mRNA_E-fasciculatus_F_contig134.2548.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig134.2548.1 vs. uniprot
Match: D7G468_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G468_ECTSI) HSP 1 Score: 327 bits (837), Expect = 8.970e-113 Identity = 170/172 (98.84%), Postives = 170/172 (98.84%), Query Frame = 1
Query: 1 QAKAPKWYSGDDVKPKAAPQKHNPTKLRSTITPGTILILLSGRFRGKRVVFLKQLPSGTLLVTGPYSVNGVPMRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFFEQGAKSSTVSDTRKADQKTVDAGVLAAMKNPMLKAYLNAKFSLKKGDRPHEMIF 516
QAKAPKWYSGDDVKPKAAPQKHNPTKLRSTITPGTILILLSGRFRGKRVVFLKQLPSGTLLVTGPYSVNGVPMRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFFEQGAKSSTVSD RKADQKTVDAGVLAAM NPMLKAYLNAKFSLKKGDRPHEMIF
Sbjct: 8 QAKAPKWYSGDDVKPKAAPQKHNPTKLRSTITPGTILILLSGRFRGKRVVFLKQLPSGTLLVTGPYSVNGVPMRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFFEQGAKSSTVSDKRKADQKTVDAGVLAAMTNPMLKAYLNAKFSLKKGDRPHEMIF 179
BLAST of mRNA_E-fasciculatus_F_contig134.2548.1 vs. uniprot
Match: A0A835YT51_9STRA (60S ribosomal protein L6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT51_9STRA) HSP 1 Score: 214 bits (544), Expect = 4.610e-68 Identity = 114/172 (66.28%), Postives = 131/172 (76.16%), Query Frame = 1
Query: 16 KWYSGDDVKP----KAAPQKHNPTKLRSTITPGTILILLSGRFRGKRVVFLKQLPSGTLLVTGPYSVNGVPMRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFFEQGAKSSTVSDTRKADQKTVDAGVLAAM-KNPMLKAYLNAKFSLKKGDRPHEMIF 516
+WY DD+K KA H PTKLRS+ITPGT+ +LLSGRFRGKRVVFLKQ+ SGTLLVTGPY VNGVP+RRVNQAYVIATS +DVSKV + A DD+YF R A KT ED FF Q +K S VSD +K DQ VDA +LA + K+ +LKAYLNAKFSL K DRPHEM+F
Sbjct: 14 RWYPADDIKAPRKSKAKRSVHKPTKLRSSITPGTVCVLLSGRFRGKRVVFLKQMASGTLLVTGPYKVNGVPLRRVNQAYVIATSTKLDVSKVDVSAIDDAYFARAPEAKKTAEDAFFAQASKESVVSDQKKKDQDVVDASILAGLSKDKLLKAYLNAKFSLTKKDRPHEMVF 185
BLAST of mRNA_E-fasciculatus_F_contig134.2548.1 vs. uniprot
Match: A0A7S1U5W8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5W8_9STRA) HSP 1 Score: 199 bits (506), Expect = 1.560e-61 Identity = 106/174 (60.92%), Postives = 135/174 (77.59%), Query Frame = 1
Query: 1 QAKAPKWYSGDDVK-PKAAPQKHNPTKLRSTITPGTILILLSGRFRGKRVVFLKQLPSGTLLVTGPYSVNGVPMRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFFEQGAKSSTVSDTRKADQKTVDAGVLAAMKN-PMLKAYLNAKFSLKKGDRPHEMIF 516
+ + P Y DDVK P + + PTKLR++ITPGT+LI+L+GRFRGKRVVFLKQL SGTLLVTGPY VNGVP+RRVNQAYVIATS+ VD++ V++P DD +F RE+ +KTDE+QFF ++ VS RK QK VDAG+LAA+K P+L+AYL A+FSL+ GD+PH+M F
Sbjct: 67 EGEGPAMYPADDVKKPLMRFRVNKPTKLRASITPGTVLIMLAGRFRGKRVVFLKQLSSGTLLVTGPYKVNGVPLRRVNQAYVIATSVVVDLAGVSLPDIDDEFFAREKKESKTDEEQFFSNEPTATVVSQARKDAQKAVDAGILAAVKKVPLLQAYLGARFSLRNGDKPHKMKF 240
BLAST of mRNA_E-fasciculatus_F_contig134.2548.1 vs. uniprot
Match: K3WPZ3_GLOUD (60S ribosomal protein L6 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WPZ3_GLOUD) HSP 1 Score: 189 bits (480), Expect = 1.350e-57 Identity = 108/180 (60.00%), Postives = 131/180 (72.78%), Query Frame = 1
Query: 4 AKAPKWYSGDDVKPKAAPQK-----HNPTKLRSTITPGTILILLSGRFRGKRVVFLKQLPSGTLLVTGPYSVNGVPMRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATK-TDEDQFFEQGAKSST--VSDTRKADQKTVDAGVLAAMKN-PMLKAYLNAKFSLKKGDRPHEMIF 516
+KA KWY D + K A K KLR +ITPGT+LILLSGRFRGKRVVFLKQLPSGTLLVTGPY VNGVP+RRVNQAYVIATS V++S VT+P DDSYF +E+ + K + E+QFF Q +S +SD RK DQK +DA ++ +K+ P L+AYLNAKF+L K DR HE+ F
Sbjct: 61 SKAAKWYPADYIPKKLASAKTARNSKKTAKLRKSITPGTVLILLSGRFRGKRVVFLKQLPSGTLLVTGPYKVNGVPLRRVNQAYVIATSTKVELSDVTLPDIDDSYFVKEKPSKKDSKEEQFFAQSGAASAPAISDKRKQDQKAIDAILMKKLKDEPYLQAYLNAKFTLTKNDRVHELQF 240
BLAST of mRNA_E-fasciculatus_F_contig134.2548.1 vs. uniprot
Match: A0A1Y1Y938_9FUNG (Ribosomal_L6e_N domain-containing protein n=2 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y938_9FUNG) HSP 1 Score: 187 bits (474), Expect = 1.030e-56 Identity = 102/174 (58.62%), Postives = 131/174 (75.29%), Query Frame = 1
Query: 7 KAPKWYSGDDV-KPKAAPQKHNPTKLRSTITPGTILILLSGRFRGKRVVFLKQLPSGTLLVTGPYSVNGVPMRRVNQAYVIATSMSVDVSKVTIPAA-DDSYFTREEVA-TKTDEDQFFEQGAKSSTVSDTRKADQKTVDAGVLAAMKN-PMLKAYLNAKFSLKKGDRPHEMIF 516
KA +WY +DV +PKA+ + PTKLR+TITPGT+L+LL+GRFRGKRVVFLKQL SG LLVTGPY VNGVP+RRVNQAYV+ATS VD+S V + A DD+YF +E+ A K E++FF + K + ++R ADQK+VD +LAA+ P L++YLNA F+L+KG PH M F
Sbjct: 65 KASRWYPAEDVAQPKASRKVAKPTKLRATITPGTVLVLLAGRFRGKRVVFLKQLASGLLLVTGPYKVNGVPLRRVNQAYVLATSTKVDLSNVNVDAKFDDAYFKKEKAAKAKGTEEEFFGEEQKKKVIPESRSADQKSVDKEILAAVSQVPHLRSYLNASFTLRKGQAPHSMKF 238
BLAST of mRNA_E-fasciculatus_F_contig134.2548.1 vs. uniprot
Match: K3YVL3_SETIT (60S ribosomal protein L6 n=13 Tax=Panicoideae TaxID=147369 RepID=K3YVL3_SETIT) HSP 1 Score: 185 bits (469), Expect = 3.300e-56 Identity = 101/175 (57.71%), Postives = 129/175 (73.71%), Query Frame = 1
Query: 4 AKAPKWYSGDDVKPKA-APQKHNPTKLRSTITPGTILILLSGRFRGKRVVFLKQLPSGTLLVTGPYSVNGVPMRRVNQAYVIATSMSVDVSKVTIPAADDSYFTRE--EVATKTDEDQFFEQGAKSSTVSDTRKADQKTVDAGVLAAMKN-PMLKAYLNAKFSLKKGDRPHEMIF 516
AK PK+Y DDVKP+A + +K PTKLRSTITPGT+LILL+GRF GKRVVFLKQL SG LL++GP+ +NGVP+RRVNQ YVIATS VD+S V + DD YF RE + KT+ + F + S ++ D +K DQK VDA ++ A++ P LK YL A+FSL+ GD+PHEM+F
Sbjct: 45 AKEPKFYPADDVKPRAPSTRKPKPTKLRSTITPGTVLILLAGRFMGKRVVFLKQLKSGLLLISGPFKINGVPIRRVNQTYVIATSTKVDISGVDVSKFDDKYFAREKKQKVKKTEGELFETEKEASKSLPDFKKDDQKAVDAALIKAIEAVPELKTYLGARFSLRDGDKPHEMVF 219
BLAST of mRNA_E-fasciculatus_F_contig134.2548.1 vs. uniprot
Match: A0A7S4V8G6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V8G6_9STRA) HSP 1 Score: 185 bits (469), Expect = 3.620e-56 Identity = 102/174 (58.62%), Postives = 131/174 (75.29%), Query Frame = 1
Query: 7 KAPKWYSGDDVKPK--AAPQKHNPTKLRSTITPGTILILLSGRFRGKRVVFLKQLPSGTLLVTGPYSVNGVPMRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFF-EQGAKSSTVSDTRKADQKTVDAGVLAAMKN-PMLKAYLNAKFSLKKGDRPHEMIF 516
K+P++Y DDVK + K N K+RS+I+ GT+LILL+GRFRGKRVV LK L SG LLV+GPY +NGVP+RRV+QAYVIAT+ +VDVS + + A DD+YF R + + ED+FF AK + VS+TRKADQK VDA +L A++ PMLK YLNAKFSL KGD+PH+M+F
Sbjct: 49 KSPRFYPADDVKRPLPSRKSKKNAAKVRSSISAGTVLILLAGRFRGKRVVCLKALESGLLLVSGPYKINGVPLRRVHQAYVIATTTTVDVSAIDVSAIDDAYFARAASSGEEGEDEFFANDAAKPAVVSETRKADQKKVDAALLKAVEAVPMLKQYLNAKFSLSKGDKPHKMVF 222
BLAST of mRNA_E-fasciculatus_F_contig134.2548.1 vs. uniprot
Match: A0A1Y1Y1J0_9FUNG (60S ribosomal protein L6 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y1J0_9FUNG) HSP 1 Score: 185 bits (469), Expect = 5.890e-56 Identity = 103/175 (58.86%), Postives = 133/175 (76.00%), Query Frame = 1
Query: 7 KAPKWYSGDDV-KPKAAPQKHNPTKLRSTITPGTILILLSGRFRGKRVVFLKQLPSGTLLVTGPYSVNGVPMRRVNQAYVIATSMSVDVSKVTIPAA-DDSYFTREEVA--TKTDEDQFFEQGAKSSTVSDTRKADQKTVDAGVLAAMKN-PMLKAYLNAKFSLKKGDRPHEMIF 516
KA +WY +DV +PK + + PTKLR++ITPGT+L+LL+GRFRGKRVVFLKQL SG LLVTGPY VNGVP+RRVNQAYVIATS VD+S V + DD+YF +E+ A +KT+E+ FF++ T+S++R ADQK+VD +LAA+ P L+AYLNA F+L+KG PH M F
Sbjct: 65 KASRWYPAEDVAQPKQSRKTAKPTKLRTSITPGTVLVLLAGRFRGKRVVFLKQLASGLLLVTGPYKVNGVPLRRVNQAYVIATSTKVDLSNVKVDEKFDDAYFKKEKTAKASKTEEE-FFDEKQPKKTISESRSADQKSVDKEILAAVSGVPHLRAYLNASFTLRKGQAPHAMKF 238
BLAST of mRNA_E-fasciculatus_F_contig134.2548.1 vs. uniprot
Match: A0A6G0WU17_9STRA (60S ribosomal protein L6 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WU17_9STRA) HSP 1 Score: 185 bits (469), Expect = 5.890e-56 Identity = 104/173 (60.12%), Postives = 125/173 (72.25%), Query Frame = 1
Query: 16 KWYSGDDV-KP----KAAPQKHNPTKLRSTITPGTILILLSGRFRGKRVVFLKQLPSGTLLVTGPYSVNGVPMRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFFEQGAKSSTVSDTRKADQKTVDAGVLAAMK-NPMLKAYLNAKFSLKKGDRPHEMIF 516
KWY D V KP K A TKLR++ITPGT+LILLSGRFRGKRVVFLKQL SGTLLVTGPY VNGVP+RRVNQA+VIATS VD+S V +P +D+YF +E+ K DE+ FF Q + ++ VS+ RK DQK VDA ++ + P+LK YLNAKFSL K R HE+ F
Sbjct: 66 KWYPTDYVPKPLPSAKTARNSVKTTKLRNSITPGTVLILLSGRFRGKRVVFLKQLASGTLLVTGPYKVNGVPLRRVNQAFVIATSTKVDISDVKLPEINDAYFAKEKTHAKKDEEAFFAQSSTAAIVSEQRKKDQKEVDAALIKKINATPLLKQYLNAKFSLSKTQRVHELKF 238
BLAST of mRNA_E-fasciculatus_F_contig134.2548.1 vs. uniprot
Match: G7J9R6_MEDTR (60S ribosomal L6-like protein n=6 Tax=Trifolieae TaxID=163742 RepID=G7J9R6_MEDTR) HSP 1 Score: 184 bits (466), Expect = 1.440e-55 Identity = 104/175 (59.43%), Postives = 128/175 (73.14%), Query Frame = 1
Query: 7 KAPKWYSGDDVKPKAAPQKHNP--TKLRSTITPGTILILLSGRFRGKRVVFLKQLPSGTLLVTGPYSVNGVPMRRVNQAYVIATSMSVDVSKVTIPAADDSYFTRE-EVATKTDEDQFFEQGAKSSTV-SDTRKADQKTVDAGVLAAMKN-PMLKAYLNAKFSLKKGDRPHEMIF 516
K PK+Y DDVK K KH P TKLR++ITPGT+LILL+GRF+GKRVVFLKQLPSG LLVTGP+ +NGVP+RRVNQAYVI TS VD+S V + DD YF++E + TK E +FFE + V +K DQKTVDAG+L A+ + P LK YL A+FSLK G +PHE++F
Sbjct: 60 KPPKFYPADDVK-KPLRNKHRPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISSVNVDKFDDKYFSKESQKKTKKGESEFFEADKEDKKVLPQEKKDDQKTVDAGLLKAIDSVPDLKTYLGARFSLKAGVKPHELVF 233 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig134.2548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig134.2548.1 >prot_E-fasciculatus_F_contig134.2548.1 ID=prot_E-fasciculatus_F_contig134.2548.1|Name=mRNA_E-fasciculatus_F_contig134.2548.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=173bp QAKAPKWYSGDDVKPKAAPQKHNPTKLRSTITPGTILILLSGRFRGKRVVback to top mRNA from alignment at E-fasciculatus_F_contig134:29093..30788+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig134.2548.1 ID=mRNA_E-fasciculatus_F_contig134.2548.1|Name=mRNA_E-fasciculatus_F_contig134.2548.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1696bp|location=Sequence derived from alignment at E-fasciculatus_F_contig134:29093..30788+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig134:29093..30788+ >mRNA_E-fasciculatus_F_contig134.2548.1 ID=mRNA_E-fasciculatus_F_contig134.2548.1|Name=mRNA_E-fasciculatus_F_contig134.2548.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1038bp|location=Sequence derived from alignment at E-fasciculatus_F_contig134:29093..30788+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |