mRNA_E-fasciculatus_F_contig13406.2554.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13406.2554.1
Unique NamemRNA_E-fasciculatus_F_contig13406.2554.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13406.2554.1 vs. uniprot
Match: D7FI53_ECTSI (SMK-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI53_ECTSI)

HSP 1 Score: 266 bits (681), Expect = 5.230e-84
Identity = 133/137 (97.08%), Postives = 135/137 (98.54%), Query Frame = 1
Query:    4 KVLLADNLFVDMAGVFEYDLELKEKGDHRKFLTQTASFKQVLPIPDEEVVQKIHQNFRITFLKDALLRPMMDDAVVGTLNSLTYFNNTEIVQSLQHTDYVRDVFLLLNEPETGSGGKKRRDILMFLRELFNMAKTLQ 414
            +VLLADNLFVDMAGVFEYDLELKEKGDHRKFLTQTASFKQVLPIPDEEVVQKIHQNFRITFLKDALLRPMMDDAVVGTLNSLTYFNNTEIVQSLQHTDYVRDVFLLLNEPE G GG+KRRDILMFLRELFNMAKTLQ
Sbjct:  192 EVLLADNLFVDMAGVFEYDLELKEKGDHRKFLTQTASFKQVLPIPDEEVVQKIHQNFRITFLKDALLRPMMDDAVVGTLNSLTYFNNTEIVQSLQHTDYVRDVFLLLNEPENGRGGQKRRDILMFLRELFNMAKTLQ 328          
BLAST of mRNA_E-fasciculatus_F_contig13406.2554.1 vs. uniprot
Match: A0A6H5KKJ6_9PHAE (SMK-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ6_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 1.650e-50
Identity = 90/92 (97.83%), Postives = 92/92 (100.00%), Query Frame = 1
Query:    4 KVLLADNLFVDMAGVFEYDLELKEKGDHRKFLTQTASFKQVLPIPDEEVVQKIHQNFRITFLKDALLRPMMDDAVVGTLNSLTYFNNTEIVQ 279
            +VLLADNLFVDMAGVFEYDLELKEKG+HRKFLTQTASFKQVLPIPDEEVVQKIHQNFRITFLKDALLRPMMDDAVVGTLNSLTYFNNTEIVQ
Sbjct:  302 EVLLADNLFVDMAGVFEYDLELKEKGNHRKFLTQTASFKQVLPIPDEEVVQKIHQNFRITFLKDALLRPMMDDAVVGTLNSLTYFNNTEIVQ 393          
BLAST of mRNA_E-fasciculatus_F_contig13406.2554.1 vs. uniprot
Match: A0A7S3YI92_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YI92_HETAK)

HSP 1 Score: 149 bits (377), Expect = 8.970e-41
Identity = 78/138 (56.52%), Postives = 100/138 (72.46%), Query Frame = 1
Query:    4 KVLLADNLFVDMAGVFEYDLELKEKGDHRKFLTQTASFKQVLPIPDEEVVQKIHQNFRITFLKDALLRPMMDDAVVGTLNSLTYFNNTEIVQSL-QHTDYVRDVFLLLNEPETGSGGKKRRDILMFLRELFNMAKTLQ 414
            +V+L+D  FV +AGVFEYD ELK KGDHR FL +   FKQVLPI D E+  KI QNFRI+FL+D LLRPMMDDA   TL+SL +FNN+EI+Q+L Q +DY++ ++ L      G+  + R DIL F RE+  M+KTLQ
Sbjct:  199 EVILSDQFFVRVAGVFEYDPELKHKGDHRTFLQEKVQFKQVLPIEDPELGAKIRQNFRISFLRDVLLRPMMDDAYASTLSSLAFFNNSEILQALHQDSDYLKRLYALFLAK--GTSRQTRADILAFTREMVGMSKTLQ 334          
BLAST of mRNA_E-fasciculatus_F_contig13406.2554.1 vs. uniprot
Match: A0A836CNC7_9STRA (Component of IIS longevity pathway SMK-1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNC7_9STRA)

HSP 1 Score: 135 bits (341), Expect = 8.280e-39
Identity = 69/109 (63.30%), Postives = 84/109 (77.06%), Query Frame = 1
Query:    7 VLLADNLFVDMAGVFEYDLELKEKGDHRKFLTQTASFKQVLPIPDEEVVQKIHQNFRITFLKDALLRPMMDDAVVGTLNSLTYFNNTEIVQSL-QHTDYVRDVFLLLNE 330
            +LL+D  F  MAGVFEYD EL+ + +HR FL ++A+FKQ+LPI D E+V +IHQNFRI FLKD LLRPMMDDAV  TL S+ YFNN  IV +L + +DYVR VFLLL E
Sbjct:    1 MLLSDRFFNRMAGVFEYDPELRCRAEHRAFLDRSATFKQILPIEDAEIVARIHQNFRIAFLKDTLLRPMMDDAVAATLTSVAYFNNGAIVGALHKDSDYVRRVFLLLEE 109          
BLAST of mRNA_E-fasciculatus_F_contig13406.2554.1 vs. uniprot
Match: D3BTE8_POLPP (EVH1 domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BTE8_POLPP)

HSP 1 Score: 115 bits (287), Expect = 3.060e-27
Identity = 59/141 (41.84%), Postives = 92/141 (65.25%), Query Frame = 1
Query:    1 FKVLLADNLFVDMAGVFEYDLELKEKGD--HRKFLTQTASFKQVLPIPDEEVVQKIHQNFRITFLKDALLRPMMDDAVVGTLNSLTYFNNTEIVQSLQH-TDYVRDVFLLLNEPETGSGGKKRRDILMFLRELFNMAKTLQ 414
            F++LL++   + M GV EYD E+ E+    HR+FL+Q   FK+V+    E ++  IHQ FR+ +LKD +L  ++DD    TLNS+ YFNN+EIV  +Q  T +++ +F  + +  +GS   +RRD+L+FL+EL  +AK LQ
Sbjct:  207 FELLLSEEYLLRMMGVLEYDPEISEQNRIRHREFLSQQVIFKEVVKFSSESLISTIHQTFRVQYLKDVVLPRVLDDLTFSTLNSIIYFNNSEIVGQIQKDTTFLQKIFTQIQQSPSGSS--ERRDLLLFLQELCGLAKNLQ 345          
BLAST of mRNA_E-fasciculatus_F_contig13406.2554.1 vs. uniprot
Match: A0A1Y2FIW1_PROLT (Component of IIS longevity pathway SMK-1-domain-containing protein n=1 Tax=Protomyces lactucae-debilis TaxID=2754530 RepID=A0A1Y2FIW1_PROLT)

HSP 1 Score: 115 bits (287), Expect = 4.800e-27
Identity = 53/140 (37.86%), Postives = 94/140 (67.14%), Query Frame = 1
Query:    1 FKVLLADNLFVDMAGVFEYDLEL-KEKGDHRKFLTQTASFKQVLPIPDEEVVQKIHQNFRITFLKDALLRPMMDDAVVGTLNSLTYFNNTEIVQSLQHTD-YVRDVFLLLNEPETGSGGKKRRDILMFLRELFNMAKTLQ 414
            F+ +L D +F+ +AG+ EYD +    K +HRK+L+ T+ FK+V+P+ D E+ +KIHQ FR+ ++KD +L  ++DD     LN+L +FN  +IVQ  QH + ++  +F L ++P++    + R D ++F+++  ++AKTLQ
Sbjct:  297 FESILRDEVFLQIAGILEYDPDFPNHKAEHRKYLSDTSKFKEVVPVNDPEIKRKIHQTFRLQYIKDVILARILDDPTFSILNTLIFFNQVDIVQHFQHNEEFLAALFGLFDDPKSDQAAR-RDDAVLFIQQFCSIAKTLQ 435          
BLAST of mRNA_E-fasciculatus_F_contig13406.2554.1 vs. uniprot
Match: A0A7S1XRH0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XRH0_9STRA)

HSP 1 Score: 107 bits (268), Expect = 2.480e-26
Identity = 51/137 (37.23%), Postives = 92/137 (67.15%), Query Frame = 1
Query:    4 KVLLADNLFVDMAGVFEYDLELKEKGDHRKFLTQTASFKQVLPIPDEEVVQKIHQNFRITFLKDALLRPMMDDAVVGTLNSLTYFNNTEIVQSL-QHTDYVRDVFLLLNEPETGSGGKKRRDILMFLRELFNMAKTL 411
            ++LL D++F  +A VFEYD +LK K ++R+FL + A  K+V+P+ D+E+  KI Q FR  FLK++++RP++D++ VG +N++   N++EI +   ++   +R+V ++L  P  G    + RD L  L EL +++K++
Sbjct:   23 EMLLTDDVFPRVAAVFEYDGKLKRKAEYRRFLREQARLKEVVPLNDQELKDKITQTFRAKFLKESMIRPLIDESGVGAVNAVIGVNSSEIAERFRENKSLLREVVVILRPPVRGDNSPRVRDALRLLLELLHLSKSM 159          
BLAST of mRNA_E-fasciculatus_F_contig13406.2554.1 vs. uniprot
Match: A0A0L0HL80_SPIPD (SMK-1 domain-containing protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HL80_SPIPD)

HSP 1 Score: 112 bits (281), Expect = 3.090e-26
Identity = 58/141 (41.13%), Postives = 90/141 (63.83%), Query Frame = 1
Query:    1 FKVLLADNLFVDMAGVFEYDLELKE-KGDHRKFLTQTASFKQVLPIPDEEVVQKIHQNFRITFLKDALLRPMMDDAVVGTLNSLTYFNNTEIVQSL-QHTDYVRDVFLLLNEPETGSGGKKRRDILMFLRELFNMAKTLQA 417
            F+++L+D LF  + G+ EYD E    K +HR+   + A FKQ++PI + E+  KI+Q +R+ +LKD  L  ++DD     L S+T+FN TEI+Q + Q   +++DVF LL  PET    +K+ D +MFL EL ++ K LQ+
Sbjct:  267 FELILSDELFTSVLGILEYDREFPNMKAEHREHFAKHAQFKQIVPIRNSEIRAKINQTYRVQYLKDVALARLLDDGTFSALLSMTFFNQTEIIQYIRQDPTFLKDVFGLLMAPETPQ--EKKGDAIMFLHELCSITKNLQS 405          
BLAST of mRNA_E-fasciculatus_F_contig13406.2554.1 vs. uniprot
Match: SMEK_DICDI (Suppressor of Mek1 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=SMEK_DICDI)

HSP 1 Score: 111 bits (277), Expect = 1.080e-25
Identity = 56/140 (40.00%), Postives = 92/140 (65.71%), Query Frame = 1
Query:    4 KVLLADNLFVDMAGVFEYDLELKEKG--DHRKFLTQTASFKQVLPIPDEEVVQKIHQNFRITFLKDALLRPMMDDAVVGTLNSLTYFNNTEIVQSLQH-TDYVRDVFLLLNEPETGSGGKKRRDILMFLRELFNMAKTLQ 414
            +V+L+++  V + G  EYD E+ E     HR+FL Q   FKQV+  P + ++  IHQ FRI +LKD +L  ++DD    +LNSL YFNN +IV  +Q+ +D++ ++F  + + E  S  ++R+D+++FL++L N+AK LQ
Sbjct:  193 EVILSEDYLVRVMGALEYDPEISENNRIKHREFLNQQVVFKQVIKFPSKSLIGTIHQTFRIQYLKDVVLPRVLDDVTFSSLNSLIYFNNIDIVSQIQNDSDFLENLFSEIQKSEKNS--EERKDLILFLQDLCNLAKGLQ 330          
BLAST of mRNA_E-fasciculatus_F_contig13406.2554.1 vs. uniprot
Match: UPI001E2781A1 (serine/threonine-protein phosphatase 4 regulatory subunit 3 isoform X1 n=3 Tax=Coccinellini TaxID=263631 RepID=UPI001E2781A1)

HSP 1 Score: 109 bits (272), Expect = 4.940e-25
Identity = 54/141 (38.30%), Postives = 90/141 (63.83%), Query Frame = 1
Query:    1 FKVLLADNLFVDMAGVFEYDLELKEKGDHRKFLTQTASFKQVLPIPDEEVVQKIHQNFRITFLKDALLRP--MMDDAVVGTLNSLTYFNNTEIVQSLQHTD-YVRDVFLLLNEPETGSGGKKRRDILMFLRELFNMAKTLQ 414
            F+V+ +D L  D+ G  EYD     +  HR++L Q A F++ +PI + E++ KIHQ FR+ +++D +L    + +D ++ TLNS  +FN  EIV  +Q  D ++ ++F +L++  T +   KRRD+++FLREL N A+ LQ
Sbjct:  210 FEVMFSDELIFDVVGCLEYDASCPNRKKHREYLRQQAKFREAIPIKNPELLSKIHQTFRVQYIQDVVLPAPSVFEDNMLSTLNSFIFFNKVEIVSLVQEDDKFLSELFSMLSD--TSTSVLKRRDLMLFLRELVNYAQNLQ 348          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13406.2554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI53_ECTSI5.230e-8497.08SMK-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KKJ6_9PHAE1.650e-5097.83SMK-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S3YI92_HETAK8.970e-4156.52Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A836CNC7_9STRA8.280e-3963.30Component of IIS longevity pathway SMK-1-domain-co... [more]
D3BTE8_POLPP3.060e-2741.84EVH1 domain-containing protein n=1 Tax=Polysphondy... [more]
A0A1Y2FIW1_PROLT4.800e-2737.86Component of IIS longevity pathway SMK-1-domain-co... [more]
A0A7S1XRH0_9STRA2.480e-2637.23Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A0L0HL80_SPIPD3.090e-2641.13SMK-1 domain-containing protein n=2 Tax=Spizellomy... [more]
SMEK_DICDI1.080e-2540.00Suppressor of Mek1 n=1 Tax=Dictyostelium discoideu... [more]
UPI001E2781A14.940e-2538.30serine/threonine-protein phosphatase 4 regulatory ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13406contigE-fasciculatus_F_contig13406:2030..3381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score270.0
Seed ortholog evalue6.1e-70
Seed eggNOG ortholog2880.D7FI53
Preferred nameSMEK2
KEGG koko:K17491
KEGG Pathwayko04212,ko04922,map04212,map04922
GOsGO:0000003,GO:0000075,GO:0000228,GO:0000775,GO:0000785,GO:0000790,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005938,GO:0006109,GO:0006111,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006464,GO:0006470,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006935,GO:0006950,GO:0006952,GO:0006974,GO:0007049,GO:0007063,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0007399,GO:0007405,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0008287,GO:0008356,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010165,GO:0010212,GO:0010564,GO:0010604,GO:0010639,GO:0010646,GO:0010648,GO:0010675,GO:0010676,GO:0010906,GO:0010907,GO:0010921,GO:0010948,GO:0015630,GO:0016311,GO:0016604,GO:0016607,GO:0017145,GO:0019208,GO:0019211,GO:0019216,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019888,GO:0022008,GO:0022402,GO:0022414,GO:0023051,GO:0023052,GO:0023057,GO:0030154,GO:0030234,GO:0030289,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031974,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033313,GO:0033554,GO:0034641,GO:0035303,GO:0035304,GO:0035556,GO:0036211,GO:0036445,GO:0040011,GO:0040020,GO:0042221,GO:0042330,GO:0042742,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043255,GO:0043327,GO:0043412,GO:0043666,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045165,GO:0045175,GO:0045722,GO:0045739,GO:0045786,GO:0045787,GO:0045835,GO:0045875,GO:0045913,GO:0045930,GO:0045931,GO:0045935,GO:0046483,GO:0048103,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051246,GO:0051301,GO:0051321,GO:0051336,GO:0051445,GO:0051447,GO:0051598,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0055057,GO:0055059,GO:0060255,GO:0061351,GO:0062012,GO:0062013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071944,GO:0072089,GO:0072395,GO:0072411,GO:0072462,GO:0072542,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0098542,GO:0098687,GO:0098722,GO:0098772,GO:0099568,GO:1901360,GO:1901564,GO:1901976,GO:1901977,GO:1902494,GO:1902659,GO:1902660,GO:1903046,GO:1903293,GO:1904289,GO:1904290,GO:2000001,GO:2000002,GO:2000241,GO:2000242,GO:2000779,GO:2000781,GO:2001020,GO:2001021,GO:2001022,GO:2001032,GO:2001034,GO:2001251
EggNOG free text desc.signal transduction involved in meiotic cell cycle checkpoint
EggNOG OGsKOG2175@1,KOG2175@2759
Ec32 ortholog descriptionDomain of unknown function DUF625
Ec32 orthologEc-10_003590.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03400
Hectar predicted targeting categoryother localisation
Exons3
Model size418
Cds size417
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13406.2554.1prot_E-fasciculatus_F_contig13406.2554.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13406 2031..3381 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927842.069773-CDS-E-fasciculatus_F_contig13406:2030..21661622927842.069773-CDS-E-fasciculatus_F_contig13406:2030..2166Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13406 2031..2166 -
1695995718.5164425-CDS-E-fasciculatus_F_contig13406:2030..21661695995718.5164425-CDS-E-fasciculatus_F_contig13406:2030..2166Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13406 2031..2166 -
1622927842.0821369-CDS-E-fasciculatus_F_contig13406:2630..27881622927842.0821369-CDS-E-fasciculatus_F_contig13406:2630..2788Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13406 2631..2788 -
1695995718.5315135-CDS-E-fasciculatus_F_contig13406:2630..27881695995718.5315135-CDS-E-fasciculatus_F_contig13406:2630..2788Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13406 2631..2788 -
1622927842.0941303-CDS-E-fasciculatus_F_contig13406:3258..33811622927842.0941303-CDS-E-fasciculatus_F_contig13406:3258..3381Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13406 3259..3381 -
1695995718.5397668-CDS-E-fasciculatus_F_contig13406:3258..33811695995718.5397668-CDS-E-fasciculatus_F_contig13406:3258..3381Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13406 3259..3381 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13406.2554.1

>prot_E-fasciculatus_F_contig13406.2554.1 ID=prot_E-fasciculatus_F_contig13406.2554.1|Name=mRNA_E-fasciculatus_F_contig13406.2554.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=139bp
FKVLLADNLFVDMAGVFEYDLELKEKGDHRKFLTQTASFKQVLPIPDEEV
VQKIHQNFRITFLKDALLRPMMDDAVVGTLNSLTYFNNTEIVQSLQHTDY
VRDVFLLLNEPETGSGGKKRRDILMFLRELFNMAKTLQA
back to top

mRNA from alignment at E-fasciculatus_F_contig13406:2030..3381-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13406.2554.1 ID=mRNA_E-fasciculatus_F_contig13406.2554.1|Name=mRNA_E-fasciculatus_F_contig13406.2554.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1352bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13406:2030..3381- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCAAGGTGCTTCTGGCGGACAACTTGTTCGTGGACATGGCGGGTGTGTT CGAGTACGACCTGGAGCTCAAGGAAAAGGGGGACCACAGGAAATTTCTCA CGCAAACAGCGTCGTTCAAGCAGGTGCATCATGTTTTTTGTTTCGTTTCT TATACTGCTGTATACATAGTCATGACTTACCAGTAGTATCGTCGTGGTTG TCGACAGTACTATACTTACTGTAATTCCAACCCCGCCCCAGGAAAAACAT GTCGAGAAAACTATCAAGACTGCTGTACACAGATTTGTAATTTTTGTTTT TTTTGTTTTTTGTTCGGTGAGATCCCCTGGGCTGTTTCGAGTCGAAAACA CGTCAGCTTTGTGTGGGCTGTTCGAGCTTGGTGAACGTCACTGATGACAG CTAGCAGTTGATTCACACCAACACATGCTTTACTTTCATCTTGCATCACG CCTTGATGACGCTGCTATGCATATCTTGCTCTGACAAACCCACGCCTGAG GCGCGCCTTGTATCTATGAAGGAGTTTTTGCTAAACTCATGGTGGGAAAT GTTTAGTTAACAACAAGGCATGCTGTGGTATCCGATCAATCAGGTGCTGC CGATACCGGACGAGGAGGTGGTGCAGAAGATCCACCAGAACTTTCGGATA ACTTTCCTCAAGGACGCGTTGCTAAGGCCGATGATGGACGACGCCGTCGT GGGGACGCTCAACTCCCTCACGTACTTCAACAACACGGAGATCGTGCAGA GGTGAGTGGATTGTCGTCTGCTAGTTGCTGCTGCTGCTACTGCTGTTTTG TCTTCATATCATAATCGTACGTGAACTGTCTTGCCGCTGGTAAATATGGA TGATTGCTGCTGCTGCTGCTGCTGTTGCTGTTGCCTTCAAATTTTTGAAG CAGTAGGTAACCATCGTGCTGCTGGTACAGGTGGACAATTGTTGTTGTTG CTGTTGTCTTCAAGTTAACAACCGTTCCGGTGTTTGCCCAATGCTGTACC CTGTACCTCCAAACGTCCGTACCGGTACATCTGACGCAGATACCTTCCGT GTTCACGGGCTAATGTAATTCCCCATTCATTGTTTCCTGTGTGTGTTTTT ATTATTAGCATCGACCGCGCTAACCGGCTGACCAATGAAAATACGTCGTG TCTCAAATGTGTGTTTTTGTCTTTGCTCCCGACACCAATATCTTTGGAAA AAAAACACGAAACAGCTTGCAGCACACGGACTACGTGCGGGACGTGTTCT TGCTGCTGAACGAGCCGGAGACAGGGAGCGGGGGCAAGAAGCGGCGGGAC ATCCTCATGTTCCTCAGAGAGCTCTTCAACATGGCCAAGACCCTGCAGGC AA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13406:2030..3381-

>mRNA_E-fasciculatus_F_contig13406.2554.1 ID=mRNA_E-fasciculatus_F_contig13406.2554.1|Name=mRNA_E-fasciculatus_F_contig13406.2554.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=834bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13406:2030..3381- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCAAGGTGCTTCTGGCGGACAACTTGTTCGTGGACATGGCGGGTGTGTT
CGAGTACGACCTGGAGCTCAAGGAAAAGGGGGACCACAGGAAATTTCTCA
CGCAAACAGCGTCGTTCAAGCAGTTCAAGGTGCTTCTGGCGGACAACTTG
TTCGTGGACATGGCGGGTGTGTTCGAGTACGACCTGGAGCTCAAGGAAAA
GGGGGACCACAGGAAATTTCTCACGCAAACAGCGTCGTTCAAGCAGGTGC
TGCCGATACCGGACGAGGAGGTGGTGCAGAAGATCCACCAGAACTTTCGG
ATAACTTTCCTCAAGGACGCGTTGCTAAGGCCGATGATGGACGACGCCGT
CGTGGGGACGCTCAACTCCCTCACGTACTTCAACAACACGGAGATCGTGC
AGAGGTGCTGCCGATACCGGACGAGGAGGTGGTGCAGAAGATCCACCAGA
ACTTTCGGATAACTTTCCTCAAGGACGCGTTGCTAAGGCCGATGATGGAC
GACGCCGTCGTGGGGACGCTCAACTCCCTCACGTACTTCAACAACACGGA
GATCGTGCAGAGCTTGCAGCACACGGACTACGTGCGGGACGTGTTCTTGC
TGCTGAACGAGCCGGAGACAGGGAGCGGGGGCAAGAAGCGGCGGGACATC
CTCATGTTCCTCAGAGAGCTCTTCAACATGGCCAAGACCCTGCAGGCACT
TGCAGCACACGGACTACGTGCGGGACGTGTTCTTGCTGCTGAACGAGCCG
GAGACAGGGAGCGGGGGCAAGAAGCGGCGGGACATCCTCATGTTCCTCAG
AGAGCTCTTCAACATGGCCAAGACCCTGCAGGCA
back to top