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Homology
BLAST of mRNA_E-fasciculatus_F_contig13367.2522.1 vs. uniprot
Match: D8LIF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIF9_ECTSI) HSP 1 Score: 678 bits (1749), Expect = 3.070e-223 Identity = 356/398 (89.45%), Postives = 373/398 (93.72%), Query Frame = 1
Query: 100 VKAGLEGEYRFRVATDSSSRVALSVSGLELFDDLLPPSETSAGSAAEMAGDKASAGSAMLSKGRTGSLWLSAGEMVPLQLRYAHATGEAWVRLEWTASRTKTTEGLSVVPSTSLFHHRPGWKVAVDLHPAPTAAGASTIGVWPPASISGTDIEEDEGDRGDEDLEDEAESEAGSGGGLHVGEGNDGTAGWLAGTGLKQVTAGKMMEIVVQARDVHGNHRGVGGDSVQMYARGPGGVMLHGGAVDTGDGNYTVSAWPVVAGAYHMSVLVSALEPSRWALGYRSVEQAMAGAHVSGSPFRLVVVEGVVAANASLAFGVGIDSPLAGGVFGTSTFTIRARDSMGNRVSSGSTGDFNVEVFLADEDTVMTGDGVDPSPVSVGNAVYTAGGEYEGTYNVTVAG 1293
VKA LEGEYRFRVATD SSRVALSVSG+ELFDDLLP SET+ GSAA+M D+ASAG+AMLSKGRTGSL L+AGEMVPLQLRYAHATGEAWVRLEWTASRTK TEGLSVVPSTSLFHHR GWKVAVDLHPAPTAAGAST+ +WPPA IS TDI EDEGD GDE+L++E ESE G+GGGLH GEGNDGTAGW+AGTGLKQVTAGKMMEIVVQARD HGNHRGVGGDSVQMYARGPGGVMLHGGAVDTGDGNYTVSAWPV+AGAYHMSVLVS+LEPSRWALGYRSVEQAMAGAHVSGSPFRL+VVEG VAANASLAFGVGIDSPLAGGVFGTS FTIRARDSMGNRVSSGSTGDFNVE+FLADE TV GDGVDPSPVSVGNAVYTAGGEY TYNVTVAG
Sbjct: 1430 VKADLEGEYRFRVATDRSSRVALSVSGVELFDDLLPTSETTGGSAADMTSDEASAGTAMLSKGRTGSLLLAAGEMVPLQLRYAHATGEAWVRLEWTASRTKATEGLSVVPSTSLFHHRLGWKVAVDLHPAPTAAGASTVALWPPAPISDTDIGEDEGDGGDEELDEEEESEVGAGGGLHAGEGNDGTAGWMAGTGLKQVTAGKMMEIVVQARDDHGNHRGVGGDSVQMYARGPGGVMLHGGAVDTGDGNYTVSAWPVMAGAYHMSVLVSSLEPSRWALGYRSVEQAMAGAHVSGSPFRLLVVEGAVAANASLAFGVGIDSPLAGGVFGTSAFTIRARDSMGNRVSSGSTGDFNVELFLADEATVTMGDGVDPSPVSVGNAVYTAGGEYAATYNVTVAG 1827
BLAST of mRNA_E-fasciculatus_F_contig13367.2522.1 vs. uniprot
Match: A0A7S2C9F1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C9F1_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 9.880e-16 Identity = 106/359 (29.53%), Postives = 140/359 (39.00%), Query Frame = 1
Query: 322 MVPLQLRYAHATGEAWVRLEWTASRTKTTEGLSVVPSTSLFHHRP-------GWKVAVDLHPAPTAAGASTIGVWPPASISGTDIEEDEGDRGDEDLEDEAESEAGSGGGLHVGEGNDGTAGWLAGTGLKQVTAGKMMEIVVQARDVHGNHRGVGGDSVQMYAR------------------GPGGVMLHGGAVDTGDGNYTVSAWPVVAGAYHMSVLV--SALEPS-RWALGYRSVEQAMAGAHVSGSPFRLVVVEGVVAANASLAFG-------VGIDSPLAGGVFGTSTFTIRARDSMGNRVSSGSTGDFNVEVFLADEDTVMTGDGVDPSPVSVGNAVYTAGGEYEGTYNVTVAG 1293
+VPL + H TG A +++EW + TE + ST L+ P GW + V+ P+PT PP S + GTGL AG V+ARD GN R GGD V A G G +D GDG Y +S +P++AG Y MSVLV SA P+ LGY ++E+A AG+H+ GSPF++V+ G + AFG GI +P AGGV TI ARD N V G +F V++ T G P P G+ G Y TY +G
Sbjct: 130 LVPLVMSLRHQTGHASIKVEWESVSMARTE----LASTELYRILPISDKESVGWPLYVE--PSPTD---------PPTSTA-------------------------------------------VGTGLLSAIAGVTDHFTVEARDTFGNLRLKGGDQVSSVATQIVIGRTLSTDNEQSTYLGAGSFTTD--VIDAGDGTYNMSYYPIIAGVYTMSVLVGTSATGPAPHLDLGYSNIEEATAGSHIRGSPFKVVIHPGATFGSTCTAFGENTYRADAGIATP-AGGV------TIVARDKHSN-VRPGGGDEFVVKLVPVYPQEPRTMTGTAPDPSFDGSVTDNGDGTYSVTYYTNRSG 420
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 686.0 |
| Seed ortholog evalue | 1.1e-194 |
| Seed eggNOG ortholog | 2880.D8LIF9 |
| KEGG ko | ko:K04437,ko:K06572 |
| KEGG Pathway | ko04010,ko04360,ko04510,ko05132,ko05205,map04010,map04360,map04510,map05132,map05205 |
| EggNOG free text desc. | regulation of membrane repolarization during atrial cardiac muscle cell action potential |
| EggNOG OGs | COG5069@1,KOG0518@2759 |
| COG Functional cat. | Z |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko04090,ko04147,ko04812 |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 1296 |
| Cds size | 1293 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13367.2522.1 >prot_E-fasciculatus_F_contig13367.2522.1 ID=prot_E-fasciculatus_F_contig13367.2522.1|Name=mRNA_E-fasciculatus_F_contig13367.2522.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=431bp
SPSSTSSAEFASGNVSSSFFFPADYFSALFTGFVKAGLEGEYRFRVATDS SSRVALSVSGLELFDDLLPPSETSAGSAAEMAGDKASAGSAMLSKGRTGS LWLSAGEMVPLQLRYAHATGEAWVRLEWTASRTKTTEGLSVVPSTSLFHH RPGWKVAVDLHPAPTAAGASTIGVWPPASISGTDIEEDEGDRGDEDLEDE AESEAGSGGGLHVGEGNDGTAGWLAGTGLKQVTAGKMMEIVVQARDVHGN HRGVGGDSVQMYARGPGGVMLHGGAVDTGDGNYTVSAWPVVAGAYHMSVL VSALEPSRWALGYRSVEQAMAGAHVSGSPFRLVVVEGVVAANASLAFGVG IDSPLAGGVFGTSTFTIRARDSMGNRVSSGSTGDFNVEVFLADEDTVMTG DGVDPSPVSVGNAVYTAGGEYEGTYNVTVAG back to topmRNA from alignment at E-fasciculatus_F_contig13367:378..3404- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig13367.2522.1 ID=mRNA_E-fasciculatus_F_contig13367.2522.1|Name=mRNA_E-fasciculatus_F_contig13367.2522.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3027bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13367:378..3404- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) TCGCCATCGTCTACATCATCTGCGGAGTTTGCATCGGGGAACGTCTCTTC
GTCGTTTTTCTTCCCGGCGGACTATTTTTCAGCCCTTTTCACTGGGTTCG
GTGAGTTAGGGGTAAAGGCAGAGAGAAAGGGATACATCGGGTGACAGCTA
GAGAGAGAGCTAGAGGGAAAGATTTTCCTTGCCTTGCTCTATATGGGTTT
CCCGGGGTTGCAACGTTTCAATAACCTTACGACAAACGTCGTATTCCGAT
TGACAACACGCCCATCCCACCAACGAACTCTACCTTTACCAGTCAAGGCC
GGCCTCGAAGGCGAGTACCGGTTCCGAGTCGCCACGGACAGTAGTTCGAG
GGTCGCTCTGTCCGTGTCCGGACTCGAGTTGTTCGACGATCTCCTACCTC
CATCCGAAACATCTGCGGGATCCGCGGCCGAGATGGCAGGCGACAAGGCT
TCTGCTGGAAGCGCTATGCTATCTAAGGGAAGAACGGGGAGCCTGTGGTT
ATCAGCGGGCGAAATGGTCCCGCTGCAACTCCGATACGCGGTGAGGACAC
ATTTGCTGGGCGCTTTTTAGACCCCAACAATGGTGGCATCAACTCCAATA
TTGGCTGAAAGCCTTGACAAGAACCCAAAGAACGACACAGTTGAGGACAA
CACATACCTGACAATTATTAGAAAGAACACGCGGCGCTTCCCTCCTTCTC
GTCTTCTTCTGTCGATACACCTCTTCCCGCCGCCCCCGTCCCACCACCCT
GCCCCACCATCCGTCCCTGGTGCTGAACGCAGCACGCAACGGGTGAGGCA
TGGGTCCGACTGGAATGGACCGCCTCCCGAACCAAAACCACGGAAGGCCT
CTCCGTTGTCCCATCGACCAGCCTGTTCCACCACCGACCGGGCTGGAAGG
TCGCCGTCGATCTACACCCGGCTCCGACGGCAGCAGGGGCGTCAACCATA
GGGGTGTGGCCCCCGGCCTCCATCTCAGGCACCGACATCGAGGAAGATGA
GGGCGATAGGGGAGACGAGGACCTCGAGGATGAAGCGGAGAGTGAAGCTG
GGTCAGGAGGGGGGTTACACGTAGGGGAAGGGAATGATGGGACGGCCGGG
TGGTTGGCGGGGACAGGGCTGAAGCAGGTTACCGCCGGGAAGATGATGGA
GATCGTGGTGCAGGCGAGGGACGTCCACGGCAACCACCGCGGTGTTGGTG
AGTGGTTCGGACGCGGGAGTGTACGGGAGGGGATACTGGGAAGGGTCCGA
CAACTTTCCAAGAACGGGTGCTTTTGACAGGGAGCATGCGAAATGCATCT
CAAGGAAGCTATCAATGCACATGGTACATCTCTCGTGCCCTGTGTGTCGC
CTTGGCGCGTACGCAAATATCATGAAACAAGGCGATACACAAACCGCTTG
TTCAGATGTACGAGAAAGGACGCGGGCCGAAGAGAACTCAACGGTGTTTC
CACGACAGCATGACGTGAGAGATGTCGCTAGCAGTAGACAACGACGAATG
TCCACGCGGGAAGCGAATCACGGGCACACGGTGACGACGTGTTCGTGCGG
CGATACCACGCATCAATTCAATACCCTTTGGCCACTCATTCCTCGCCCCA
TCAGGCGGCGACAGCGTCCAAATGTACGCCCGAGGCCCCGGGGGGGTGAT
GCTTCACGGTGGTGCCGTGGACACCGGCGATGGCAACTACACGGTGTCTG
CCTGGCCGGTCGTGGCGGGGGCTTACCACATGAGCGTCCTAGTCAGCGCC
CTCGAGCCGTCGCGTTGGGCCCTTGGCTACAGGCAAGAGTACCCGGTATC
ACCAGAGGGAATCTCAACAACAAGCGTGGCAACACATGTGCTTCTTCACA
ACACCATCCGCAGCAAAACGCTTCGTTGTTGATTGGATGAAGCGTATCTC
TCTGTTCGTCACTGCAACACGCGAAACTTAAATCGGTGGAATAGCTGCCT
GCTGTTAACTTTAGAAGGTCCGTATGACATCTAGCTTGGTCCAATCCGAA
TACCTTGGGACACTACGTAGAGCGAATCTGTGAAGACTAACCCTCTTCCC
TACAGACAGGAGAACTTCAGGTATTTTCGAAAAGATGTCGGGGGGACTGC
AAAACCCCCAAGACCTCAGATGACAGTCGTATGCACCTGTGACGAACCGG
GGTTAAGATTCTCAAATACCCCGTCGTAAAGACAGCATGCGAGGTAATGA
TGGCGTCGCAACACCCTGAAACCATTGCACAGAAAAGCGCACCACGCTCG
GAACAAACATCCGGGCGAAACGCGTCGTTGCCGCCCAGGAAACCCCTTAC
ACTGATTTTGTTTTTCGTTGGGAGATACGATCGACGGAGGTGTGTTCAAC
TCTTTGTGGTAGGAGTAATGTCACCCTCATACCCGGCCTTTCTTGATTTT
TCTGGACATCATCAGGAGCGTCGAGCAAGCGATGGCCGGGGCACACGTGT
CCGGTAGTCCGTTCCGGTTGGTGGTGGTGGAGGGAGTCGTGGCTGCCAAC
GCCTCCTTGGCGTTCGGGGTAGGGATCGATTCGCCACTCGCCGGAGGCGT
GTTCGGCACATCCACCTTTACGATCAGGCAAGGGAGACCACCTCCTGCTA
GCAGGGTCAAAACATCAAGGATTACCACAAAAGCAAGGGGATGCCTTAAG
CGTTTCCTCCGCTCTCCTCACCTCCCACGGCACATATGAGACTTGAAAAA
CACCACAACACTAGCAACATCTCTAGCACGATGAATAGGAACGGCTCCGT
CTCAACAGGGACGTGTGATCAGTGATCAAACGGCCTAGGCAAGCATCAAA
CAACTGCTCCTTCCAACGAACCACGGCCATGAACAGAGCGAGGGATTCGA
TGGGGAACCGGGTGTCCTCCGGAAGCACGGGCGACTTTAACGTGGAAGTA
TTCCTGGCGGACGAAGATACGGTGATGACGGGGGACGGCGTCGATCCATC
CCCGGTTTCTGTCGGGAACGCCGTGTACACGGCCGGGGGGGAGTACGAGG
GGACATACAACGTTACCGTCGCGGGGG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig13367:378..3404- >mRNA_E-fasciculatus_F_contig13367.2522.1 ID=mRNA_E-fasciculatus_F_contig13367.2522.1|Name=mRNA_E-fasciculatus_F_contig13367.2522.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2586bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13367:378..3404- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) TCGCCATCGTCTACATCATCTGCGGAGTTTGCATCGGGGAACGTCTCTTC GTCGTTTTTCTTCCCGGCGGACTATTTTTCAGCCCTTTTCACTGGGTTCG TCGCCATCGTCTACATCATCTGCGGAGTTTGCATCGGGGAACGTCTCTTC GTCGTTTTTCTTCCCGGCGGACTATTTTTCAGCCCTTTTCACTGGGTTCG TCAAGGCCGGCCTCGAAGGCGAGTACCGGTTCCGAGTCGCCACGGACAGT AGTTCGAGGGTCGCTCTGTCCGTGTCCGGACTCGAGTTGTTCGACGATCT CCTACCTCCATCCGAAACATCTGCGGGATCCGCGGCCGAGATGGCAGGCG ACAAGGCTTCTGCTGGAAGCGCTATGCTATCTAAGGGAAGAACGGGGAGC CTGTGGTTATCAGCGGGCGAAATGGTCCCGCTGCAACTCCGATACGCGTC AAGGCCGGCCTCGAAGGCGAGTACCGGTTCCGAGTCGCCACGGACAGTAG TTCGAGGGTCGCTCTGTCCGTGTCCGGACTCGAGTTGTTCGACGATCTCC TACCTCCATCCGAAACATCTGCGGGATCCGCGGCCGAGATGGCAGGCGAC AAGGCTTCTGCTGGAAGCGCTATGCTATCTAAGGGAAGAACGGGGAGCCT GTGGTTATCAGCGGGCGAAATGGTCCCGCTGCAACTCCGATACGCGCACG CAACGGGTGAGGCATGGGTCCGACTGGAATGGACCGCCTCCCGAACCAAA ACCACGGAAGGCCTCTCCGTTGTCCCATCGACCAGCCTGTTCCACCACCG ACCGGGCTGGAAGGTCGCCGTCGATCTACACCCGGCTCCGACGGCAGCAG GGGCGTCAACCATAGGGGTGTGGCCCCCGGCCTCCATCTCAGGCACCGAC ATCGAGGAAGATGAGGGCGATAGGGGAGACGAGGACCTCGAGGATGAAGC GGAGAGTGAAGCTGGGTCAGGAGGGGGGTTACACGTAGGGGAAGGGAATG ATGGGACGGCCGGGTGGTTGGCGGGGACAGGGCTGAAGCAGGTTACCGCC GGGAAGATGATGGAGATCGTGGTGCAGGCGAGGGACGTCCACGGCAACCA CCGCGGTGTTGCACGCAACGGGTGAGGCATGGGTCCGACTGGAATGGACC GCCTCCCGAACCAAAACCACGGAAGGCCTCTCCGTTGTCCCATCGACCAG CCTGTTCCACCACCGACCGGGCTGGAAGGTCGCCGTCGATCTACACCCGG CTCCGACGGCAGCAGGGGCGTCAACCATAGGGGTGTGGCCCCCGGCCTCC ATCTCAGGCACCGACATCGAGGAAGATGAGGGCGATAGGGGAGACGAGGA CCTCGAGGATGAAGCGGAGAGTGAAGCTGGGTCAGGAGGGGGGTTACACG TAGGGGAAGGGAATGATGGGACGGCCGGGTGGTTGGCGGGGACAGGGCTG AAGCAGGTTACCGCCGGGAAGATGATGGAGATCGTGGTGCAGGCGAGGGA CGTCCACGGCAACCACCGCGGTGTTGGCGGCGACAGCGTCCAAATGTACG CCCGAGGCCCCGGGGGGGTGATGCTTCACGGTGGTGCCGTGGACACCGGC GATGGCAACTACACGGTGTCTGCCTGGCCGGTCGTGGCGGGGGCTTACCA CATGAGCGTCCTAGTCAGCGCCCTCGAGCCGTCGCGTTGGGCCCTTGGCT ACAGGCGGCGACAGCGTCCAAATGTACGCCCGAGGCCCCGGGGGGGTGAT GCTTCACGGTGGTGCCGTGGACACCGGCGATGGCAACTACACGGTGTCTG CCTGGCCGGTCGTGGCGGGGGCTTACCACATGAGCGTCCTAGTCAGCGCC CTCGAGCCGTCGCGTTGGGCCCTTGGCTACAGGAGCGTCGAGCAAGCGAT GGCCGGGGCACACGTGTCCGGTAGTCCGTTCCGGTTGGTGGTGGTGGAGG GAGTCGTGGCTGCCAACGCCTCCTTGGCGTTCGGGGTAGGGATCGATTCG CCACTCGCCGGAGGCGTGTTCGGCACATCCACCTTTACGATCAGGAGCGT CGAGCAAGCGATGGCCGGGGCACACGTGTCCGGTAGTCCGTTCCGGTTGG TGGTGGTGGAGGGAGTCGTGGCTGCCAACGCCTCCTTGGCGTTCGGGGTA GGGATCGATTCGCCACTCGCCGGAGGCGTGTTCGGCACATCCACCTTTAC GATCAGAGCGAGGGATTCGATGGGGAACCGGGTGTCCTCCGGAAGCACGG GCGACTTTAACGTGGAAGTATTCCTGGCGGACGAAGATACGGTGATGACG GGGGACGGCGTCGATCCATCCCCGGTTTCTGTCGGGAACGCCGTGTACAC GGCCGGGGGGGAGTACGAGGGGACATACAACGTTACCGTCGCGGGGAGCG AGGGATTCGATGGGGAACCGGGTGTCCTCCGGAAGCACGGGCGACTTTAA CGTGGAAGTATTCCTGGCGGACGAAGATACGGTGATGACGGGGGACGGCG TCGATCCATCCCCGGTTTCTGTCGGGAACGCCGTGTACACGGCCGGGGGG GAGTACGAGGGGACATACAACGTTACCGTCGCGGGG back to top
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