mRNA_E-fasciculatus_F_contig13382.2531.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig13382.2531.1 vs. uniprot
Match: D8LQ16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ16_ECTSI) HSP 1 Score: 427 bits (1097), Expect = 1.150e-145 Identity = 214/239 (89.54%), Postives = 216/239 (90.38%), Query Frame = 1
Query: 25 GRAQPHEDRCLLTAVERFDGRVLLRPEEGHQLMYCVRPKGETTPPSPGKEGSLGAVGGAARAGSDVGEGGFGEGSHTLGRVEVCWRTTTGESGSIRGGPVVFEAPDRPEVEVTVDGLPDVLKLGRVAECVATVRNRSNRPMTLQLQFRTDGMVGVYVHGQSFRNLGELSPGAFVRCPLQLLALVAGLHELRGCTVADMHTAQEFAQGKLRDILVEFPNEEDDEAVVVVGGRGDHPVPGL 741
G+A PH+DRCLLTAVERFDGRVLLRPEEGHQLMY VRPK ETTPP PGKEG L AV G ARAG D GEGGFGEGSHTLGRVEVCWRTTTGESGSIRGGPVVFEAPDRPEVEVTVDGLPDVLKLGRVAECVATVRNRSNRPMTLQLQFRTDGMVGVYVHGQSFRNLGEL PG FVRCPLQLLALVAGLHELRGCTVADMHTAQEFAQGKLRDILVEFPNEEDDE H VPGL
Sbjct: 307 GKAPPHDDRCLLTAVERFDGRVLLRPEEGHQLMYSVRPKEETTPPPPGKEGYLDAVRGDARAGGDAGEGGFGEGSHTLGRVEVCWRTTTGESGSIRGGPVVFEAPDRPEVEVTVDGLPDVLKLGRVAECVATVRNRSNRPMTLQLQFRTDGMVGVYVHGQSFRNLGELLPGTFVRCPLQLLALVAGLHELRGCTVADMHTAQEFAQGKLRDILVEFPNEEDDE----------HAVPGL 535
BLAST of mRNA_E-fasciculatus_F_contig13382.2531.1 vs. uniprot
Match: A0A6H5K843_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K843_9PHAE) HSP 1 Score: 215 bits (547), Expect = 3.570e-64 Identity = 105/124 (84.68%), Postives = 111/124 (89.52%), Query Frame = 1
Query: 4 GGGAGTGGRAQPHEDRCLLTAVERFDGRVLLRPEEGHQLMYCVRPKGETTPPSPGKEGSLGAVGGAARAGSDVGEGGFGEGSHTLGRVEVCWRTTTGESGSIRGGPVVFEAPDRPEVEVTVDGL 375
GGGAG G++ PH+DRCLLTAVERFDGRVLLRPEEGHQLMY VRP+ ETT P PG+EGSLGAVGGAARAG D GEGGFGEGSHTLGRVEVCWRTTTGESGSIRGGPVVFEAPDRPEVE G+
Sbjct: 301 GGGAGEEGKSPPHDDRCLLTAVERFDGRVLLRPEEGHQLMYSVRPREETTSPPPGREGSLGAVGGAARAGGDAGEGGFGEGSHTLGRVEVCWRTTTGESGSIRGGPVVFEAPDRPEVEGANSGV 424
BLAST of mRNA_E-fasciculatus_F_contig13382.2531.1 vs. uniprot
Match: A0A835ZFD5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFD5_9STRA) HSP 1 Score: 184 bits (466), Expect = 9.770e-52 Identity = 96/205 (46.83%), Postives = 127/205 (61.95%), Query Frame = 1
Query: 58 LTAVERFDGRVLLRPEEGHQLMYCVRPKGETTPPSPGKEGSLGAVGGAARAGSDVGEGGFGEGSHTLGRVEVCWRTTTGESGSIRGGPVVFEAPDRPEVEVTVDGLPDVLKLGRVAECVATVRNRSNRPMTLQLQFRTDGMVGVYVHGQSFRNLGELSPGAFVRCPLQLLALVAGLHELRGCTVADMHTAQEFAQGKLRDILVEF 672
++A+E FD R+LL P+E HQ +Y V K G LG G G+HTLG +E+ WRTT GESGS+ GP+V + + VEV ++GL +LG VA A V N S+R M LQLQFR++ M GVYVHG+SFRNLGE++P +RCP+Q L LV G+H++ GC + DM TAQE+ QGKL D+ VE+
Sbjct: 286 VSALECFDSRILLAPDETHQFVYRVT-----------KGGELG--------------GRLSRGTHTLGHIELSWRTTMGESGSVLSGPLVCDVQGKEGVEVILEGLSRAARLGEVAAATAVVTNVSDRSMHLQLQFRSEAMAGVYVHGRSFRNLGEVAPYQELRCPVQFLPLVGGVHQVLGCVIVDMQTAQEYPQGKLGDVFVEW 465
BLAST of mRNA_E-fasciculatus_F_contig13382.2531.1 vs. uniprot
Match: A0A7S3Y237_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y237_HETAK) HSP 1 Score: 120 bits (301), Expect = 6.560e-30 Identity = 61/141 (43.26%), Postives = 86/141 (60.99%), Query Frame = 1
Query: 256 LGRVEVCWRTTTGESGSIRGGPVVFEAPDRPEVEVTVDGLPDVLKLGRVAECVATVRNRSNRPMTLQLQFRTDGMVGVYVHGQSFRNLGELSPGAFVRCPLQLLALVAGLHELRGCTVADMHTAQEFAQGKLRDILVEFPN 678
LG++ + W T GE G I P+V++ P +VEV +GL + LG+ + + NR+ +PM LQ+QFR D MVGVY+ G+SFRNLG +SPG V L+ V GLH RG V ++ T QE+ QG + DI V+ P+
Sbjct: 46 LGQLNISWTTAMGERGRILSSPIVYKLPPTQDVEVQFEGLQKFV-LGQASPIKCKITNRTEKPMHLQIQFRLDAMVGVYIMGKSFRNLGLVSPGQTVVSEAHLMPTVGGLHPFRGVFVVNLDTYQEYDQGIVCDIFVDSPH 185
BLAST of mRNA_E-fasciculatus_F_contig13382.2531.1 vs. uniprot
Match: W7TGS3_9STRA (Uncharacterized protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TGS3_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 3.670e-19 Identity = 77/241 (31.95%), Postives = 114/241 (47.30%), Query Frame = 1
Query: 37 PHEDRCL--LTAVERFDGRVLLRPEEGHQLMYCVRPKGETTPPSPGKEGSLGAVGGAARAGSDVGEGGFGEGSHTLGRVEVCWRTTTGESGSIRGGPVVFE---APDRPEVEV------------------TVDGLPD--------VLKLGRVAECVATVRNRSNRPMTLQLQFRTDGMVGVYVHGQSFRNLGELSPGAFVRCPLQLLALVAGLHELRGCTVADMHTAQEFAQGKLRDILV 666
P E+R L V FD V L+PE+ Q +Y + + E T P ++G +A S V G+ LG++ V WRTT GESG++ V A P VE+ +VD P VL G+V T+ N +++ + LQ+QF D M GVY+ G+SF+N G++ L L+AGLH+++G T+ DM TAQE+ Q +L ++V
Sbjct: 321 PSEERESDPLDCVAAFDRHVYLQPEDVAQFLYRLSYRAEDTRGPPDQDGM--------QASSPVARTTLSTGT-PLGQLRVSWRTTLGESGTLLSPLVECSSAVASTAPPVELRLSRPLRALRREGDSETSSVDVKPAKDDQEGAAVLVQGQVYAAHCTLYNNTDKDIWLQVQFHLDAMQGVYITGKSFQNAGQVRSHGTQNLLFHFLPLMAGLHDVKGITILDMVTAQEYHQDRLCQVMV 552
BLAST of mRNA_E-fasciculatus_F_contig13382.2531.1 vs. uniprot
Match: A0A067BMW3_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BMW3_SAPPC) HSP 1 Score: 89.0 bits (219), Expect = 7.970e-17 Identity = 46/141 (32.62%), Postives = 79/141 (56.03%), Query Frame = 1
Query: 244 GSHTLGRVEVCWRTTTGESGSIRGGPVVFEAPDRPEVEVTVDGLPDVLKLGRVAECVATVRNRSNRPMTLQLQFRTDGMVGVYVHGQSFRNLGELSPGAFVRCPLQLLALVAGLHELRGCTVADMHTAQEFAQGKLRDILV 666
G+ LGR+EV W+++ GE+GS++ PV+ + E V++ L++G+ V+N RPM LQLQ R + M G+ S +N+G +S + ++LL L+AGL +++G + ++ T E+ Q K +LV
Sbjct: 238 GTLNLGRLEVAWKSSMGEAGSLQTQPVMRKVGSLKEASVSIVVPTQPLRVGQPFVATFVVQNNGTRPMNLQLQLRRELMTGIVCSALSHQNVGVVSTNGCTQLDVELLPLIAGLQQIQGVFIVELETLVEYPQEKTLHLLV 378
BLAST of mRNA_E-fasciculatus_F_contig13382.2531.1 vs. uniprot
Match: A0A8C2ZNK1_CYCLU (Trafficking protein particle complex subunit 13 n=2 Tax=Percomorphaceae TaxID=1489872 RepID=A0A8C2ZNK1_CYCLU) HSP 1 Score: 80.5 bits (197), Expect = 9.260e-14 Identity = 52/200 (26.00%), Postives = 92/200 (46.00%), Query Frame = 1
Query: 76 FDGRVLLRPEEGHQLMYCVRPKGETTPPSPGKEGSLGAVGGAARAGSDVGEGGFGEGSHTLGRVEVCWRTTTGESGSIRGGPVVFEAPDRPEVEVTVDGLPDVLKLGRVAECVATVRNRSNRPMTLQLQFRTDGMVGVYVHGQSFRNLGELSPGAFVRCPLQLLALVAGLHELRGCTVADMHTAQEFAQGKLRDILVEFP 675
F L+P + Q +YC++PK E A +AG +G +G++++ W+T GE G ++ + AP ++ ++++ +PD + L + + + N S R M L+L+ ++ G S R LG+LSPGAF+ PL LL+ V GL + G + D + + + + V P
Sbjct: 232 FGKMSYLQPTDTRQYLYCLKPKPEY----------------AEKAGVI-------KGVTVIGKLDIVWKTNLGERGRLQTSQLQRMAPGYGDIRLSLEMIPDTVNLEEPFDIICKITNCSERTMDLELEMCNTR--SIHWCGVSGRQLGKLSPGAFLSLPLTLLSSVQGLQSISGLRLTDTFLKRTYEYDDIAQVCVVCP 406
BLAST of mRNA_E-fasciculatus_F_contig13382.2531.1 vs. uniprot
Match: A0A6I9N6H0_9TELE (Trafficking protein particle complex subunit 13 n=6 Tax=Notothenioidei TaxID=8205 RepID=A0A6I9N6H0_9TELE) HSP 1 Score: 80.1 bits (196), Expect = 1.230e-13 Identity = 52/200 (26.00%), Postives = 92/200 (46.00%), Query Frame = 1
Query: 76 FDGRVLLRPEEGHQLMYCVRPKGETTPPSPGKEGSLGAVGGAARAGSDVGEGGFGEGSHTLGRVEVCWRTTTGESGSIRGGPVVFEAPDRPEVEVTVDGLPDVLKLGRVAECVATVRNRSNRPMTLQLQFRTDGMVGVYVHGQSFRNLGELSPGAFVRCPLQLLALVAGLHELRGCTVADMHTAQEFAQGKLRDILVEFP 675
F L+P + Q +YC++PK E A +AG +G +G++++ W+T GE G ++ + AP ++ ++++ +PD + L + + + N S R M L+L+ ++ G S R LG+LSPGAF+ PL LL+ V GL + G + D + + + + V P
Sbjct: 226 FGKMSYLQPMDTRQYLYCLKPKPEY----------------AEKAGVI-------KGVTVIGKLDIVWKTNLGERGRLQTSQLQRMAPGYGDIRLSLEMIPDTVNLEEPFDIICKITNCSERTMDLELEMMNTR--SIHWCGVSGRQLGKLSPGAFLSLPLILLSSVQGLQSISGLRLTDTFLKRTYEYDDIAQVCVVCP 400
BLAST of mRNA_E-fasciculatus_F_contig13382.2531.1 vs. uniprot
Match: A0A669FAQ1_ORENI (Trafficking protein particle complex subunit 13 n=7 Tax=Cichlidae TaxID=8113 RepID=A0A669FAQ1_ORENI) HSP 1 Score: 79.0 bits (193), Expect = 2.880e-13 Identity = 52/200 (26.00%), Postives = 91/200 (45.50%), Query Frame = 1
Query: 76 FDGRVLLRPEEGHQLMYCVRPKGETTPPSPGKEGSLGAVGGAARAGSDVGEGGFGEGSHTLGRVEVCWRTTTGESGSIRGGPVVFEAPDRPEVEVTVDGLPDVLKLGRVAECVATVRNRSNRPMTLQLQFRTDGMVGVYVHGQSFRNLGELSPGAFVRCPLQLLALVAGLHELRGCTVADMHTAQEFAQGKLRDILVEFP 675
F L+P + Q +YC++PK E A +AG +G +G++++ W+T GE G ++ + AP ++ +++D +PD + L + + + N S R M L L+ ++ G S R LG+LSPGAF+ PL +L+ V GL + G + D + + + + V P
Sbjct: 210 FGKMSYLQPMDTRQYLYCLKPKPEY----------------AEKAGII-------KGVTVIGKLDIVWKTNLGERGRLQTSQLQRMAPGYGDIRLSLDLIPDTVNLEEPFDIICKITNCSERTMDLVLEMCNTS--SIHWCGISGRQLGKLSPGAFLSLPLTVLSSVQGLQSISGLRLTDTFLKRTYEYDDIAQVCVVCP 384
BLAST of mRNA_E-fasciculatus_F_contig13382.2531.1 vs. uniprot
Match: A0A669CCJ6_ORENI (Trafficking protein particle complex subunit 13 n=32 Tax=Percomorphaceae TaxID=1489872 RepID=A0A669CCJ6_ORENI) HSP 1 Score: 79.0 bits (193), Expect = 3.150e-13 Identity = 52/200 (26.00%), Postives = 91/200 (45.50%), Query Frame = 1
Query: 76 FDGRVLLRPEEGHQLMYCVRPKGETTPPSPGKEGSLGAVGGAARAGSDVGEGGFGEGSHTLGRVEVCWRTTTGESGSIRGGPVVFEAPDRPEVEVTVDGLPDVLKLGRVAECVATVRNRSNRPMTLQLQFRTDGMVGVYVHGQSFRNLGELSPGAFVRCPLQLLALVAGLHELRGCTVADMHTAQEFAQGKLRDILVEFP 675
F L+P + Q +YC++PK E A +AG +G +G++++ W+T GE G ++ + AP ++ +++D +PD + L + + + N S R M L L+ ++ G S R LG+LSPGAF+ PL +L+ V GL + G + D + + + + V P
Sbjct: 231 FGKMSYLQPMDTRQYLYCLKPKPEY----------------AEKAGII-------KGVTVIGKLDIVWKTNLGERGRLQTSQLQRMAPGYGDIRLSLDLIPDTVNLEEPFDIICKITNCSERTMDLVLEMCNTS--SIHWCGISGRQLGKLSPGAFLSLPLTVLSSVQGLQSISGLRLTDTFLKRTYEYDDIAQVCVVCP 405 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13382.2531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13382.2531.1 >prot_E-fasciculatus_F_contig13382.2531.1 ID=prot_E-fasciculatus_F_contig13382.2531.1|Name=mRNA_E-fasciculatus_F_contig13382.2531.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=208bp MYCVRPKGETTPPSPGKEGSLGAVGGAARAGSDVGEGGFGEGSHTLGRVEback to top mRNA from alignment at E-fasciculatus_F_contig13382:2..2664+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig13382.2531.1 ID=mRNA_E-fasciculatus_F_contig13382.2531.1|Name=mRNA_E-fasciculatus_F_contig13382.2531.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2663bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13382:2..2664+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13382:2..2664+ >mRNA_E-fasciculatus_F_contig13382.2531.1 ID=mRNA_E-fasciculatus_F_contig13382.2531.1|Name=mRNA_E-fasciculatus_F_contig13382.2531.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1248bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13382:2..2664+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |