mRNA_E-fasciculatus_F_contig1340.2551.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1340.2551.1 vs. uniprot
Match: A0A6H5JFL6_9PHAE (tRNA(Ile)-lysidine synthetase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL6_9PHAE) HSP 1 Score: 404 bits (1039), Expect = 4.950e-139 Identity = 200/235 (85.11%), Postives = 207/235 (88.09%), Query Frame = 1
Query: 1 VPSLLLRHRLGRGIAANTDNSPLSYANLRLLMRQVDGGDRKWSISLGGAYYLRRVGDLLRIEQSPADGGSMVSGLEGRTVSEQGIVRRSADAATTPWEMVVSPWRKGGSVGSDEGGGDGHEEGRAMGAGMVLFNVAAGARLHVRRKKDGDRFRPAWRDRPAKLKDFLRGQGVPLHRRDEVALICDHHDAVIAVYPSYPGFGVCQDGTGEEPIRVRIAGTPLFCPRPEDRGGAPTS 705
+P L+ L R I ANT NSPLSYANLRLLMRQVDGGDRKWSISL G YYLRRVGDLLRIEQSPADGG +VSGLEGR VSEQGIVR S DAATTPWEMVVSPW +GGS+ G GH EGRA AGMVLFNVAAGARLHVRRKKDGDRF+PAWRDRPAKLKDFLRGQGVPLHRRDEVALICDHHD+VIAVYPSYPGFGVCQD TGEEPIRVRIAGTPLFCPRPEDRGGAP S
Sbjct: 170 LPELVREELLHRFIVANTGNSPLSYANLRLLMRQVDGGDRKWSISLEGGYYLRRVGDLLRIEQSPADGGIIVSGLEGRVVSEQGIVRHSTDAATTPWEMVVSPWGEGGSIALGGEGDSGHGEGRATEAGMVLFNVAAGARLHVRRKKDGDRFQPAWRDRPAKLKDFLRGQGVPLHRRDEVALICDHHDSVIAVYPSYPGFGVCQDSTGEEPIRVRIAGTPLFCPRPEDRGGAPAS 404
BLAST of mRNA_E-fasciculatus_F_contig1340.2551.1 vs. uniprot
Match: D7FGW8_ECTSI (tRNA(Ile)-lysidine synthetase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW8_ECTSI) HSP 1 Score: 335 bits (859), Expect = 6.820e-110 Identity = 172/206 (83.50%), Postives = 176/206 (85.44%), Query Frame = 1
Query: 106 DGGDRKWSIS----LGGAYYLRR--VGDLLRIEQSPADGGSMVSGLEGRTVSEQGIVRRSADAATTPWEMVVSPWRKGGSVGSDEGGGDGHEEGRAMGAGMVLFNVAAGARLHVRRKKDGDRFRPAWRDRPAKLKDFLRGQGVPLHRRDEVALICDHHDAVIAVYPSYPGFGVCQDGTGEEPIRVRIAGTPLFCPRPEDRGGAPTS 705
DG ++ W+ S L L R VGDLLRIEQSPADGG MVSGLEGRTVSEQGIVR S DAA TPWEMVVSPW +GGSVG E G GH EGRA AGMVLFNVAAGARLHVRRKKDGDRFRPAWRDRPAKLKDFLRGQGVPLHRRDEVALICDHHDAVIAVYPSYPGFGVCQD TGEEPIRVRIAGTPLFCPRPEDRGGAP S
Sbjct: 337 DGSEQGWAGSDLPELVREELLHRFIVGDLLRIEQSPADGGIMVSGLEGRTVSEQGIVRHSTDAAITPWEMVVSPWGEGGSVGLGEEGDSGHGEGRATEAGMVLFNVAAGARLHVRRKKDGDRFRPAWRDRPAKLKDFLRGQGVPLHRRDEVALICDHHDAVIAVYPSYPGFGVCQDSTGEEPIRVRIAGTPLFCPRPEDRGGAPAS 542
BLAST of mRNA_E-fasciculatus_F_contig1340.2551.1 vs. uniprot
Match: A0A4D9DAX5_9STRA (tRNA(Ile)-lysidine synthetase n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAX5_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 4.020e-18 Identity = 80/243 (32.92%), Postives = 109/243 (44.86%), Query Frame = 1
Query: 1 VPSLLLRHRLGRGIAANTDNS-PLSYANLRLLMRQVD-------GGDRK---WSISLGGAYYLRRVGDLLRIEQSPADGGSMVSGLEGRTVSEQGIVRRSADAAT-----TPWEMVVSPWRKGGSVGSDEGGGDGHEEGRAMGAGMVLFNVAAGARLHVRRKKDGDRFRPAWRDRPAKLKDFLRGQGVPLHRRDEVALIC-------DHHDAVIAVYP----SYPGFGVCQDGTGEEPIRVRI 648
+P LL L R +A ++ + LSYA +R M Q+ GG +K W + +G + L R G +LR+ Q A +G E V DA T W++ S S S A G MVL +V GARL +R +++GDRF P WR P KLKDFLR Q VPLHRRDEV LI + VI ++P + P + EP+ +R+
Sbjct: 434 LPRLLQEELLHRLVARASNGAVSLSYAQIRRAMEQLQRDEEEAQGGHKKKLQWRLEMGNGWLLVRQGQVLRLVQEQAHRNP-----KGNWQQENFPVSLP-DAGVECLLPTGWQISASRLSASPSSSSSS----------APGWSMVLPHVPMGARLRLRNRQEGDRFHPPWRQSPVKLKDFLRAQNVPLHRRDEVMLIVLLSNGPLGVKEEVIGLHPLGCVAAPSLDSQATNSALEPLAIRL 660
BLAST of mRNA_E-fasciculatus_F_contig1340.2551.1 vs. uniprot
Match: A0A835Z1B5_9STRA (tRNA(Ile)-lysidine synthetase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1B5_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 5.670e-18 Identity = 61/173 (35.26%), Postives = 81/173 (46.82%), Query Frame = 1
Query: 112 GDRKWSISLGGAYYLRRVGDLLRIEQSPADG--------------------GSMVSGLEGRTVSEQGIVRRSADAATTPWEMV---VSPWRKGGSVGSDEGGGDGHEEGRAMG----AGMVLFNVAAGARLHVRRKKDGDRFRPAWRDRPAKLKDFLRGQGVPLHRRDEVALI 549
G +W + +GG + R GD+LR+ + G +G V+ R A WE+ + G + G G + A + MVL+NV GA L VRR++DGDRFRP WR PAK+KDFLRGQGVPLHRRD+VAL+
Sbjct: 477 GSARWHVDVGGGAAVMRDGDVLRLAHAMGAAXXXXXXXXXXXXXXXXXXXXGERTAGCVAGEVTVDEAEARCTITAPPDWEVTATRIGVAEAAGIAAAARDGTSGADRPPAXXXXXXSDMVLYNVPPGAVLRVRRRRDGDRFRPRWRATPAKVKDFLRGQGVPLHRRDDVALV 649
BLAST of mRNA_E-fasciculatus_F_contig1340.2551.1 vs. uniprot
Match: A0A8J5XS81_DIALT (tRNA(Ile)-lysidine synthetase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XS81_DIALT) HSP 1 Score: 84.0 bits (206), Expect = 6.200e-15 Identity = 67/217 (30.88%), Postives = 100/217 (46.08%), Query Frame = 1
Query: 70 SYANLRLLMRQVDGGDRKWSISLGGAYYLRRVGDLLRIEQSPADGGSMVSGLEGRTVSEQGIVRRSADAATT---PWEMVVSPWRKGGSVGSDEGGGDGHEEGRAMGAGMV-LFNVAAGARLHVRRKKDGDRFRPAWRDRPAKLKDFLRGQGVPLHRRDEVALICDHHD---------------------AVIAVYPSYPGFGVCQDGTGEEPIRVR 645
+YA +R + ++ + + + L G + LRR G+ + S G++ GR E G +A +A + VV+ R+G V HE A + L+NV G+RL VR +++GD F PAWR+RP KLKDFLRGQ VPLH R++V LI + V+AVYP++ G D P+ +
Sbjct: 392 TYAEVRRALDRLRSPNAQSDLHLAGGWLLRRNGNKALVLPS---NGALGLAPRGRGALETGAWAAAAGSAVCVAHAADCVVNV-REGEEV---------HETDETDDAPTITLYNVPPGSRLRVRARREGDTFTPAWRERPVKLKDFLRGQKVPLHARNDVRLIAWDEERTDGTNGQPIGAGRADASTSPTVLAVYPTHVGRACAHDEGVHPPLSAK 595
BLAST of mRNA_E-fasciculatus_F_contig1340.2551.1 vs. uniprot
Match: A0A7S1J5B6_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1J5B6_9EUGL) HSP 1 Score: 78.6 bits (192), Expect = 6.270e-15 Identity = 42/89 (47.19%), Postives = 53/89 (59.55%), Query Frame = 1
Query: 286 PWEMVVSPWRKGGSVGSDEGGGDGHEEGRAMGAGMVLFNVAAGARLHVRRKKDGDRFRPAWRDRPAKLKDFLRGQGVPLHRRDEVALIC 552
P E+VV R G+ +G + +A MV++NV GA L VR ++ GDRF P WR KLKDFLRGQGVPLH RD V ++C
Sbjct: 19 PPELVVHAHRPDPGAGAGQGSPE-----QASPGPMVIYNVPFGAALEVRYRRPGDRFHPPWRPSAVKLKDFLRGQGVPLHERDRVPVLC 102 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1340.2551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1340.2551.1 >prot_E-fasciculatus_F_contig1340.2551.1 ID=prot_E-fasciculatus_F_contig1340.2551.1|Name=mRNA_E-fasciculatus_F_contig1340.2551.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=236bp VPSLLLRHRLGRGIAANTDNSPLSYANLRLLMRQVDGGDRKWSISLGGAYback to top mRNA from alignment at E-fasciculatus_F_contig1340:16304..18577- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1340.2551.1 ID=mRNA_E-fasciculatus_F_contig1340.2551.1|Name=mRNA_E-fasciculatus_F_contig1340.2551.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2274bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1340:16304..18577- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1340:16304..18577- >mRNA_E-fasciculatus_F_contig1340.2551.1 ID=mRNA_E-fasciculatus_F_contig1340.2551.1|Name=mRNA_E-fasciculatus_F_contig1340.2551.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1416bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1340:16304..18577- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |