mRNA_E-fasciculatus_F_contig1332.2498.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1332.2498.1
Unique NamemRNA_E-fasciculatus_F_contig1332.2498.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1332.2498.1 vs. uniprot
Match: A0A6H5KKG1_9PHAE (VPS13_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKG1_9PHAE)

HSP 1 Score: 277 bits (709), Expect = 2.780e-83
Identity = 150/171 (87.72%), Postives = 154/171 (90.06%), Query Frame = 1 
Query:    1 TAGIRRLVRLGGARVTAEILSKLVGDTEPTSVGTLYSTPDFLFNASLESGEVCVSVGAALLVLEVDVLARKMGGVYPDALA-NVGGTSAPRVHRNRGWSRGVGAVLEGVSVGGVMKSGGCQLTGNMRRLSVGRVGAGAPLNREPFVMPSDVAVLEAWRGEVSDEGLSWTLE 510
            TAGIRRLVRLGGARVTAEILSKLVGDTEPT+VGT YS PDFLFNASLESGEVCVSVGAALLVLE  VLARKMGGVYPDALA +VG   APRVHRNRGWSRGVGA LEGVSVGGV+KSGGCQLTGNMRRLSVGR+GAG PL  E  VMPSDV VLEA RGE SDEGLSWTLE
Sbjct: 1167 TAGIRRLVRLGGARVTAEILSKLVGDTEPTAVGT-YSAPDFLFNASLESGEVCVSVGAALLVLEAYVLARKMGGVYPDALAISVGEICAPRVHRNRGWSRGVGAALEGVSVGGVVKSGGCQLTGNMRRLSVGRMGAGVPLQGESSVMPSDVVVLEALRGEGSDEGLSWTLE 1336
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1332.2498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKG1_9PHAE2.780e-8387.72VPS13_C domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1332contigE-fasciculatus_F_contig1332:16871..17380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score283.5
Seed ortholog evalue6.5e-74
Seed eggNOG ortholog2880.D8LBD2
Preferred nameVPS13B
KEGG koko:K19526
GOsGO:0005575,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0007034,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0019898,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0044425,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0072665,GO:0072666
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categorymitochondrion
Exons1
Model size512
Cds size510
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927834.717731-CDS-E-fasciculatus_F_contig1332:16870..173801622927834.717731-CDS-E-fasciculatus_F_contig1332:16870..17380Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1332 16871..17380 +
1695995715.381561-CDS-E-fasciculatus_F_contig1332:16870..173801695995715.381561-CDS-E-fasciculatus_F_contig1332:16870..17380Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1332 16871..17380 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1332.2498.1prot_E-fasciculatus_F_contig1332.2498.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1332 16871..17380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1332.2498.1

>prot_E-fasciculatus_F_contig1332.2498.1 ID=prot_E-fasciculatus_F_contig1332.2498.1|Name=mRNA_E-fasciculatus_F_contig1332.2498.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=170bp
TAGIRRLVRLGGARVTAEILSKLVGDTEPTSVGTLYSTPDFLFNASLESG
EVCVSVGAALLVLEVDVLARKMGGVYPDALANVGGTSAPRVHRNRGWSRG
VGAVLEGVSVGGVMKSGGCQLTGNMRRLSVGRVGAGAPLNREPFVMPSDV
AVLEAWRGEVSDEGLSWTLE
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mRNA from alignment at E-fasciculatus_F_contig1332:16871..17380+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1332.2498.1 ID=mRNA_E-fasciculatus_F_contig1332.2498.1|Name=mRNA_E-fasciculatus_F_contig1332.2498.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=510bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1332:16871..17380+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACGGCCGGCATACGGCGTCTCGTGCGGCTCGGCGGTGCCCGTGTGACGGC
CGAGATTTTGAGCAAGCTCGTCGGAGACACAGAGCCGACGTCGGTGGGTA
CGTTATATAGTACGCCTGACTTTCTCTTCAATGCGTCACTCGAGTCCGGG
GAAGTGTGTGTCAGCGTTGGAGCTGCCCTGCTGGTCCTAGAAGTAGATGT
GCTGGCGAGGAAAATGGGCGGGGTCTACCCGGACGCGCTAGCTAATGTCG
GTGGGACTAGCGCGCCTAGAGTCCACCGGAATCGCGGCTGGTCCCGCGGT
GTAGGAGCCGTACTTGAAGGCGTAAGCGTTGGCGGGGTGATGAAAAGCGG
GGGCTGTCAGTTGACCGGGAACATGCGTCGTCTAAGCGTCGGTCGCGTGG
GCGCCGGAGCGCCGCTGAATCGGGAACCCTTCGTGATGCCGTCCGATGTG
GCGGTGCTCGAGGCATGGCGGGGTGAAGTTAGCGACGAAGGGTTGTCCTG
GACCCTGGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1332:16871..17380+

>mRNA_E-fasciculatus_F_contig1332.2498.1 ID=mRNA_E-fasciculatus_F_contig1332.2498.1|Name=mRNA_E-fasciculatus_F_contig1332.2498.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1020bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1332:16871..17380+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACGGCCGGCATACGGCGTCTCGTGCGGCTCGGCGGTGCCCGTGTGACGGC
CGAGATTTTGAGCAAGCTCGTCGGAGACACAGAGCCGACGTCGGTGGGTA
CGTTATATAGTACGCCTGACTTTCTCTTCAATGCGTCACTCGAGTCCGGG
GAAGTGTGTGTCAGCGTTGGAGCTGCCCTGCTGGTCCTAGAAGTAGATGT
GCTGGCGAGGAAAATGGGCGGGGTCTACCCGGACGCGCTAGCTAATGTCG
GTGGGACTAGCGCGCCTAGAGTCCACCGGAATCGCGGCTGGTCCCGCGGT
GTAGGAGCCGTACTTGAAGGCGTAAGCGTTGGCGGGGTGATGAAAAGCGG
GGGCTGTCAGTTGACCGGGAACATGCGTCGTCTAAGCGTCGGTCGCGTGG
GCGCCGGAGCGCCGCTGAATCGGGAACCCTTCGTGATGCCGTCCGATGTG
GCGGTGCTCGAGGCATGGCGGGGTGAAGTTAGCGACGAAGGGTTGTCCTG
GACCCTGGAGACGGCCGGCATACGGCGTCTCGTGCGGCTCGGCGGTGCCC
GTGTGACGGCCGAGATTTTGAGCAAGCTCGTCGGAGACACAGAGCCGACG
TCGGTGGGTACGTTATATAGTACGCCTGACTTTCTCTTCAATGCGTCACT
CGAGTCCGGGGAAGTGTGTGTCAGCGTTGGAGCTGCCCTGCTGGTCCTAG
AAGTAGATGTGCTGGCGAGGAAAATGGGCGGGGTCTACCCGGACGCGCTA
GCTAATGTCGGTGGGACTAGCGCGCCTAGAGTCCACCGGAATCGCGGCTG
GTCCCGCGGTGTAGGAGCCGTACTTGAAGGCGTAAGCGTTGGCGGGGTGA
TGAAAAGCGGGGGCTGTCAGTTGACCGGGAACATGCGTCGTCTAAGCGTC
GGTCGCGTGGGCGCCGGAGCGCCGCTGAATCGGGAACCCTTCGTGATGCC
GTCCGATGTGGCGGTGCTCGAGGCATGGCGGGGTGAAGTTAGCGACGAAG
GGTTGTCCTGGACCCTGGAG
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