prot_E-fasciculatus_F_contig1332.2498.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig1332.2498.1
Unique Nameprot_E-fasciculatus_F_contig1332.2498.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length170
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1332.2498.1 vs. uniprot
Match: A0A6H5KKG1_9PHAE (VPS13_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKG1_9PHAE)

HSP 1 Score: 277 bits (709), Expect = 2.780e-83
Identity = 150/171 (87.72%), Postives = 154/171 (90.06%), Query Frame = 0 
Query:    1 TAGIRRLVRLGGARVTAEILSKLVGDTEPTSVGTLYSTPDFLFNASLESGEVCVSVGAALLVLEVDVLARKMGGVYPDALA-NVGGTSAPRVHRNRGWSRGVGAVLEGVSVGGVMKSGGCQLTGNMRRLSVGRVGAGAPLNREPFVMPSDVAVLEAWRGEVSDEGLSWTLE 170
            TAGIRRLVRLGGARVTAEILSKLVGDTEPT+VGT YS PDFLFNASLESGEVCVSVGAALLVLE  VLARKMGGVYPDALA +VG   APRVHRNRGWSRGVGA LEGVSVGGV+KSGGCQLTGNMRRLSVGR+GAG PL  E  VMPSDV VLEA RGE SDEGLSWTLE
Sbjct: 1167 TAGIRRLVRLGGARVTAEILSKLVGDTEPTAVGT-YSAPDFLFNASLESGEVCVSVGAALLVLEAYVLARKMGGVYPDALAISVGEICAPRVHRNRGWSRGVGAALEGVSVGGVVKSGGCQLTGNMRRLSVGRMGAGVPLQGESSVMPSDVVVLEALRGEGSDEGLSWTLE 1336
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1332.2498.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKG1_9PHAE2.780e-8387.72VPS13_C domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1332contigE-fasciculatus_F_contig1332:16871..17380 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1332.2498.1mRNA_E-fasciculatus_F_contig1332.2498.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig1332 16871..17380 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig1332.2498.1 ID=prot_E-fasciculatus_F_contig1332.2498.1|Name=mRNA_E-fasciculatus_F_contig1332.2498.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=170bp
TAGIRRLVRLGGARVTAEILSKLVGDTEPTSVGTLYSTPDFLFNASLESG
EVCVSVGAALLVLEVDVLARKMGGVYPDALANVGGTSAPRVHRNRGWSRG
VGAVLEGVSVGGVMKSGGCQLTGNMRRLSVGRVGAGAPLNREPFVMPSDV
AVLEAWRGEVSDEGLSWTLE
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