mRNA_E-fasciculatus_F_contig13385.2537.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13385.2537.1
Unique NamemRNA_E-fasciculatus_F_contig13385.2537.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13385.2537.1 vs. uniprot
Match: D7FYV2_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV2_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 3.900e-65
Identity = 130/141 (92.20%), Postives = 131/141 (92.91%), Query Frame = 1 
Query:    1 TMLEHLPNDDDDWDEDDTFDGSSIFSYGSTGSATTNGGSGGRLPSSPSTLDATEXXXXXXXXXELRGRWGNDGVVVGGGEKQDAKREMVGPTGDVVHVTDILKGWRDDEAPRTSSTSGAIGSGHFNASGGGGRRLGSGGTS 423
            TMLEHLPNDDDDWDE  TFD SSIFSYGSTGSATTN GSGGRLPSSPSTLDATEXXXXXXXXXEL+GRWGNDGVVVGGGEKQDAKREMVGPTGDVVHVTDILKGWRDDEAPRTSS SG  GSGHF  SGGGGRRLGSG TS
Sbjct: 1566 TMLEHLPNDDDDWDEXXTFDDSSIFSYGSTGSATTNXGSGGRLPSSPSTLDATEXXXXXXXXXELQGRWGNDGVVVGGGEKQDAKREMVGPTGDVVHVTDILKGWRDDEAPRTSSMSGTTGSGHFITSGGGGRRLGSGCTS 1706
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BLAST of mRNA_E-fasciculatus_F_contig13385.2537.1 vs. uniprot
Match: A0A6H5KJE7_9PHAE (DENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJE7_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 1.850e-29
Identity = 82/129 (63.57%), Postives = 83/129 (64.34%), Query Frame = 1 
Query:    1 TMLEHLPNDDDDWDE--------------------------------------------DDTFDGSSIFSYGSTGSATTNGGSGGRLPSSPSTLDATEXXXXXXXXXELRGRWGNDGVVVGGGEKQDAK 255
            TMLEHLPNDDDDWDE                                            DDTFD SSIFSYGSTGSATTNGGSGG+LPSSPSTLDATE XXXXXXXXELRGRWGNDGVVVGGGEKQDAK
Sbjct: 1197 TMLEHLPNDDDDWDEVGGRRKSWVFGLGSIRRKACCVHGVACLVLVSSRREPAVWIPGMDDTFDDSSIFSYGSTGSATTNGGSGGQLPSSPSTLDATEQXXXXXXXXELRGRWGNDGVVVGGGEKQDAK 1325
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13385.2537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYV2_ECTSI3.900e-6592.20PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KJE7_9PHAE1.850e-2963.57DENN domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13385contigE-fasciculatus_F_contig13385:2504..3524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size438
Cds size435
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13385.2537.1prot_E-fasciculatus_F_contig13385.2537.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13385 2507..3524 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927838.8169498-UTR-E-fasciculatus_F_contig13385:2503..25061622927838.8169498-UTR-E-fasciculatus_F_contig13385:2503..2506Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13385 2504..2506 +
1695995717.2930624-UTR-E-fasciculatus_F_contig13385:2503..25061695995717.2930624-UTR-E-fasciculatus_F_contig13385:2503..2506Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13385 2504..2506 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927838.8646066-CDS-E-fasciculatus_F_contig13385:2506..25481622927838.8646066-CDS-E-fasciculatus_F_contig13385:2506..2548Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13385 2507..2548 +
1695995717.3031423-CDS-E-fasciculatus_F_contig13385:2506..25481695995717.3031423-CDS-E-fasciculatus_F_contig13385:2506..2548Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13385 2507..2548 +
1622927838.877117-CDS-E-fasciculatus_F_contig13385:2815..30251622927838.877117-CDS-E-fasciculatus_F_contig13385:2815..3025Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13385 2816..3025 +
1695995717.3129663-CDS-E-fasciculatus_F_contig13385:2815..30251695995717.3129663-CDS-E-fasciculatus_F_contig13385:2815..3025Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13385 2816..3025 +
1622927838.8891532-CDS-E-fasciculatus_F_contig13385:3341..35241622927838.8891532-CDS-E-fasciculatus_F_contig13385:3341..3524Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13385 3342..3524 +
1695995717.3218946-CDS-E-fasciculatus_F_contig13385:3341..35241695995717.3218946-CDS-E-fasciculatus_F_contig13385:3341..3524Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13385 3342..3524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13385.2537.1

>prot_E-fasciculatus_F_contig13385.2537.1 ID=prot_E-fasciculatus_F_contig13385.2537.1|Name=mRNA_E-fasciculatus_F_contig13385.2537.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=145bp
MLEHLPNDDDDWDEDDTFDGSSIFSYGSTGSATTNGGSGGRLPSSPSTLD
ATEQSDDDEDDEELRGRWGNDGVVVGGGEKQDAKREMVGPTGDVVHVTDI
LKGWRDDEAPRTSSTSGAIGSGHFNASGGGGRRLGSGGTSRSGRG
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mRNA from alignment at E-fasciculatus_F_contig13385:2504..3524+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13385.2537.1 ID=mRNA_E-fasciculatus_F_contig13385.2537.1|Name=mRNA_E-fasciculatus_F_contig13385.2537.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1021bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13385:2504..3524+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACCATGCTGGAGCACTTGCCTAACGACGACGACGACTGGGACGAGGTGGG
CGGGCGGAGCGTTGGTCTTGGGCGTGGGTAGTATACGTCGGTAGGCGTGT
TGCGCTACCTACCTTGTTATGGTGTCTTCGAGAAGATAGCCAGCCGTATA
CAAAGTCGAAAGATGCGAGATAAGTTTTTGACATACTTGTCATCAGAACA
GCAACAGAGGGAAGGAACTAACTGGCAATGAGAGATGATGTTTTTTCTTG
CCTGATTTTCTGGTTTTGCTTTGCTTGCTCCGACACGTGCTGTCGCTCGT
GTGTACATTCAGGACGATACGTTCGACGGCAGCAGCATTTTCAGCTACGG
TAGTACGGGGAGTGCTACCACGAACGGCGGCAGCGGCGGCCGGCTGCCGT
CCTCGCCTTCTACTCTCGATGCGACGGAGCAGTCGGACGACGACGAGGAC
GATGAGGAGTTGCGGGGCCGCTGGGGGAACGACGGAGTCGTGGTCGGCGG
AGGGGAGAAGCAGGATGCCAAGGTCGGCCTACGCAAGGGTTGATTGGTTG
ATTTGTTTTTGTCCCAGAGGGGACTCGGGAGTTTCTAGAGCGAGGATGTC
CCAGGCAAAATTGTGATACACGCACACCTTGCGGGCACTGCTTGCGTAGG
AGGAGGGAAGTTGTTGTCTGTCGGGCGTATTTGTTGTTGGTCTTGATCGC
GACAATGTTTTTGGCAATACGTAGACGACCAGGGCACTTGCGGGACCACC
GGGCCTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCCCGGCCTTTGTTGCCGCAGCGCGAGATGGTC
GGTCCCACGGGCGACGTGGTCCACGTGACGGACATCCTCAAGGGCTGGCG
AGACGACGAGGCGCCGCGGACGTCGTCCACCTCCGGAGCGATCGGGAGCG
GCCACTTCAACGCGAGCGGCGGGGGGGGGCGTCGGCTCGGGAGCGGGGGA
ACGTCGCGGAGCGGCAGGGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13385:2504..3524+

>mRNA_E-fasciculatus_F_contig13385.2537.1 ID=mRNA_E-fasciculatus_F_contig13385.2537.1|Name=mRNA_E-fasciculatus_F_contig13385.2537.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=870bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13385:2504..3524+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTGGAGCACTTGCCTAACGACGACGACGACTGGGACGAGATGCTGGA
GCACTTGCCTAACGACGACGACGACTGGGACGAGGACGATACGTTCGACG
GCAGCAGCATTTTCAGCTACGGTAGTACGGGGAGTGCTACCACGAACGGC
GGCAGCGGCGGCCGGCTGCCGTCCTCGCCTTCTACTCTCGATGCGACGGA
GCAGTCGGACGACGACGAGGACGATGAGGAGTTGCGGGGCCGCTGGGGGA
ACGACGGAGTCGTGGTCGGCGGAGGGGAGAAGCAGGATGCCAAGGACGAT
ACGTTCGACGGCAGCAGCATTTTCAGCTACGGTAGTACGGGGAGTGCTAC
CACGAACGGCGGCAGCGGCGGCCGGCTGCCGTCCTCGCCTTCTACTCTCG
ATGCGACGGAGCAGTCGGACGACGACGAGGACGATGAGGAGTTGCGGGGC
CGCTGGGGGAACGACGGAGTCGTGGTCGGCGGAGGGGAGAAGCAGGATGC
CAAGCGCGAGATGGTCGGTCCCACGGGCGACGTGGTCCACGTGACGGACA
TCCTCAAGGGCTGGCGAGACGACGAGGCGCCGCGGACGTCGTCCACCTCC
GGAGCGATCGGGAGCGGCCACTTCAACGCGAGCGGCGGGGGGGGGCGTCG
GCTCGGGAGCGGGGGAACGTCGCGGAGCGGCAGGGGCCGCGAGATGGTCG
GTCCCACGGGCGACGTGGTCCACGTGACGGACATCCTCAAGGGCTGGCGA
GACGACGAGGCGCCGCGGACGTCGTCCACCTCCGGAGCGATCGGGAGCGG
CCACTTCAACGCGAGCGGCGGGGGGGGGCGTCGGCTCGGGAGCGGGGGAA
CGTCGCGGAGCGGCAGGGGC
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