mRNA_E-fasciculatus_F_contig1339.2539.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1339.2539.1 vs. uniprot
Match: A0A6H5JQ17_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ17_9PHAE) HSP 1 Score: 492 bits (1266), Expect = 2.560e-164 Identity = 313/443 (70.65%), Postives = 330/443 (74.49%), Query Frame = 1
Query: 1 KDTDLSFTYKDPDGDDIVFDKDSELKLALRLCPGSLEISAAGKENKPANKLDSEEKIYKIAARNLREYNGVPSMTPPKLVKTLAFLKLHPHRLVKQGLAPKVLLARMKAEAANNAKLSKVPLGDGKNNEDLAESAAAGMELMSVEDDKKEWDDGFVSVEPDASATAAPIAAETPIPGNDSEEENNDAAPAVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVNGKDLRAMLQAERKITHKRHGRDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHPFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------AHMVDDHEAPGGGCRGRRGGPLFHPAHQHYAEVFDEDEGGHPGFHPHHGPPARWMAIRRRYGGGD--------GQQQRRDHYWG 1269
KDTDLSFTYKDPDGDDIVFDKDSELKLA+RLCP SLEISA KE++PA K D E ++YKIAARNLREYNGVPSMT PKL+KTLAFLKL+P RLVKQGLAPKVLLARMKAEAANNAK+SKVPLGDGKNNEDLAES AAGMELMSVEDDKKEW+DGFVS E DASA A PI A+T P ND+EEENNDAAP KK+LIHKAFI GGIQLRPREVRPLLVALDVRPCRLAKLGLV+GKDLRAML+AE+K HKR N XXXXXXXXXXXXXXX XXXXX HPFA XXXXXXXXXXXXXXXX AHM D +APGGG G RG PLFHP HQHYAEVFDEDE GHPG HPHHGPP RWMAIR +GGG GQQQRRD YWG
Sbjct: 69 KDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISATLKESEPAKKPDPEARLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGKNNEDLAESVAAGMELMSVEDDKKEWNDGFVSAESDASAAAVPITAKTSTPDNDNEEENNDAAPETKKDLIHKAFITGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDLRAMLRAEKKAAHKRCDHGNNXXXXXXXXXXXXXXXDXXXXXHRMAGRP--HPFAPPPPSPPAHQEVGDAMFAARGGRGRHGSPHXXXXXXXXXXXXXXXXPPPMKGMMRGGRXXXXXXXXXPAHMEDPGDAPGGGGGGHRGVPLFHPVHQHYAEVFDEDERGHPGVHPHHGPP-RWMAIRNSHGGGYXXXXXXXVGQQQRRDFYWG 508
BLAST of mRNA_E-fasciculatus_F_contig1339.2539.1 vs. uniprot
Match: D8LN68_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN68_ECTSI) HSP 1 Score: 475 bits (1223), Expect = 4.870e-158 Identity = 344/458 (75.11%), Postives = 360/458 (78.60%), Query Frame = 1
Query: 1 KDTDLSFTYKDPDGDDIVFDKDSELKLALRLCPGSLEISAAGKENKPANKLDSEEKIYKIAARNLREYNGVPSMTPPKLVKTLAFLKLHPHRLVKQGLAPKVLLARMKAEAANNAKLSKVPLGDGKNNEDLAESAAAGMELMSVEDDKKEWDDGFVSVEPDASATAAPIAAETPIPGNDSEEENNDAAPAVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVNGKDLRAMLQAERKITHKRHGRDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHPFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHMVD----------------------DHEAPGGGCRGRRGGPLFHPAHQHYAEVFDEDEGGHPGFHPHHGPPARWMAIRRRYGGGD-------------GQQQRRDHYWG 1269
KDTDLSFTYKDPDGDDIVFDKDSEL LA+RLCPGSLEISAAGKENKPANK D E ++YKIAARNLREYNGVPSMTP KLVKTLAFL+L+P RLVKQGLAPKVLLARMKAEAANNAK+SKVPLGDGKNNEDLAES AAGMELMSVEDDKKEW+DGFVSVEP A+T PGND+EE+N+ AP VKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVNGKDLRAMLQAE+K+ HKR G D XXXXXXXXXXXXXXXXXXXXXXXX HPFAXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXX XXXX + GGPLFHPAHQHYAEVFDEDEGGHPGFHPHHGPP RWMAIRR +GGG GQQQRRD+YWG
Sbjct: 51 KDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPGSLEISAAGKENKPANKPDPEARLYKIAARNLREYNGVPSMTPLKLVKTLAFLELNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGKNNEDLAESVAAGMELMSVEDDKKEWNDGFVSVEP----------ADTSSPGNDNEEKNDAVAPEVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVNGKDLRAMLQAEKKVAHKRRGHDXXXXXXXXXXXXXXXXXXXXXXXXXMAGRP--HPFAXXXXXXXXXXXXXXXXXXXXXXXXXXXRHGAPHXXXXXXXXXXXXXXXGAPHXXXXXPPMKRMMXXXXXXXXXXXXXXXXXEXXXXXXXXXXXXXXGGPLFHPAHQHYAEVFDEDEGGHPGFHPHHGPP-RWMAIRRAHGGGGYGGGYVGVFGGGVGQQQRRDYYWG 495
BLAST of mRNA_E-fasciculatus_F_contig1339.2539.1 vs. uniprot
Match: A0A6H5KB69_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB69_9PHAE) HSP 1 Score: 443 bits (1139), Expect = 7.290e-145 Identity = 315/472 (66.74%), Postives = 331/472 (70.13%), Query Frame = 1
Query: 1 KDTDLSFTYKDPDGDDIVFDKDSELKLALRLCPGSLEISAAGKENKPANKLDSEEKIYKIAARNLREYNGVPSMTPPKLVKTLAFLKLHPHRLVKQGLAPKVLLARMKAEAANNAKLSKVPLGDGKNNEDLAESAAAGMELMSVEDDKKEWDDGFVSVEPDASATAAPIAAETPIPGNDSEEENNDAAPAVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVNGKDLRAMLQAERKITHKRHGRDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHPFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHMVDDHEAPGGG-------------------CRG------------------------------------------RRGGPLFHPAHQHYAEVFDEDEGGHPGFHPHHGPPARWMAIRRRYGGG 1233
KDTDLSFTYKDPDGDDIVFDKDSEL LA+RLCP SLEISAAGKENKP NK D E ++YKIAARNLREYNGVPSMT PKL+KTLAFLKL+P RLVKQGLAPK LLARMKAEAANN K+SKV LGDG+NNEDLAES AAGMELMSVEDDKKE ++GFVS +PDASA A PI A+T P ND+EEEN+DAAP VKKNLIH AFIAGGIQLRPREVRPLLVALDVRP RLAKLGLVNGK LRAMLQAE K HKRHG DN XXX HPFA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + A GGG RG RRGGPLFHPAHQHY EVFDED GGHPGF P+HGPP RWMAIRR +GGG
Sbjct: 51 KDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPDSLEISAAGKENKPDNKPDPEGRLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPRRLVKQGLAPKNLLARMKAEAANNMKVSKVTLGDGENNEDLAESVAAGMELMSVEDDKKECNNGFVSAKPDASAAAVPITAKTSSPDNDNEEENDDAAPEVKKNLIHTAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVNGKYLRAMLQAETKAAHKRHGHDNNNDDTAALHHRRXXXRDYHRQQHRMTSRP--HPFAPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPSAHQEVGDAM--FAARGGGRHXXXXXXXXXXXXXMKRTMRGGRPQRFAPPRPSRSXXXXXXXPXXXXXXXXXXXXXXXXXXVDRRGGPLFHPAHQHYTEVFDEDGGGHPGFRPYHGPP-RWMAIRRAHGGG 517
BLAST of mRNA_E-fasciculatus_F_contig1339.2539.1 vs. uniprot
Match: D8LN66_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN66_ECTSI) HSP 1 Score: 405 bits (1041), Expect = 1.240e-131 Identity = 212/253 (83.79%), Postives = 225/253 (88.93%), Query Frame = 1
Query: 1 KDTDLSFTYKDPDGDDIVFDKDSELKLALRLCPGSLEISAAGKENKPANKLDSEEKIYKIAARNLREYNGVPSMTPPKLVKTLAFLKLHPHRLVKQGLAPKVLLARMKAEAANNAKLSKVPLGDGKNNEDLAESAAAGMELMSVEDDKKEWDDGFVSVEPDASATAAPIAAETPIPGNDSEEENNDAAPAVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVNGKDLRAMLQAERKITHKRHG 759
KDTDLSFTYKDPDGDDIVFDKDSELKLA+RLCPGSLEISAAGKE K A DSE ++YKIAARNLREYNGVPSMTPPKLVKTLAFLKL+P RLVKQGLAPK LL RMKAEAANNAK+SKVPLGDGKNNEDLAES AAGMELMS+EDDKKEW+DGFVSVEP A+T P ND+EE+N+ AP VKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLV+GKDLRAMLQAE+K HKRHG
Sbjct: 67 KDTDLSFTYKDPDGDDIVFDKDSELKLAMRLCPGSLEISAAGKEKKAAEMPDSEARLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKNLLPRMKAEAANNAKVSKVPLGDGKNNEDLAESVAAGMELMSLEDDKKEWNDGFVSVEP----------ADTSSPDNDNEEKNDAVAPEVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDLRAMLQAEKKTAHKRHG 309
BLAST of mRNA_E-fasciculatus_F_contig1339.2539.1 vs. uniprot
Match: A0A6H5KAY7_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY7_9PHAE) HSP 1 Score: 398 bits (1023), Expect = 7.010e-129 Identity = 212/253 (83.79%), Postives = 221/253 (87.35%), Query Frame = 1
Query: 1 KDTDLSFTYKDPDGDDIVFDKDSELKLALRLCPGSLEISAAGKENKPANKLDSEEKIYKIAARNLREYNGVPSMTPPKLVKTLAFLKLHPHRLVKQGLAPKVLLARMKAEAANNAKLSKVPLGDGKNNEDLAESAAAGMELMSVEDDKKEWDDGFVSVEPDASATAAPIAAETPIPGNDSEEENNDAAPAVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVNGKDLRAMLQAERKITHKRHG 759
KDTDLSFTYKDPDGDDIVFDKDSEL LALRLCPGSLEISAAGKENK DSEE +YKIAARNLREYNGVPSMTPPKLVKTLAFLKL+P RLVKQGLAPK+LLARMKAE ANNAKLSKV LGDGKNNEDLAE AAGME MSVEDDKKEW+DGFVSVEP AET N +EEEN+DAAP VK+NLIHKAFIAGGIQLRPREVRPLLVALDVRP RLAKLGLV+GKDLRAMLQAE+K HKRHG
Sbjct: 78 KDTDLSFTYKDPDGDDIVFDKDSELNLALRLCPGSLEISAAGKENKATKMPDSEETLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKMLLARMKAETANNAKLSKVRLGDGKNNEDLAEWVAAGMEFMSVEDDKKEWNDGFVSVEP----------AETSSSDNGNEEENDDAAPEVKQNLIHKAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVDGKDLRAMLQAEKKAAHKRHG 320
BLAST of mRNA_E-fasciculatus_F_contig1339.2539.1 vs. uniprot
Match: A0A6H5JPU3_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPU3_9PHAE) HSP 1 Score: 397 bits (1021), Expect = 1.490e-128 Identity = 212/252 (84.13%), Postives = 222/252 (88.10%), Query Frame = 1
Query: 4 DTDLSFTYKDPDGDDIVFDKDSELKLALRLCPGSLEISAAGKENKPANKLDSEEKIYKIAARNLREYNGVPSMTPPKLVKTLAFLKLHPHRLVKQGLAPKVLLARMKAEAANNAKLSKVPLGDGKNNEDLAESAAAGMELMSVEDDKKEWDDGFVSVEPDASATAAPIAAETPIPGNDSEEENNDAAPAVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVNGKDLRAMLQAERKITHKRHG 759
DTDLSFTYKDPDGDDIVFDK+SEL+LALRLCPGSLEISAAGKENK DSEEK+YKIAARNLREYNGVPSMTPPKLVKTLAFLKL+P RLVKQGLAPKVLLARMKAEAANNAK+SKVPLGDGKNNEDLAES AAGMELMSVED KKEW+DGFVSVEP AE P ND+EE+N DAAP KKNLIHKAFIAGGIQLRPREVRPLLVALDV P RLAKLGLV GKDLRAML+AE+K HKRHG
Sbjct: 70 DTDLSFTYKDPDGDDIVFDKESELQLALRLCPGSLEISAAGKENKATRMPDSEEKLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGKNNEDLAESVAAGMELMSVEDGKKEWNDGFVSVEP----------AEISFPANDNEEKN-DAAPEAKKNLIHKAFIAGGIQLRPREVRPLLVALDVLPYRLAKLGLVGGKDLRAMLRAEKKTAHKRHG 310
BLAST of mRNA_E-fasciculatus_F_contig1339.2539.1 vs. uniprot
Match: D8LN82_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN82_ECTSI) HSP 1 Score: 350 bits (898), Expect = 5.280e-112 Identity = 186/221 (84.16%), Postives = 198/221 (89.59%), Query Frame = 1
Query: 1 KDTDLSFTYKDPDGDDIVFDKDSELKLALRLCPGSLEISAAGKENKPANKLDSEEKIYKIAARNLREYNGVPSMTPPKLVKTLAFLKLHPHRLVKQGLAPKVLLARMKAEAANNAKLSKVPLGDGKNNEDLAESAAAGMELMSVEDDKKEWDDGFVSVEPDASATAAPIAAETPIPGNDSEEENNDAAPAVKKNLIHKAFIAGGIQLRPREVRPLLVALDV 663
KDTDLSFTYKDPDGDDIVFDKDSELKLA+RLCP SLEISAA KE+KPANK D E ++YKIAARNLREYNGVPSMTPPKL+KTLAFLKL+P RLVKQGLAPKVLLARMKAEAANNAK+SKVPLGDGKNNEDLA+S AAGMELMSVED KKEW+DGFVS E DA A AAPI AET P ND EEEN+DAAP VKKNLIHKAFIAGGIQLRPRE L V++ V
Sbjct: 66 KDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISAALKESKPANKPDPEARLYKIAARNLREYNGVPSMTPPKLIKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGKNNEDLADSVAAGMELMSVED-KKEWNDGFVSAESDAPAAAAPITAETSSPDNDKEEENDDAAPEVKKNLIHKAFIAGGIQLRPREGLLLGVSIFV 285
BLAST of mRNA_E-fasciculatus_F_contig1339.2539.1 vs. uniprot
Match: A0A6H5K3J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J2_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 1.400e-12 Identity = 64/174 (36.78%), Postives = 79/174 (45.40%), Query Frame = 1
Query: 133 NKPANK--LDSEEKIYKIAARNLREYNGVPSMTPPKLVKTLAFLKLHPHRLVKQGLAPKVLLARMKAEAANNAKLSKVPLGDGKNNEDLAESAAAGMELMSVEDDKKEWDDGFVSVEPDASATAAPIAAETPIPGNDSEEENNDAAPAVKKNLIHKAFIAGGIQLRPREVRPLL 648
NKP+ K ++ +YK AARNL EY+GVPSMT L KT+ L+L P RLV QGLAPK LL + ++A E + V DD +E D AT I ET K+ IH F+A G+QLRPRE RPLL
Sbjct: 37 NKPSCKRAVEPNPLLYKAAARNLCEYHGVPSMTAGGLEKTMVLLQLRPGRLVAQGLAPKQLL---EGKSAAGDAXXXXXXXXXXXXXXXXEVDPEQADNNQVSDDSNTNSRDGTDIEHDHVATQDSIDIET----------------GASKHPIHAVFVAAGVQLRPRETRPLL 191
BLAST of mRNA_E-fasciculatus_F_contig1339.2539.1 vs. uniprot
Match: A0A6H5JCG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG1_9PHAE) HSP 1 Score: 79.0 bits (193), Expect = 8.970e-12 Identity = 56/166 (33.73%), Postives = 76/166 (45.78%), Query Frame = 1
Query: 169 IYKIAARNLREYNGVPSMTPPKLVKTLAFLKLHPHRLVKQGLAPKVLLARMKAEAANNAKLSKVPLGDGKNNEDLAESAAAGMELMSVEDDKKEWDDGFVSVEPDASATAAPIAAETPIPGNDSEEENNDAAPAV------KKNLIHKAFIAGGIQLRPREVRPLL 648
++K AARNLREY+GVPS+TP L T+ L+L P RLV QGLAPK+LL G V+ D + GF + E A+ + + G D+ +N ++ K+ I F+A G+QLRPRE RPLL
Sbjct: 41 MFKAAARNLREYHGVPSITPGGLETTMVLLELRPARLVAQGLAPKILLK--------------------------------GNSTAGVDADSTDGSGGFEAEEEQANNQFSHDLSSNSSDGGDTGNDNIVTQNSIGFEARASKHPIQAVFVAVGVQLRPRETRPLL 174
BLAST of mRNA_E-fasciculatus_F_contig1339.2539.1 vs. uniprot
Match: A0A6H5KI70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI70_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 2.640e-9 Identity = 37/61 (60.66%), Postives = 43/61 (70.49%), Query Frame = 1
Query: 133 NKPANKLDSEEK--IYKIAARNLREYNGVPSMTPPKLVKTLAFLKLHPHRLVKQGLAPKVL 309
NKP+ KL E +YK AARNLREY+GVPSMT L KT+ L+L P RLV QGLAPK +
Sbjct: 39 NKPSCKLTGESNPLLYKAAARNLREYHGVPSMTAGGLEKTMVLLQLRPGRLVAQGLAPKXI 99 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1339.2539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1339.2539.1 >prot_E-fasciculatus_F_contig1339.2539.1 ID=prot_E-fasciculatus_F_contig1339.2539.1|Name=mRNA_E-fasciculatus_F_contig1339.2539.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=351bp MTPPKLVKTLAFLKLHPHRLVKQGLAPKVLLARMKAEAANNAKLSKVPLGback to top mRNA from alignment at E-fasciculatus_F_contig1339:2..2898+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1339.2539.1 ID=mRNA_E-fasciculatus_F_contig1339.2539.1|Name=mRNA_E-fasciculatus_F_contig1339.2539.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2897bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1339:2..2898+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1339:2..2898+ >mRNA_E-fasciculatus_F_contig1339.2539.1 ID=mRNA_E-fasciculatus_F_contig1339.2539.1|Name=mRNA_E-fasciculatus_F_contig1339.2539.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2106bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1339:2..2898+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |