mRNA_E-fasciculatus_F_contig13383.2532.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13383.2532.1
Unique NamemRNA_E-fasciculatus_F_contig13383.2532.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13383.2532.1 vs. uniprot
Match: D8LI99_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI99_ECTSI)

HSP 1 Score: 296 bits (758), Expect = 1.480e-94
Identity = 143/149 (95.97%), Postives = 147/149 (98.66%), Query Frame = 1 
Query:  232 MGAESETMILCKVAMDSPRESMQLLLTCLSDIYHLRPAWPVDDRRDKVLHTLVMTLLRVRDEVQGKRISMCFEDPHVGLIPVIKAQMVERSRYNNFNVTSQSESVLSRYSKLWHQAYKGVPSVRDWVDNNEEAQLIIQGDRGRGARGRG 678
            MGAESETMILCKVAMDSP ESMQLLLTCLSDIYHLRPAWPVDDRRDKVLH+LVMTLLRVRDEVQGKRIS+CFEDPH GLIPVIKAQMVERSRYNNFNVT+QSESVLSRYSKLWHQAYKGVP+VRDWVDNNEEAQLIIQGDRGRGARGRG
Sbjct:    1 MGAESETMILCKVAMDSPHESMQLLLTCLSDIYHLRPAWPVDDRRDKVLHSLVMTLLRVRDEVQGKRISICFEDPHFGLIPVIKAQMVERSRYNNFNVTNQSESVLSRYSKLWHQAYKGVPAVRDWVDNNEEAQLIIQGDRGRGARGRG 149
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BLAST of mRNA_E-fasciculatus_F_contig13383.2532.1 vs. uniprot
Match: D8LIA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIA0_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 2.560e-21
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 1 
Query:    1 KAWNDLYHMGYRSDLTAGMGYGDEVYNLAPAAXXXXXXXXXTANDAQRRPLLPELTTKALT 183
            +AWNDLYHMGYRSDLTAGMGYGDEVYNLAPAAXXXXXXXXX ANDAQRRPLLPELTTKALT
Sbjct:  174 QAWNDLYHMGYRSDLTAGMGYGDEVYNLAPAAXXXXXXXXX-ANDAQRRPLLPELTTKALT 233
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13383.2532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI99_ECTSI1.480e-9495.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LIA0_ECTSI2.560e-2196.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13383contigE-fasciculatus_F_contig13383:459..3510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_003710.1
Exons5
Model size831
Cds size807
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13383.2532.1prot_E-fasciculatus_F_contig13383.2532.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13383 459..3486 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927838.1524284-CDS-E-fasciculatus_F_contig13383:458..6741622927838.1524284-CDS-E-fasciculatus_F_contig13383:458..674Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13383 459..674 -
1695995717.2165291-CDS-E-fasciculatus_F_contig13383:458..6741695995717.2165291-CDS-E-fasciculatus_F_contig13383:458..674Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13383 459..674 -
1622927838.1715987-CDS-E-fasciculatus_F_contig13383:1177..12941622927838.1715987-CDS-E-fasciculatus_F_contig13383:1177..1294Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13383 1178..1294 -
1695995717.227778-CDS-E-fasciculatus_F_contig13383:1177..12941695995717.227778-CDS-E-fasciculatus_F_contig13383:1177..1294Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13383 1178..1294 -
1622927838.1831477-CDS-E-fasciculatus_F_contig13383:1975..21301622927838.1831477-CDS-E-fasciculatus_F_contig13383:1975..2130Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13383 1976..2130 -
1695995717.236438-CDS-E-fasciculatus_F_contig13383:1975..21301695995717.236438-CDS-E-fasciculatus_F_contig13383:1975..2130Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13383 1976..2130 -
1622927838.1957657-CDS-E-fasciculatus_F_contig13383:2683..28411622927838.1957657-CDS-E-fasciculatus_F_contig13383:2683..2841Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13383 2684..2841 -
1695995717.2452343-CDS-E-fasciculatus_F_contig13383:2683..28411695995717.2452343-CDS-E-fasciculatus_F_contig13383:2683..2841Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13383 2684..2841 -
1622927838.2056906-CDS-E-fasciculatus_F_contig13383:3325..34861622927838.2056906-CDS-E-fasciculatus_F_contig13383:3325..3486Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13383 3326..3486 -
1695995717.254051-CDS-E-fasciculatus_F_contig13383:3325..34861695995717.254051-CDS-E-fasciculatus_F_contig13383:3325..3486Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13383 3326..3486 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927838.2175016-UTR-E-fasciculatus_F_contig13383:3486..35101622927838.2175016-UTR-E-fasciculatus_F_contig13383:3486..3510Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13383 3487..3510 -
1695995717.2696345-UTR-E-fasciculatus_F_contig13383:3486..35101695995717.2696345-UTR-E-fasciculatus_F_contig13383:3486..3510Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13383 3487..3510 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13383.2532.1

>prot_E-fasciculatus_F_contig13383.2532.1 ID=prot_E-fasciculatus_F_contig13383.2532.1|Name=mRNA_E-fasciculatus_F_contig13383.2532.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=269bp
MGYRSDLTAGMGYGDEVYNLAPAAAAAAAAAAATANDAQRRPLLPELTTK
ALTCTEFYLAASHLSSGVSMGAESETMILCKVAMDSPRESMQLLLTCLSD
IYHLRPAWPVDDRRDKVLHTLVMTLLRVRDEVQGKRISMCFEDPHVGLIP
VIKAQMVERSRYNNFNVTSQSESVLSRYSKLWHQAYKGVPSVRDWVDNNE
EAQLIIQGDRGRGARGRGGGSSGGSSSNSTNRGGGARGGSGGGGGGGGSG
GVRRGGEEEDSGDESDSR*
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mRNA from alignment at E-fasciculatus_F_contig13383:459..3510-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13383.2532.1 ID=mRNA_E-fasciculatus_F_contig13383.2532.1|Name=mRNA_E-fasciculatus_F_contig13383.2532.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3052bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13383:459..3510- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGCGTGGAACGACCTGTACCACATGGGCTACCGCTCCGACCTGACGGC
CGGCATGGGCTACGGCGATGAGGTCTACAACTTGGCGCCGGCCGCGGCTG
CTGCTGCCGCCGCGGCTGCTGCTACCGCGAATGACGCGCAGCGGCGGCCG
CTCCTACCCGAGCTCACGACGAAGGCGCTCACCTGGTACGGGTTGTTATG
GTGGTGGTGGTAGTGGTAGTGGCAGTTCATACTTCGAAGTAGTTGTCTGG
GCGCTTTGCCTTGTGTTGTTTTTGTTGTTGTTTTTGTTTTGGGGTATACG
GCGGTTTATTGTGTGGTACGGTGGCGAGGGCGGCAAGTAGTACTTGGAAG
TAGTTGTCTTGTCTGGGCCCTTTGCCTTGTTTTGTGTTGCTGCTATTTTG
GCGGTGGCGGTGGCGTTGGTGGTTGTTTGTTGTTGTTGTTGTTTGTTGCT
GTTGTCGCATGATACGGGGCGGCGGCTTTGTGTGTGATGCCTCGCCACGC
GCCCTACCCACGACCAGAAGTCGTGACGGCAACAACAGCAGCGGCTTATT
CATTCCTGTGCCCGCCTGCCCTCCTCCCCCCCCGCGCGCCGATGGCTTCC
GTGTTCTCTCGCAAACCTGTCCGTCGGCAACCGTAAAACGCCGCACTCAA
AAAAATAAATGAAAAATAGCACGGAATTCTACCTGGCGGCGTCTCACCTC
TCGAGCGGGGTGTCGATGGGAGCAGAGTCGGAGACGATGATCCTGTGCAA
GGTGGCGATGGACAGCCCGCGCGAGTCGATGCAGCTGCTCCTGACGTGCC
TCTCGGACATCTACCATTTACGACCCGGTGAGGATAAGGAGGGAGGAAGG
AGGGAAGAAAATGTGAAAAGAAGGAGAAGCACAGAGGTGGATGATGCCGG
AGTGTTTTGTCATCGCCGTTGCTGCTGCTTCTGCTCTTTGAAGTTGTTGC
TGTTGTTTGCCGTGTTATGTCTCCGAGTTGTAGTGTACCGATGTTGGTTC
GTCGGGTATCGCATCGCTCGCTCTTGCGGCATCACCGCCGTGCCATCCTT
ATCCTTTTGCTGCCGACTCATTTTTTTGTCCGTGTGGTCCGATACGACAC
GGCAACACCTATCCCCGCCCGCGCCCGCCTCGTACCTCCCTTATCATTCT
TATCATCATTTTATCGGATTGATGGTGGCGGACAGGCACGATTCCACGCA
AGGCAAGACCACGCACAGACCATGCCACCTCTATACGCGTTATAGCGCGT
CACGTCAATCTCGGGAGTAATCCATACATCGTTCGTCGGTGTTTTACAAT
TTACTGTGTTTCATATTTCTCTTATCTCTTGTCGTGCCTCCGTCCTCCGG
TTTTGGCTGCGTTTTCTTGTTGTGGTACAGCGTGGCCGGTAGACGACCGG
AGAGACAAGGTGCTGCACACCTTGGTGATGACCCTCCTGCGCGTCCGCGA
CGAGGTCCAGGGGAAGAGGATCTCTATGTGCTTCGAGGACCCGCACGTTG
GCCTCATACCTGTCATCAAGGCGCAAATGGTTGAGGTACGTGCTCGGCGG
GGGGGGGTGGGGGGTACTCATGTTTTGCGTGCCTTTGTTGTTAGAGTATT
GACCCAGCGCGGGGGAGGGGACAGGTGTACCCATAGCCCTGTATACCGTA
GTCGTTAGACCATTGACCTCGCATCCCTACAAAGCCGGGACGGAGCACGC
CGGGTTGTTCTCACGAGACCAGGCTCTCACATCACCAAGCGCGAAGCGCC
GTGATGTATTCGGCGAGTGTGCGCTGCATCCCCTTCTACGGGTGTTCGTC
GCATGTTTTGCATGCCTTAGTTGTTAGACCATTGACCCGAGGGGTTGGCC
GCGGCGTTGGTAGTCCGTTAGTGTTGCAGAGAGACCGCCACGGTTGCCTC
AGGTTGCCTCACTCAGAAGAGGCGATGGAGCTAAGGTGGTCCAGGACAGT
GTTTGTGTTTTATGTTCTTGCGCGCCACGTGCGGGGATGCTATCCTCATC
TTTTGTCGCTGTCGTATGCTTTTCGCGCTGCATGCCTCTGTTTGCAATTG
AAAGAAGTACAAGTAATTGGTACCGCTTGTCTCCTCGTCCAACACACCCT
GACGCCATTGTCACCCTGCTCTTCCTCCCTCTCCTGCTCCTGCTCCGCTT
CCCTTGCTTGGTCAAAACTTGGTCAAAACTTGGTCTTTATTGGTCAAAAC
TTGGTCCGCTCCTCAGCGCTCTCGGTACAACAACTTCAACGTCACCAGCC
AGTCCGAGAGCGTGCTCTCGCGCTACAGCAAGCTATGGCACCAGGCCTAC
AAAGGAGTCCCGTCAGTTCGCGACTGGGTAGACGTGAGTTGTCACTTTAT
TTTCTTCTTTTTTTCTTGTCGTGTGTACGTTAAATGTTACGGACGAATCG
TGTTGTCTCTCGTTTCTTTGTTGTATACTATACAGTCGGAGGCCCTCTAC
AAGGCGGCTATGCGCCTTATAAGACCGATTCACCCGCCCCTACAGAGCAC
CCGCCTTATAGAGGACCTACGACTGTATTAGGTCGTTCCCGCCCCTCGAT
ACTTCTCGCAGCTAGGGGTATGCTGCCGGTGCGCACCTCTATTGTTGGCA
ACTCGGAAAAGTATTATCGACGAAATCACTTCTAGGTGGCATGTAAATCT
TGAGCTTCTAAGTTCCGCTCACCGCTCACCGCACGGGTACAAAATGCTTG
TGTCTGTCTGTCTGTCTCAGCGGCAACGGGAATGACACGGAGCTCGTATC
TGCTGTNNNNNNNNNNCATGCCACAGCGTTCTGTTGCTTCTCGTTAATTT
TTTGGGGGCCCTCTCATCTTTCTCTTTCTCTCGCAGAACAACGAAGAAGC
CCAGCTCATCATCCAGGGAGACAGAGGCCGCGGCGCGCGTGGGCGGGGCG
GCGGAAGCAGCGGCGGAAGCAGCAGCAACAGCACCAATCGGGGTGGGGGT
GCCCGGGGGGGCAGCGGCGGCGGCGGCGGTGGCGGCGGTAGCGGCGGCGT
TCGTCGCGGTGGCGAGGAAGAAGACTCCGGGGACGAAAGCGACAGCAGGT
GA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13383:459..3510-

>mRNA_E-fasciculatus_F_contig13383.2532.1 ID=mRNA_E-fasciculatus_F_contig13383.2532.1|Name=mRNA_E-fasciculatus_F_contig13383.2532.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1614bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13383:459..3510- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGCTACCGCTCCGACCTGACGGCCGGCATGGGCTACGGCGATGAGGT
CTACAACTTGGCGCCGGCCGCGGCTGCTGCTGCCGCCGCGGCTGCTGCTA
CCGCGAATGACGCGCAGCGGCGGCCGCTCCTACCCGAGCTCACGACGAAG
GCGCTCACCTGATGGGCTACCGCTCCGACCTGACGGCCGGCATGGGCTAC
GGCGATGAGGTCTACAACTTGGCGCCGGCCGCGGCTGCTGCTGCCGCCGC
GGCTGCTGCTACCGCGAATGACGCGCAGCGGCGGCCGCTCCTACCCGAGC
TCACGACGAAGGCGCTCACCTGCACGGAATTCTACCTGGCGGCGTCTCAC
CTCTCGAGCGGGGTGTCGATGGGAGCAGAGTCGGAGACGATGATCCTGTG
CAAGGTGGCGATGGACAGCCCGCGCGAGTCGATGCAGCTGCTCCTGACGT
GCCTCTCGGACATCTACCATTTACGACCCGCACGGAATTCTACCTGGCGG
CGTCTCACCTCTCGAGCGGGGTGTCGATGGGAGCAGAGTCGGAGACGATG
ATCCTGTGCAAGGTGGCGATGGACAGCCCGCGCGAGTCGATGCAGCTGCT
CCTGACGTGCCTCTCGGACATCTACCATTTACGACCCGCGTGGCCGGTAG
ACGACCGGAGAGACAAGGTGCTGCACACCTTGGTGATGACCCTCCTGCGC
GTCCGCGACGAGGTCCAGGGGAAGAGGATCTCTATGTGCTTCGAGGACCC
GCACGTTGGCCTCATACCTGTCATCAAGGCGCAAATGGTTGAGCGTGGCC
GGTAGACGACCGGAGAGACAAGGTGCTGCACACCTTGGTGATGACCCTCC
TGCGCGTCCGCGACGAGGTCCAGGGGAAGAGGATCTCTATGTGCTTCGAG
GACCCGCACGTTGGCCTCATACCTGTCATCAAGGCGCAAATGGTTGAGCG
CTCTCGGTACAACAACTTCAACGTCACCAGCCAGTCCGAGAGCGTGCTCT
CGCGCTACAGCAAGCTATGGCACCAGGCCTACAAAGGAGTCCCGTCAGTT
CGCGACTGGGTAGACCGCTCTCGGTACAACAACTTCAACGTCACCAGCCA
GTCCGAGAGCGTGCTCTCGCGCTACAGCAAGCTATGGCACCAGGCCTACA
AAGGAGTCCCGTCAGTTCGCGACTGGGTAGACAACAACGAAGAAGCCCAG
CTCATCATCCAGGGAGACAGAGGCCGCGGCGCGCGTGGGCGGGGCGGCGG
AAGCAGCGGCGGAAGCAGCAGCAACAGCACCAATCGGGGTGGGGGTGCCC
GGGGGGGCAGCGGCGGCGGCGGCGGTGGCGGCGGTAGCGGCGGCGTTCGT
CGCGGTGGCGAGGAAGAAGACTCCGGGGACGAAAGCGACAGCAGGTGAAA
CAACGAAGAAGCCCAGCTCATCATCCAGGGAGACAGAGGCCGCGGCGCGC
GTGGGCGGGGCGGCGGAAGCAGCGGCGGAAGCAGCAGCAACAGCACCAAT
CGGGGTGGGGGTGCCCGGGGGGGCAGCGGCGGCGGCGGCGGTGGCGGCGG
TAGCGGCGGCGTTCGTCGCGGTGGCGAGGAAGAAGACTCCGGGGACGAAA
GCGACAGCAGGTGA
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