mRNA_E-fasciculatus_F_contig13406.2553.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-fasciculatus_F_contig13406.2553.1
Unique Name	mRNA_E-fasciculatus_F_contig13406.2553.1
Type	mRNA
Organism	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)

Homology

[Close]

BLAST of mRNA_E-fasciculatus_F_contig13406.2553.1 vs. uniprot
Match: D7FI53_ECTSI (SMK-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI53_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 2.670e-47
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 1

Query:    1 VAPRDAFYRHLWDEVPLFEVFIPVLKDPAASVMERTACMEVLLASLTHDPALFRTHILKEGGHPLLPPTVNNQAKSTSAAGGG 249
            VAPRDAFYRHLWDEVPLFEVFIPVLKDP ASVMERTACMEVLLASLTHDPALFRTHILKEGGHPLLPPTVNNQAKSTS+A GG
Sbjct:  329 VAPRDAFYRHLWDEVPLFEVFIPVLKDPDASVMERTACMEVLLASLTHDPALFRTHILKEGGHPLLPPTVNNQAKSTSSAAGG 411

[Close]

BLAST of mRNA_E-fasciculatus_F_contig13406.2553.1 vs. uniprot
Match: A0A7S3YI92_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YI92_HETAK)

HSP 1 Score: 80.9 bits (198), Expect = 4.720e-16
Identity = 40/83 (48.19%), Postives = 53/83 (63.86%), Query Frame = 1

Query:   10 RDAFYRHLWDEVPLFEVFIPVLKDPAASVMERTACMEVLLASLTHDPALFRTHILKEGGHPLLPP---TVNNQAKSTSAAGGG 249
            RD FYR+L  E   F+VF+ VL D  A++  R  CMEVL+ASL HDP+L R +IL++GGHP LP    + +   +   A GGG
Sbjct:  338 RDQFYRYLQSECLFFDVFVTVLADEEATIPARLCCMEVLVASLFHDPSLLRNYILQKGGHPPLPTNFGSASQAGRKDEAKGGG 420

[Close]

BLAST of mRNA_E-fasciculatus_F_contig13406.2553.1 vs. uniprot
Match: A0A7S0U7C8_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U7C8_HEMAN)

HSP 1 Score: 48.1 bits (113), Expect = 3.340e-5
Identity = 28/61 (45.90%), Postives = 37/61 (60.66%), Query Frame = 1

Query:   16 AFYRHLWDEVPLFEVFIPVLKDPAASVMERTACMEVLLASLTHDPALFRTHILKEGGHPLL 198
            AFYR L  +  LF +F   L    A V  R+AC ++LL +L HDP+L R ++LKE G  LL
Sbjct:   28 AFYRSLCSQ-GLFGIFQGGLSAEDAGV--RSACTDILLCTLNHDPSLLREYVLKESGGSLL 85

The following BLAST results are available for this feature:

BLAST of mRNA_E-fasciculatus_F_contig13406.2553.1 vs. uniprot

BLAST of mRNA_E-fasciculatus_F_contig13406.2553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D7FI53_ECTSI	2.670e-47	96.39	SMK-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A7S3YI92_HETAK	4.720e-16	48.19	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A7S0U7C8_HEMAN	3.340e-5	45.90	Hypothetical protein (Fragment) n=1 Tax=Hemiselmis...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-fasciculatus_F_contig13406	contig	E-fasciculatus_F_contig13406:3..1493 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	169.5
Seed ortholog evalue	6.7e-40
Seed eggNOG ortholog	2880.D7FI53
Preferred name	SMEK2
KEGG ko	ko:K17491
KEGG Pathway	ko04212,ko04922,map04212,map04922
GOs	GO:0000003,GO:0000075,GO:0000228,GO:0000775,GO:0000785,GO:0000790,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005938,GO:0006109,GO:0006111,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006464,GO:0006470,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006935,GO:0006950,GO:0006952,GO:0006974,GO:0007049,GO:0007063,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0007399,GO:0007405,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0008287,GO:0008356,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010165,GO:0010212,GO:0010564,GO:0010604,GO:0010639,GO:0010646,GO:0010648,GO:0010675,GO:0010676,GO:0010906,GO:0010907,GO:0010921,GO:0010948,GO:0015630,GO:0016311,GO:0016604,GO:0016607,GO:0017145,GO:0019208,GO:0019211,GO:0019216,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019888,GO:0022008,GO:0022402,GO:0022414,GO:0023051,GO:0023052,GO:0023057,GO:0030154,GO:0030234,GO:0030289,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031974,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033313,GO:0033554,GO:0034641,GO:0035303,GO:0035304,GO:0035556,GO:0036211,GO:0036445,GO:0040011,GO:0040020,GO:0042221,GO:0042330,GO:0042742,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043255,GO:0043327,GO:0043412,GO:0043666,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045165,GO:0045175,GO:0045722,GO:0045739,GO:0045786,GO:0045787,GO:0045835,GO:0045875,GO:0045913,GO:0045930,GO:0045931,GO:0045935,GO:0046483,GO:0048103,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051246,GO:0051301,GO:0051321,GO:0051336,GO:0051445,GO:0051447,GO:0051598,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0055057,GO:0055059,GO:0060255,GO:0061351,GO:0062012,GO:0062013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071944,GO:0072089,GO:0072395,GO:0072411,GO:0072462,GO:0072542,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0098542,GO:0098687,GO:0098722,GO:0098772,GO:0099568,GO:1901360,GO:1901564,GO:1901976,GO:1901977,GO:1902494,GO:1902659,GO:1902660,GO:1903046,GO:1903293,GO:1904289,GO:1904290,GO:2000001,GO:2000002,GO:2000241,GO:2000242,GO:2000779,GO:2000781,GO:2001020,GO:2001021,GO:2001022,GO:2001032,GO:2001034,GO:2001251
EggNOG free text desc.	signal transduction involved in meiotic cell cycle checkpoint
EggNOG OGs	KOG2175@1,KOG2175@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01009,ko03400
Hectar predicted targeting category	other localisation
Exons	3
Model size	249
Cds size	249
Stop	0
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-fasciculatus_F_contig13406.2553.1	prot_E-fasciculatus_F_contig13406.2553.1	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	polypeptide	E-fasciculatus_F_contig13406 3..1493 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927841.999025-CDS-E-fasciculatus_F_contig13406:2..72	1622927841.999025-CDS-E-fasciculatus_F_contig13406:2..72	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig13406 3..72 -
1695995718.4670339-CDS-E-fasciculatus_F_contig13406:2..72	1695995718.4670339-CDS-E-fasciculatus_F_contig13406:2..72	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig13406 3..72 -
1622927842.0116987-CDS-E-fasciculatus_F_contig13406:701..823	1622927842.0116987-CDS-E-fasciculatus_F_contig13406:701..823	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig13406 702..823 -
1695995718.4870834-CDS-E-fasciculatus_F_contig13406:701..823	1695995718.4870834-CDS-E-fasciculatus_F_contig13406:701..823	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig13406 702..823 -
1622927842.0266025-CDS-E-fasciculatus_F_contig13406:1436..1493	1622927842.0266025-CDS-E-fasciculatus_F_contig13406:1436..1493	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig13406 1437..1493 -
1695995718.4968543-CDS-E-fasciculatus_F_contig13406:1436..1493	1695995718.4968543-CDS-E-fasciculatus_F_contig13406:1436..1493	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig13406 1437..1493 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-fasciculatus_F_contig13406:3..1493-
coding sequence from alignment at E-fasciculatus_F_contig13406:3..1493-

protein sequence of mRNA_E-fasciculatus_F_contig13406.2553.1

>prot_E-fasciculatus_F_contig13406.2553.1 ID=prot_E-fasciculatus_F_contig13406.2553.1|Name=mRNA_E-fasciculatus_F_contig13406.2553.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=83bp
VAPRDAFYRHLWDEVPLFEVFIPVLKDPAASVMERTACMEVLLASLTHDP
ALFRTHILKEGGHPLLPPTVNNQAKSTSAAGGG

mRNA from alignment at E-fasciculatus_F_contig13406:3..1493-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-fasciculatus_F_contig13406.2553.1 ID=mRNA_E-fasciculatus_F_contig13406.2553.1|Name=mRNA_E-fasciculatus_F_contig13406.2553.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1491bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13406:3..1493- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTGCGCCCAGAGACGCGTTTTACCGCCACCTGTGGGACGAGGTCCCCCT
GTTCGAGGTAAGCAAGAACAACCTCACTTCACATGAAAACAAACAAACCG
TTTGGATGGATGATATTTCGACTGAATGAATGGATAATGGGGTGATATTT
CGACTGAAATAGATATGTGTGCGCTCGATGTTCATGCGCACCGGAAATGT
GGGACCGGGGTGTCGGGAGTACGGAAGGAAGAGAGGCGAGCCTATCGTTG
CTCCTGGAGGCACGAACGGCACGGACCAAGGGCCAAGGGCAGGAGCTCCT
TTCCGCGGTCACACCGGAGGGTTGGGGTGCCTACCCCTGAAGCCCGCTAC
TAACCCCTTAGAGCGGTGCTTGCCTTCAAGCGCGAAAATCGAAAATTAGT
GCACCTGCTTTCTTTCCAAAGTGTTCTCTTGGTGTGTCTTGGGGGGGTGG
TGAGCGATCGATCGGTCACGACAAGAAAGTGCTGTGCGTTAGCACCGATT
ATTGTTTTTTTTTTGTATATGCTTCAAACCTCAAAGCAGCGCTATCAGCA
CGTGTGCCGTGTTGATAAAAGTGAAAAAAAAAAAAAGCTTGAGAAAATGC
GTGCACCAAATGTAGATTACATAACGACGCAAAATGGCGGTCGATGCCAC
CGCTGCCCACGCAACGACAGGTGTTCATCCCGGTCTTGAAAGACCCCGCC
GCGAGCGTAATGGAGAGGACGGCGTGCATGGAGGTGCTGCTGGCCTCGCT
CACGCACGATCCGGCGCTGTTTCGGACACATATCCTCAAAGAGTGAGCGA
GAGGGGCAAAGGAGACCCAACCCGGAGAGGGAGAAGCTCTTGGTTGATGA
TGTCGGTGTAATTTGTTGACGAACGGGGCTGGAACTTTCTTGACGAGGTT
TTTTTTTTTAGCATGTAATGCTGACATGTTTGTCCCTCGTGGATTGTTAG
TGGTTAGTGGTTGTTGTGGATGATAAGTTTGTCTTTTGTGTGGTTCTCAT
GGTCGATGGCTTGAAGAATTGATTCTCTACCATTATATGTTCCTTTTCTA
AACACCCACTCTCCTATACCCACCCCTCCCCCTTAACAAACGCCTGGGAA
ACGCCCGGCATGACCCGCCTAGTCTTGGGGCGAAGGTGTGATGGAAAGAA
AAACAGAGCCCATGGTATAGTCTAGCAGTACCCGATAGTGTAACCATGCC
CTTGGTAACGATTACACCGAACCCGCCCACTTCCTCCTCTCTCCCTCCTG
CGTACCCCCGTGCCTCTACCCCCTCCATACGCCGCGTTACCTCGTCATAC
TTTTTTTTTGTCCTCTTCTTATCCCCTACCACCTCTGCTATGTCGCATTA
CCTTGTCATGCTTTTTTTATTGTCCCCTTCTGATCCCCTTCCCCCTTCAT
ACTCTTGTGGTCGTCAAGCAGGGGAGGGCACCCTCTATTACCCCCGACGG
TGAACAACCAGGCGAAGAGCACATCCGCCGCGGGGGGGGGA

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13406:3..1493-

>mRNA_E-fasciculatus_F_contig13406.2553.1 ID=mRNA_E-fasciculatus_F_contig13406.2553.1|Name=mRNA_E-fasciculatus_F_contig13406.2553.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=498bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13406:3..1493- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTGCGCCCAGAGACGCGTTTTACCGCCACCTGTGGGACGAGGTCCCCCT
GTTCGAGGTTGCGCCCAGAGACGCGTTTTACCGCCACCTGTGGGACGAGG
TCCCCCTGTTCGAGGTGTTCATCCCGGTCTTGAAAGACCCCGCCGCGAGC
GTAATGGAGAGGACGGCGTGCATGGAGGTGCTGCTGGCCTCGCTCACGCA
CGATCCGGCGCTGTTTCGGACACATATCCTCAAAGAGTGTTCATCCCGGT
CTTGAAAGACCCCGCCGCGAGCGTAATGGAGAGGACGGCGTGCATGGAGG
TGCTGCTGGCCTCGCTCACGCACGATCCGGCGCTGTTTCGGACACATATC
CTCAAAGAGGGAGGGCACCCTCTATTACCCCCGACGGTGAACAACCAGGC
GAAGAGCACATCCGCCGCGGGGGGGGGAGGGAGGGCACCCTCTATTACCC
CCGACGGTGAACAACCAGGCGAAGAGCACATCCGCCGCGGGGGGGGGA