mRNA_E-fasciculatus_F_contig13438.2579.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13438.2579.1
Unique NamemRNA_E-fasciculatus_F_contig13438.2579.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13438.2579.1 vs. uniprot
Match: D8LGY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY9_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 2.680e-35
Identity = 64/68 (94.12%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:    1 MSRFAKFATGLREFGNDINANISKALNVNISKVSEDPNSILLEEARAGRVDGLKACLDEFASRTDVNG 204
            MSRFAKFATGLREFGNDIN NISKALN  ISKVSEDPNSILLEEARAGRVDGLKACLD+FASRTDVNG
Sbjct:    1 MSRFAKFATGLREFGNDINVNISKALN--ISKVSEDPNSILLEEARAGRVDGLKACLDDFASRTDVNG 66
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BLAST of mRNA_E-fasciculatus_F_contig13438.2579.1 vs. uniprot
Match: A0A6H5KYH1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH1_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 6.050e-29
Identity = 61/68 (89.71%), Postives = 64/68 (94.12%), Query Frame = 1 
Query:    1 MSRFAKFATGLREFGNDINANISKALNVNISKVSEDPNSILLEEARAGRVDGLKACLDEFASRTDVNG 204
            MSRFAKFATGLREFGNDINANISKAL+  ISK SEDP+S+LLEEARAGRVDGLKACLD FASRTDVNG
Sbjct:    1 MSRFAKFATGLREFGNDINANISKALS--ISKESEDPSSVLLEEARAGRVDGLKACLDNFASRTDVNG 66
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13438.2579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGY9_ECTSI2.680e-3594.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYH1_9PHAE6.050e-2989.71Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13438contigE-fasciculatus_F_contig13438:132..3168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_001400.1
Exons2
Model size204
Cds size204
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927844.551515-CDS-E-fasciculatus_F_contig13438:131..2271622927844.551515-CDS-E-fasciculatus_F_contig13438:131..227Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13438 132..227 +
1695995719.726442-CDS-E-fasciculatus_F_contig13438:131..2271695995719.726442-CDS-E-fasciculatus_F_contig13438:131..227Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13438 132..227 +
1622927844.582069-CDS-E-fasciculatus_F_contig13438:3060..31681622927844.582069-CDS-E-fasciculatus_F_contig13438:3060..3168Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13438 3061..3168 +
1695995719.7393467-CDS-E-fasciculatus_F_contig13438:3060..31681695995719.7393467-CDS-E-fasciculatus_F_contig13438:3060..3168Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13438 3061..3168 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13438.2579.1prot_E-fasciculatus_F_contig13438.2579.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13438 132..3168 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13438.2579.1

>prot_E-fasciculatus_F_contig13438.2579.1 ID=prot_E-fasciculatus_F_contig13438.2579.1|Name=mRNA_E-fasciculatus_F_contig13438.2579.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=68bp
MSRFAKFATGLREFGNDINANISKALNVNISKVSEDPNSILLEEARAGRV
DGLKACLDEFASRTDVNG
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mRNA from alignment at E-fasciculatus_F_contig13438:132..3168+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13438.2579.1 ID=mRNA_E-fasciculatus_F_contig13438.2579.1|Name=mRNA_E-fasciculatus_F_contig13438.2579.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3037bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13438:132..3168+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCGCGCTTTGCTAAGTTTGCGACTGGCCTGCGAGAGTTCGGGAACGA
CATCAATGCCAACATCTCCAAGGCACTCAATGTCAACATCTCAAAGGTGA
TGATAATAATAAGAGACGAGAAAACGTCGGGGTGATTACATGTATGCATA
GTCTATTGATTTTTTTAATTTGAACACACGATGCGAGATTCTGTCATCAA
CAGCAAGTAGATGCTGCATGCATGTACAGCACGTATGGTATGTGTTTGTG
GTAGGTGTCTCCAGCGTCGGCATGAGATGCTGTGTTTCTCTCCTCTTCGA
CGTTTGGGAGGCGGTGGCGATCCCTTCTGGCCCCCCTCTTGTCAATCAAT
CGAGCGAAGGAAAATAATGGTTGTAGAACAGCCGCGGTGCCAAGCACGGC
TACTGCTTTTGAAGCTTTGAAGCACACGTCGTGGAGCACACCTATCTTCA
ACCTTGCTTCGGATCTACTGCTGTACTCAGACAAAGCTTCACCTGCTCAT
CGCAATGCGTCAGACCATACAGCAGAGCTGGACAGGTACCGTATTACGAG
GTTGGCGTGCTTTGTCGAGTTGATTTGTCTGCGAGGGTTGTTTCGTGTTT
GGACCACGGCTGGCTTTCACGAGCGTAATGTCGATTTTGATTTGAGCCGC
ACTCGTCCGCACCGCTGAACATGCGACTCCACCCTCTTCCCAATGAGATA
ATTTCGATCACGTCCCCACAACAGCAACGTCCGCACAGCAGTGTTTGCTA
CACGATACGGCCTTGCGGACGCCCCTGCATGCATTAGACAAGACCGAATC
TATGTACAGAAGGGGTGTTAGCTGTGGGGGTGGACGCGCGATGTCCCAGG
GAAAAATCGCCGGCGTCTCGTAAGCCTAAGGAAATTTCCGCACAGTCTTT
TGGTCTCACAATGCCGAGGCGGGAAGGGGGACACCCACCGCAGCAGGGCG
ACGCTCGATTGCTCCACGTCCGCGAGGGCACGAAAACCGAACGATCCATG
CGAGGAACAATTCTAGATGATAACTTTTCAACACTACCGATTTGGGCATT
ACGTAGCGCAGCCTACAGTAGTATAGTATACTTGCATATCATGCATATGA
GAGCCTGCTGTGTAGGGTGAGTGGGATGGATCGCATGCACGTACGTTGAC
GACAATTTAATCTTGGAGCAAGTTGTGGACTAACGGCCTTTTACCTCTCC
CGAAAAGCTCTGGCGGAGGAGCCCAACCTTTGCACTGCACAGGAGTCTAC
AATCCTAATATTCTGGAGAAATTTTGCGTTGTAAGTTGTTGTAAGTGAAA
TAACATGAACGATGTTCAGCAGTAGAGTACAAGTAGTATCGTGGTGTTGC
GGCGGGGTGACCAGACGTTGAGCAAAGCGCCCGAGCAGCCGCTCAACAAA
GAAATCAATCAACGCTAGTGGAGGGGATGAATTTTTTGTTGTGTCGGAAA
GGTTGGTCATGTAGTGCATACCGCACACTGCTGTACCGCATTAGAAATGG
CCCGTTCGTTCGGCAGAAATTTCTCTCGGGCTCTCACCGCAGCGCTGCAT
TCTCCGGGCTCATTTCTCCGGGCTCTTTTGGAGCGTTGACAGAATACAGA
TCTATATTCGCGTCACTTGAAGTTAGAGTACCCCCATGCCTCTCATGCCG
CTACATTCCTTTTTTTGTTTACCCCGCGCTCCTATACTGCAAGGGGCCTT
CCACTATACATTCGGTTGTTCAACGACGAGCAGTCATCGGGTGCGCGCGT
ACAGCAGTGGTTAGGCCCGTTCCCCTCCCATAAGGCGTTCATGGACCCGT
TGTTCTAATGCAGATCCTCTTTTCTTCACCCCTCCCAGTCAGATGCTGGT
TGCCGGTGTATCTAGTCTGCGTTGAGTACACAGCTTTTCGCGGGCTATTG
CGTGTCAGGGGCGTGGTCCACATACGTGTGACCTCTCCCGACTGCTGTGT
ACCCGCATGTTTCTGACACAGTGGGCATGTGTCTAAACCCAATCGAAAGT
CTCTCTCCCCACTGTGTCTCTCCACTGCTGTGCCCCCCGTTCCATCAGAC
CTGCAGTAGAGTAGACCTCCCTACACGTCATGTCTTGGAGCCGGGCCCGT
GACTCGGGGTCCCTTAATGTCATGATGCGCATAAACTGCATATATAGCTA
CCGCCCCCGTGATGTATGCATGCAGTATGCGTATATGTTAATATATGTTA
ATTAATTGTTTTTGTTTTGGGTTTGGGGTGTATTTATTTATTTTTTGGTT
TTGGAGAGTTTATTTTTTGGTTTTGGGGAGACAATATGCAACACTTGTTC
ACCTGTGCTGCAGTCGTGATCTTGGTATTTATGTATTTATTTAGTTTTTT
TTCGTGGCGATGGGTTGGCGCATGTGGATGCCTCGATGCATGAGTACAAT
TATTCGCTTCGTCTTTCTTTTATGGCACAGCGAGTCTTGTGTTAGGCTGT
CCCAAGGCTCGTCGGATGACACGAGTCGAGGGAATGCCGCAAGCGCTCTC
TCTTCCGCACAGAAACATGTATTTGCACTATAAGCCAGTCTTCCACGAAC
CACGATTGTTGAGTGTGCTACTGGCGCCGTGCATCATGCCGAACGCCGGG
TACAGTCCCCCAAACATGAGGCTTACGGCGTTGTTGTTCTTGCTGTCATC
TTGACTGTAGTAAACTAGCGTTTTGGCCTCTGTTTCGTGCCACCTTTAGG
CACATACATGTATTCGCGAGAAGGCCGATCGCAAAGTGTGAAAGAGGCCC
GACGGCGCATCAACGCGTTTTTTTGGGATAGGATAGGCGGAGAAGAGAAG
AGAGCCTTCGAAACTACTGCACTGCACTGCTGTCGACGACACATTTCTTA
ATCTTATCGGCGTTCTCCACCGACAGCAGTTGTACCGTATGGCCGTCCCC
GCGTGCCCCTCGTGATGCGCTCGGAGCAGGTGTCGGAGGACCCAAACAGC
ATCCTACTGGAAGAAGCGAGGGCCGGCAGAGTGGACGGCCTCAAGGCATG
CTTGGACGAGTTCGCGTCTAGGACGGACGTCAACGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13438:132..3168+

>mRNA_E-fasciculatus_F_contig13438.2579.1 ID=mRNA_E-fasciculatus_F_contig13438.2579.1|Name=mRNA_E-fasciculatus_F_contig13438.2579.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=408bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13438:132..3168+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCGCGCTTTGCTAAGTTTGCGACTGGCCTGCGAGAGTTCGGGAACGA
CATCAATGCCAACATCTCCAAGGCACTCAATGTCAACATCTCAAAGATGT
CGCGCTTTGCTAAGTTTGCGACTGGCCTGCGAGAGTTCGGGAACGACATC
AATGCCAACATCTCCAAGGCACTCAATGTCAACATCTCAAAGGTGTCGGA
GGACCCAAACAGCATCCTACTGGAAGAAGCGAGGGCCGGCAGAGTGGACG
GCCTCAAGGCATGCTTGGACGAGTTCGCGTCTAGGACGGACGTCAACGGC
GTGTCGGAGGACCCAAACAGCATCCTACTGGAAGAAGCGAGGGCCGGCAG
AGTGGACGGCCTCAAGGCATGCTTGGACGAGTTCGCGTCTAGGACGGACG
TCAACGGC
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