAAGGCCGCTGAGGAAGAC
CCTCACGCTCCGAACCACGCTTGGGTCAGGAACGAGGAGGGGTGGGAAGT
GTTGGCGGCCGCCCTGCTCTTGGATCGGCGAATTCAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1344:1410..3246+

>mRNA_E-fasciculatus_F_contig1344.2580.1 ID=mRNA_E-fasciculatus_F_contig1344.2580.1|Name=mRNA_E-fasciculatus_F_contig1344.2580.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=726bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1344:1410..3246+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAAAATCGCTTCGCGGTGACGGAGAGGGTCGCGGGAGCCGTGTGGAG
AGAGATCACGACCGTGGCGGCCATGGGGAGAGAAGAGAAGGGCAGGCGGA
GGGCTTTGCGCATTAAGATGGAAAATCGCTTCGCGGTGACGGAGAGGGTC
GCGGGAGCCGTGTGGAGAGAGATCACGACCGTGGCGGCCATGGGGAGAGA
AGAGAAGGGCAGGCGGAGGGCTTTGCGCATTAAGATGAGGAAGCAGGAGG
ACCTAATAAAAGCCATGGACGCTGCCATCGAGGATGGCTATCTTAAGGCG
CCTGAGGTTATTGCTCTGTGCCAGATGAGGAAGCAGGAGGACCTAATAAA
AGCCATGGACGCTGCCATCGAGGATGGCTATCTTAAGGCGCCTGAGGTTA
TTGCTCTGTGCCAGGAAGGGGCTTCGATCGACAGAGAGACGGAGAATGGC
GGCACGGCACTCATCAAGGCCGCTGAGGAAGACCCTCACGCTCCGAACCA
CGCTTGGGTCAGGAACGAGGAGGGGTGGGAAGTGTTGGCGGCCGCCCTGC
TCTTGGATCGGCGAATTCACGAAGGGGCTTCGATCGACAGAGAGACGGAG
AATGGCGGCACGGCACTCATCAAGGCCGCTGAGGAAGACCCTCACGCTCC
GAACCACGCTTGGGTCAGGAACGAGGAGGGGTGGGAAGTGTTGGCGGCCG
CCCTGCTCTTGGATCGGCGAATTCAC
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