mRNA_E-fasciculatus_F_contig13407.2555.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13407.2555.1
Unique NamemRNA_E-fasciculatus_F_contig13407.2555.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13407.2555.1 vs. uniprot
Match: A0A6H5K2V5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2V5_9PHAE)

HSP 1 Score: 506 bits (1304), Expect = 2.830e-171
Identity = 359/459 (78.21%), Postives = 367/459 (79.96%), Query Frame = 1 
Query:   10 ASLSASASSGSLAPPPGLPRSSSTAELVALGFDPSGGMEGGNDLNSSDXXXXXXXXXXXXXXXXXXXXXXXXX--GLDGGDXXXXXXXXXXXXTGTGSAG-----GMGLGLRNHSLTNLANMVRSQSVSSFHSEMFASGGQPVRSAAIESPAWGSYPANLDKMDSGXXXXXXR--EDVFTVSPS--MGPRGAGRGTLPMRPPAGGVGGDRGVGGGDVGGAAGADLSPQQFAGRGTAARREVVDRGMSAGAAGSARTSQRRPMG-----GGGSSFDLPRGGVPAGPGRSGSGAPPSGRAMVHNRSDTDLVASFSRLGFGQSGVSRWSPLMSPTASPLVGAPLLEEDPLDLELEENASXXXXXXXXXXGAAADTFGAPSSFLTSHGRRGLMDGHGASGEAPGMEVRLPRHASYPSLTGSRGGXXXXXXXXXXXXXXXXYGMEDLVHGALEHLTAGDSATGG 1338
            ASLSASASSGSLAPPPGLPRSSSTAELVALGFDPSGGMEGGNDLNSSD  XXXXXXXXXXXXXXXXXXXXXX   G D GD             GTG        GMGLGLRNHSLTNLANMVRSQSVSSFHSE+FASGG+PV SAA+ESPAWGSYPANLDKM SGXXXXXX   ED+FT+SPS  +GPRGAGRG LPMRPP GG  GD  V GG  G  AGADLSPQQFAGRGTAARREVVDRGMSA                    GGGSSFD PRG VP+GPGRS  GA P GRAMVHNRSDTDLVASFSR GFGQ GVSRWSPLMSPTASPLVGAPLLEEDPLDLELEENAS          GAAADTFG PSSFLTSHGRRGLMDG GA+GEAP MEVRLPRHASYPSLT SRGG  XXXXXXXXXXXX  YGMEDLVHGALEHLTAGDSATGG
Sbjct:    6 ASLSASASSGSLAPPPGLPRSSSTAELVALGFDPSGGMEGGNDLNSSDGGXXXXXXXXXXXXXXXXXXXXXXVXGGHDAGDIGGKND-------GTGGTXXXXXXGMGLGLRNHSLTNLANMVRSQSVSSFHSEIFASGGKPVGSAAVESPAWGSYPANLDKMGSGXXXXXXXXXEDIFTLSPSPSVGPRGAGRGALPMRPPTGG--GDSDVVGG-TGAGAGADLSPQQFAGRGTAARREVVDRGMSAXXXXXXXXXXXXXXXXXXXMGGGSSFD-PRGIVPSGPGRS--GALPGGRAMVHNRSDTDLVASFSRFGFGQGGVSRWSPLMSPTASPLVGAPLLEEDPLDLELEENASRGAGASGGAGGAAADTFGPPSSFLTSHGRRGLMDGQGAAGEAPSMEVRLPRHASYPSLTVSRGGGSXXXXXXXXXXXXG-YGMEDLVHGALEHLTAGDSATGG 450
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BLAST of mRNA_E-fasciculatus_F_contig13407.2555.1 vs. uniprot
Match: D8LNL2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNL2_ECTSI)

HSP 1 Score: 475 bits (1222), Expect = 6.670e-163
Identity = 337/417 (80.82%), Postives = 343/417 (82.25%), Query Frame = 1 
Query:    1 MQAASLSASASSGSLAPPPGLPRSSSTAELVALGFDPSGGMEGGNDLNSSDXXXXXXXXXXXXXXXXXXXXXXXXX-------GLDGGDXXXXXXXXXXXXTGTGSAGGMGLGLRNHSLTNLANMVRSQSVSSFHSEMFASGGQPVRSAAIESPAWGSYPANLDKMDSGXXXXXXR---EDVFTVSPSMGPRGAGRGTLPMRPPAGGVGGDRGVGGGDVGGAA----------------GADLSPQQFAGRGTAARREVVDRGMSAG-AAGSARTSQRRPMGGGGSSFDLPRGGVPAGPGRSGSGAPPSGRAMVHNRSDTDLVASFSRLGFGQSGVSRWSPLMSPTASPLVGAPLLEEDPLDLELEENASXXXXXXXXXXGAAADTFGAPSSFLTSHGRRGLMDGHGASGEAPGMEV 1170
            MQAASLSASASSGSLAPPPGLPRSSSTAELVALGFDPSG M+GGNDLNSSD  XXXXXXXXXXXXXXXXXXXXXXX       GLD GD        XXXX        MGLGLRNHSLTNLANMVRSQSVSSFHSE+FASGG+PVRS AI+SPAWGSYPANLDKM SGXXXXXX    ED+FTVSPSMGPRGAGRGTLPMRPP          GGGD GG                  GADLSPQQFAGRGTAARREVVDRGMSAG AAGS RTSQRRPMGGG SSFD PRG VP+GPGRS  GAPPSGRAMVHNRSDTDLVASFSRLGFGQ GVSRWSPLMSPTASPLVGAPLLEEDPLDLELEENAS XXXXXXX  GAA DTFGAPSSFLTSHGRRGLMDGHGASGEAPGMEV
Sbjct:    1 MQAASLSASASSGSLAPPPGLPRSSSTAELVALGFDPSGVMDGGNDLNSSDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGGLDAGDMGGKDDGTXXXXXXXXXX--MGLGLRNHSLTNLANMVRSQSVSSFHSEIFASGGKPVRSTAIDSPAWGSYPANLDKMGSGXXXXXXXXXXEDMFTVSPSMGPRGAGRGTLPMRPP---------TGGGDRGGVXXXXXXXXXDVXXXXXXGADLSPQQFAGRGTAARREVVDRGMSAGSAAGSTRTSQRRPMGGG-SSFD-PRGMVPSGPGRS--GAPPSGRAMVHNRSDTDLVASFSRLGFGQGGVSRWSPLMSPTASPLVGAPLLEEDPLDLELEENASRXXXXXXX--GAAVDTFGAPSSFLTSHGRRGLMDGHGASGEAPGMEV 400
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13407.2555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2V5_9PHAE2.830e-17178.21Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LNL2_ECTSI6.670e-16380.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13407contigE-fasciculatus_F_contig13407:1620..2957 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_006710.1
Exons1
Model size1338
Cds size1338
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927842.1248918-CDS-E-fasciculatus_F_contig13407:1619..29571622927842.1248918-CDS-E-fasciculatus_F_contig13407:1619..2957Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13407 1620..2957 -
1695995718.548745-CDS-E-fasciculatus_F_contig13407:1619..29571695995718.548745-CDS-E-fasciculatus_F_contig13407:1619..2957Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13407 1620..2957 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13407.2555.1prot_E-fasciculatus_F_contig13407.2555.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13407 1620..2957 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13407.2555.1

>prot_E-fasciculatus_F_contig13407.2555.1 ID=prot_E-fasciculatus_F_contig13407.2555.1|Name=mRNA_E-fasciculatus_F_contig13407.2555.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=446bp
MQAASLSASASSGSLAPPPGLPRSSSTAELVALGFDPSGGMEGGNDLNSS
DGGGGGSGYDPRPPAMGGSGGGGGGGGLDGGDMGGKDDGGDMGGTGTGSA
GGMGLGLRNHSLTNLANMVRSQSVSSFHSEMFASGGQPVRSAAIESPAWG
SYPANLDKMDSGGGGGGGREDVFTVSPSMGPRGAGRGTLPMRPPAGGVGG
DRGVGGGDVGGAAGADLSPQQFAGRGTAARREVVDRGMSAGAAGSARTSQ
RRPMGGGGSSFDLPRGGVPAGPGRSGSGAPPSGRAMVHNRSDTDLVASFS
RLGFGQSGVSRWSPLMSPTASPLVGAPLLEEDPLDLELEENASRGAGTGA
GAGGAAADTFGAPSSFLTSHGRRGLMDGHGASGEAPGMEVRLPRHASYPS
LTGSRGGSGGGGGGGGGGGGGGGYGMEDLVHGALEHLTAGDSATGG
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mRNA from alignment at E-fasciculatus_F_contig13407:1620..2957-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13407.2555.1 ID=mRNA_E-fasciculatus_F_contig13407.2555.1|Name=mRNA_E-fasciculatus_F_contig13407.2555.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1338bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13407:1620..2957- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAAGCAGCATCTCTGTCGGCGAGCGCCAGCAGCGGGTCGTTAGCACC
CCCGCCGGGACTGCCGCGTAGCAGCTCCACGGCCGAGCTGGTCGCGCTCG
GCTTCGACCCGTCCGGGGGAATGGAGGGCGGCAACGACCTCAACAGCAGT
GACGGCGGGGGCGGGGGATCAGGGTATGACCCCCGCCCACCAGCCATGGG
CGGGAGCGGCGGCGGCGGCGGAGGAGGCGGCCTTGACGGCGGAGATATGG
GTGGAAAAGACGACGGCGGAGATATGGGTGGTACCGGGACGGGGTCGGCG
GGGGGGATGGGACTTGGCCTGAGGAACCACTCTCTCACAAACCTAGCCAA
CATGGTGCGATCGCAGTCGGTGTCCTCTTTCCACTCAGAAATGTTCGCTT
CGGGCGGCCAGCCAGTGAGGTCAGCCGCAATCGAGTCCCCGGCGTGGGGA
TCATACCCGGCCAACCTCGACAAAATGGACAGCGGGGGCGGCGGCGGCGG
CGGCCGGGAGGACGTGTTCACGGTCTCCCCGTCCATGGGCCCACGAGGCG
CAGGCCGTGGCACGCTGCCGATGCGCCCTCCTGCGGGCGGAGTTGGCGGG
GATAGAGGAGTTGGCGGGGGTGATGTTGGCGGCGCGGCCGGTGCCGACCT
GTCCCCCCAGCAGTTCGCGGGAAGGGGCACCGCGGCTAGGAGAGAGGTGG
TGGACCGAGGAATGTCGGCGGGGGCGGCCGGCTCCGCCAGGACGTCCCAG
CGGCGACCGATGGGAGGAGGAGGGAGTTCCTTCGATCTTCCAAGGGGCGG
CGTTCCTGCCGGTCCAGGCAGGAGCGGGAGCGGAGCCCCTCCGAGCGGTC
GAGCCATGGTGCACAACCGGTCGGACACCGACCTCGTGGCTTCGTTTTCG
CGGCTTGGGTTCGGCCAGAGCGGGGTTTCTCGCTGGAGTCCTCTCATGTC
TCCCACCGCCAGCCCGCTAGTGGGCGCACCGCTGCTCGAAGAAGACCCCC
TGGACCTTGAACTCGAGGAGAACGCGTCCCGCGGTGCTGGTACTGGTGCT
GGTGCTGGAGGCGCTGCGGCTGACACGTTCGGCGCACCGTCCTCTTTCCT
GACGTCTCACGGAAGGAGGGGTCTCATGGACGGCCATGGTGCTTCAGGCG
AAGCCCCGGGGATGGAGGTGAGGTTGCCACGCCATGCCTCCTATCCATCT
CTCACGGGATCGCGTGGAGGTAGCGGCGGCGGCGGCGGCGGTGGCGGCGG
TGGCGGCGGTGGCGGCGGATATGGCATGGAAGACTTGGTACACGGAGCCT
TGGAGCACCTCACGGCCGGGGACAGCGCTACGGGGGGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13407:1620..2957-

>mRNA_E-fasciculatus_F_contig13407.2555.1 ID=mRNA_E-fasciculatus_F_contig13407.2555.1|Name=mRNA_E-fasciculatus_F_contig13407.2555.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2676bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13407:1620..2957- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAAGCAGCATCTCTGTCGGCGAGCGCCAGCAGCGGGTCGTTAGCACC
CCCGCCGGGACTGCCGCGTAGCAGCTCCACGGCCGAGCTGGTCGCGCTCG
GCTTCGACCCGTCCGGGGGAATGGAGGGCGGCAACGACCTCAACAGCAGT
GACGGCGGGGGCGGGGGATCAGGGTATGACCCCCGCCCACCAGCCATGGG
CGGGAGCGGCGGCGGCGGCGGAGGAGGCGGCCTTGACGGCGGAGATATGG
GTGGAAAAGACGACGGCGGAGATATGGGTGGTACCGGGACGGGGTCGGCG
GGGGGGATGGGACTTGGCCTGAGGAACCACTCTCTCACAAACCTAGCCAA
CATGGTGCGATCGCAGTCGGTGTCCTCTTTCCACTCAGAAATGTTCGCTT
CGGGCGGCCAGCCAGTGAGGTCAGCCGCAATCGAGTCCCCGGCGTGGGGA
TCATACCCGGCCAACCTCGACAAAATGGACAGCGGGGGCGGCGGCGGCGG
CGGCCGGGAGGACGTGTTCACGGTCTCCCCGTCCATGGGCCCACGAGGCG
CAGGCCGTGGCACGCTGCCGATGCGCCCTCCTGCGGGCGGAGTTGGCGGG
GATAGAGGAGTTGGCGGGGGTGATGTTGGCGGCGCGGCCGGTGCCGACCT
GTCCCCCCAGCAGTTCGCGGGAAGGGGCACCGCGGCTAGGAGAGAGGTGG
TGGACCGAGGAATGTCGGCGGGGGCGGCCGGCTCCGCCAGGACGTCCCAG
CGGCGACCGATGGGAGGAGGAGGGAGTTCCTTCGATCTTCCAAGGGGCGG
CGTTCCTGCCGGTCCAGGCAGGAGCGGGAGCGGAGCCCCTCCGAGCGGTC
GAGCCATGGTGCACAACCGGTCGGACACCGACCTCGTGGCTTCGTTTTCG
CGGCTTGGGTTCGGCCAGAGCGGGGTTTCTCGCTGGAGTCCTCTCATGTC
TCCCACCGCCAGCCCGCTAGTGGGCGCACCGCTGCTCGAAGAAGACCCCC
TGGACCTTGAACTCGAGGAGAACGCGTCCCGCGGTGCTGGTACTGGTGCT
GGTGCTGGAGGCGCTGCGGCTGACACGTTCGGCGCACCGTCCTCTTTCCT
GACGTCTCACGGAAGGAGGGGTCTCATGGACGGCCATGGTGCTTCAGGCG
AAGCCCCGGGGATGGAGGTGAGGTTGCCACGCCATGCCTCCTATCCATCT
CTCACGGGATCGCGTGGAGGTAGCGGCGGCGGCGGCGGCGGTGGCGGCGG
TGGCGGCGGTGGCGGCGGATATGGCATGGAAGACTTGGTACACGGAGCCT
TGGAGCACCTCACGGCCGGGGACAGCGCTACGGGGGGTATGCAAGCAGCA
TCTCTGTCGGCGAGCGCCAGCAGCGGGTCGTTAGCACCCCCGCCGGGACT
GCCGCGTAGCAGCTCCACGGCCGAGCTGGTCGCGCTCGGCTTCGACCCGT
CCGGGGGAATGGAGGGCGGCAACGACCTCAACAGCAGTGACGGCGGGGGC
GGGGGATCAGGGTATGACCCCCGCCCACCAGCCATGGGCGGGAGCGGCGG
CGGCGGCGGAGGAGGCGGCCTTGACGGCGGAGATATGGGTGGAAAAGACG
ACGGCGGAGATATGGGTGGTACCGGGACGGGGTCGGCGGGGGGGATGGGA
CTTGGCCTGAGGAACCACTCTCTCACAAACCTAGCCAACATGGTGCGATC
GCAGTCGGTGTCCTCTTTCCACTCAGAAATGTTCGCTTCGGGCGGCCAGC
CAGTGAGGTCAGCCGCAATCGAGTCCCCGGCGTGGGGATCATACCCGGCC
AACCTCGACAAAATGGACAGCGGGGGCGGCGGCGGCGGCGGCCGGGAGGA
CGTGTTCACGGTCTCCCCGTCCATGGGCCCACGAGGCGCAGGCCGTGGCA
CGCTGCCGATGCGCCCTCCTGCGGGCGGAGTTGGCGGGGATAGAGGAGTT
GGCGGGGGTGATGTTGGCGGCGCGGCCGGTGCCGACCTGTCCCCCCAGCA
GTTCGCGGGAAGGGGCACCGCGGCTAGGAGAGAGGTGGTGGACCGAGGAA
TGTCGGCGGGGGCGGCCGGCTCCGCCAGGACGTCCCAGCGGCGACCGATG
GGAGGAGGAGGGAGTTCCTTCGATCTTCCAAGGGGCGGCGTTCCTGCCGG
TCCAGGCAGGAGCGGGAGCGGAGCCCCTCCGAGCGGTCGAGCCATGGTGC
ACAACCGGTCGGACACCGACCTCGTGGCTTCGTTTTCGCGGCTTGGGTTC
GGCCAGAGCGGGGTTTCTCGCTGGAGTCCTCTCATGTCTCCCACCGCCAG
CCCGCTAGTGGGCGCACCGCTGCTCGAAGAAGACCCCCTGGACCTTGAAC
TCGAGGAGAACGCGTCCCGCGGTGCTGGTACTGGTGCTGGTGCTGGAGGC
GCTGCGGCTGACACGTTCGGCGCACCGTCCTCTTTCCTGACGTCTCACGG
AAGGAGGGGTCTCATGGACGGCCATGGTGCTTCAGGCGAAGCCCCGGGGA
TGGAGGTGAGGTTGCCACGCCATGCCTCCTATCCATCTCTCACGGGATCG
CGTGGAGGTAGCGGCGGCGGCGGCGGCGGTGGCGGCGGTGGCGGCGGTGG
CGGCGGATATGGCATGGAAGACTTGGTACACGGAGCCTTGGAGCACCTCA
CGGCCGGGGACAGCGCTACGGGGGGT
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