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Homology
BLAST of mRNA_E-fasciculatus_F_contig1332.2496.1 vs. uniprot
Match: A0A6H5KKG1_9PHAE (VPS13_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKG1_9PHAE) HSP 1 Score: 600 bits (1548), Expect = 5.540e-192 Identity = 331/425 (77.88%), Postives = 346/425 (81.41%), Query Frame = 3
Query: 3 MKELIDRAVAHVALNARRNTHAESPVQGAAPSSVVEGEAPVASSWWPSFWRGTAPEDIDEGLPEGGAEMTSFEMNHGALGTSSPA----------------------PFESREYHTKFVVASASVGSVSLRLLEHQEQPAHAETKEKGEEEECNSPEDEEPLSISVPVHGLGTVSVFSTPVSARKQALRPPVVFVVAEVKGLALDAHVLPSDNELSTDVKVDVSSVVVRHARLFEHAATPAADKPPDQADKRLDYLEPVVSWGAAVIPDAPPTAQEAHLSSGGTDAFADPRTAAIVQRCLIELAQGSPELGATDGESIDGDSNSSRQSARAPAPDVPXXXPAPWAPAFPSATPQPVRKDSSALQYRLLKRKGGGTSTDGSPRGGGGAVTGTVSTLACHDMAMGALRVQLAEVLLEKLLRFSGVVG 1211
MKELIDRAVAHVALNARRNTHAESP+QGA PS+V EGEA VASSWWPSFWRGTAPEDIDEGLPEGG E TS EMNHG LGTSSPA PFESREYHTKFVVASASVGSVSLRL EHQEQPAHAE E+GEEEECNSPEDEEPLSISVPVHGLGTVSVFSTPVSAR + R V+ SDNELSTDVKVDVSS+VVRHARLFE AATPAADKPPDQADK LDYLEPVVSWGAAV+PDAPPT+QE L SG TD AD RTAAIVQRCLIELAQGSPELGA DGESIDG+SNSSRQSARAP XXX PWA FPSA P+PV KDSSALQYRLLKRKGGGTSTDGSP GG A+TGTVSTLACHD+A+GALRVQLAE+LLEKLL+F GVVG
Sbjct: 556 MKELIDRAVAHVALNARRNTHAESPIQGAPPSAVAEGEAQVASSWWPSFWRGTAPEDIDEGLPEGGTETTSTEMNHGTLGTSSPAEHFVHVLLLLFVFAAGGLRNPAPFESREYHTKFVVASASVGSVSLRLFEHQEQPAHAEPTERGEEEECNSPEDEEPLSISVPVHGLGTVSVFSTPVSARWEDWRV-----------------VVASDNELSTDVKVDVSSIVVRHARLFEDAATPAADKPPDQADKGLDYLEPVVSWGAAVMPDAPPTSQEGDLGSGRTDGLADLRTAAIVQRCLIELAQGSPELGAADGESIDGESNSSRQSARAPXXXXXXXXXXPWAQVFPSAAPRPVPKDSSALQYRLLKRKGGGTSTDGSPDSGGVAITGTVSTLACHDLAVGALRVQLAELLLEKLLKFFGVVG 963
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 669.5 |
| Seed ortholog evalue | 1e-189 |
| Seed eggNOG ortholog | 2880.D8LBD2 |
| Preferred name | VPS13B |
| KEGG ko | ko:K19526 |
| GOs | GO:0005575,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0007034,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0019898,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0044425,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0072665,GO:0072666 |
| EggNOG free text desc. | regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization |
| EggNOG OGs | COG5043@1,KOG1809@2759 |
| COG Functional cat. | U |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 1213 |
| Cds size | 1209 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927834.5901067-UTR-E-fasciculatus_F_contig1332:13996..13998 | 1622927834.5901067-UTR-E-fasciculatus_F_contig1332:13996..13998 | Ectocarpus fasciculatus Ec846f_Ec191_B4_f female | UTR | E-fasciculatus_F_contig1332 13997..13998 + |
| 1695995715.275888-UTR-E-fasciculatus_F_contig1332:13996..13998 | 1695995715.275888-UTR-E-fasciculatus_F_contig1332:13996..13998 | Ectocarpus fasciculatus Ec846f_Ec191_B4_f female | UTR | E-fasciculatus_F_contig1332 13997..13998 + |
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1332.2496.1 >prot_E-fasciculatus_F_contig1332.2496.1 ID=prot_E-fasciculatus_F_contig1332.2496.1|Name=mRNA_E-fasciculatus_F_contig1332.2496.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=403bp
MKELIDRAVAHVALNARRNTHAESPVQGAAPSSVVEGEAPVASSWWPSFW
RGTAPEDIDEGLPEGGAEMTSFEMNHGALGTSSPAPFESREYHTKFVVAS
ASVGSVSLRLLEHQEQPAHAETKEKGEEEECNSPEDEEPLSISVPVHGLG
TVSVFSTPVSARKQALRPPVVFVVAEVKGLALDAHVLPSDNELSTDVKVD
VSSVVVRHARLFEHAATPAADKPPDQADKRLDYLEPVVSWGAAVIPDAPP
TAQEAHLSSGGTDAFADPRTAAIVQRCLIELAQGSPELGATDGESIDGDS
NSSRQSARAPAPDVPAPSPAPWAPAFPSATPQPVRKDSSALQYRLLKRKG
GGTSTDGSPRGGGGAVTGTVSTLACHDMAMGALRVQLAEVLLEKLLRFSG
VVG back to topmRNA from alignment at E-fasciculatus_F_contig1332:13997..16249+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1332.2496.1 ID=mRNA_E-fasciculatus_F_contig1332.2496.1|Name=mRNA_E-fasciculatus_F_contig1332.2496.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2253bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1332:13997..16249+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGATGAAGGAGCTCATTGACAGAGCGGTTGCTCATGTCGCCCTCAATGCC
CGTCGAAACACTCACGCCGAGTCCCCGGTCCAAGGAGCTGCCCCTAGCTC
AGTGGTGGAAGGAGAAGCACCAGTCGCGTCAAGCTGGTGGCCTTCTTTCT
GGAGGGTGAGTGTGTCATGATTCTCCCGAGGGAGCACCATGTGCCCACGA
GCCAGAGAGAGGCATGCACAACGTTTGCGAATTGAAGGCGCACAATGTAT
AGACGAGTCGAGAGATGTTTGGGGGGCGTAGTTGGATAGCTGCTGACTTG
ACTTGATATGGACTCACAACGATATTCGACCAGTCCTGAGGTGCGTTGAA
GAAACCCATGCCTCGGCGTGTCGCTGGTGTTCAGGGAACGGCGCCCGAAG
ACATCGACGAAGGCCTGCCGGAGGGGGGCGCGGAGATGACGAGCTTTGAG
ATGAACCATGGAGCGCTCGGCACGAGCAGTCCAGGTGAGAGTTGTTGGTC
ACGTCCCCAGCGCCATGTGGCCAGACTTCTGCAGTACGTCTCACTGCTGT
GCCTTCTCCGTCGATGGCTTTGTCAGCTGAATGAACCCTTTGTTCCATTT
GTTGTTCTGTTTCTCTCCGTGTTTGCTACCGGGGCCCCGTAACTCAGCGC
CTTTCGAGTCGCGTGAGTACCACACCAAGTTTGTCGTGGCATCGGCGTCA
GTCGGTAGCGTCTCGCTTCGTTTGTTGGAGCACCAGGAGCAGCCGGCCCA
CGCGGAGACGAAAGAAAAGGGGGAGGAAGAGGAGTGCAACTCGCCGGAGG
ATGAAGAACCGCTGTCGATATCTGTCCCTGTGCATGGGCTGGGCACGGTC
AGCGTCTTCTCTACTCCTGTCAGCGCAAGGTGGGAAGACGAGCGGGTATG
TAGCTTCCGCTAGGCTTTGTGCATCACAACGCCGCTTTTGACATTATGCG
TTGAGCCGAAGCCCAGGCCCGGGCAACGTAGGTCGGAAAAGAGCAAACCT
CGACTAACAGCCACGTGTTCAGGCGTCGAAAGAAGCACTTTGTTTGGTGA
GGTTGGTTCAAGTAGAACAACGTCATGGCTACAGGTTATCGTGGCCGGTG
ATACGTATACCCTGACAGCCTACCAACATCCGTCATGGCGTTTACCTTTC
GCAGAAAACAAGCTCTTCGGCCACCAGTCGTCTTCGTGGTGGCGGAAGTG
AAAGGTCTTGCGCTAGACGCTCACGTCCTACCAAGTGAGTCACGGCAGGG
TTGTGCTACGCTGGTCTCGGGTGTTTTTCCCCCGCCTCGCTTCATGGTCC
TCCTGGCACACGTGTGTTCCCAACAACTGTCTGATCGCGAGTGTGGTTTG
GGTTTGGTGAACGCGCCTGAGGAGCCGCTGTTCGTCCTACGCTTTGGCCG
TCCTATACATGTTTTCGGGCTCTCGGTTTATGTATCTGTGCATGGCAATG
GTTTGCTTTGCGTGGAAGATGCGGGCTCGAAAGTAAGCTCAGGGTGCTCC
GCCGCTCGATAGCGTCATATTAGCACCCTCTCCACCTCAAAGGTACCTTG
CTGGTGATCCATTTCCTTCCGTACCGCATGTCCTTCGCCACCGTGTGCGC
TGTCTGCAGGCGACAACGAGCTCTCGACGGACGTGAAGGTGGACGTTTCG
TCCGTCGTTGTACGACACGCTCGCCTCTTTGAGCACGCTGCCACCCCTGC
CGCCGATAAGCCACCGGACCAGGCAGACAAGAGGCTGGACTATCTGGAGC
CCGTCGTGTCGTGGGGTGCCGCGGTCATCCCCGACGCCCCTCCTACTGCC
CAGGAAGCACATCTCAGCAGCGGAGGGACGGATGCTTTTGCGGACCCCAG
GACGGCGGCGATCGTTCAGCGGTGCTTGATCGAGCTTGCGCAAGGCTCAC
CCGAATTGGGAGCCACCGATGGCGAGTCGATCGACGGTGACAGCAATTCG
TCGCGACAAAGCGCCCGAGCGCCTGCGCCAGACGTCCCGGCTCCGTCGCC
GGCGCCGTGGGCGCCGGCCTTCCCTTCGGCAACGCCGCAGCCCGTGCGAA
AGGATAGCAGCGCCTTGCAGTACAGGTTACTGAAGCGGAAGGGCGGCGGC
ACCTCGACTGACGGGTCTCCTCGTGGTGGCGGCGGCGCTGTCACCGGTAC
CGTGTCGACCCTGGCGTGCCATGACATGGCCATGGGTGCACTCCGAGTGC
AGCTCGCGGAGGTGTTGCTGGAAAAGCTCTTGAGATTTTCCGGGGTCGTC
GGC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1332:13997..16249+ >mRNA_E-fasciculatus_F_contig1332.2496.1 ID=mRNA_E-fasciculatus_F_contig1332.2496.1|Name=mRNA_E-fasciculatus_F_contig1332.2496.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2418bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1332:13997..16249+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAGGAGCTCATTGACAGAGCGGTTGCTCATGTCGCCCTCAATGCCCG
TCGAAACACTCACGCCGAGTCCCCGGTCCAAGGAGCTGCCCCTAGCTCAG
TGGTGGAAGGAGAAGCACCAGTCGCGTCAAGCTGGTGGCCTTCTTTCTGG
AGGATGAAGGAGCTCATTGACAGAGCGGTTGCTCATGTCGCCCTCAATGC
CCGTCGAAACACTCACGCCGAGTCCCCGGTCCAAGGAGCTGCCCCTAGCT
CAGTGGTGGAAGGAGAAGCACCAGTCGCGTCAAGCTGGTGGCCTTCTTTC
TGGAGGGGAACGGCGCCCGAAGACATCGACGAAGGCCTGCCGGAGGGGGG
CGCGGAGATGACGAGCTTTGAGATGAACCATGGAGCGCTCGGCACGAGCA
GTCCAGGGAACGGCGCCCGAAGACATCGACGAAGGCCTGCCGGAGGGGGG
CGCGGAGATGACGAGCTTTGAGATGAACCATGGAGCGCTCGGCACGAGCA
GTCCAGCGCCTTTCGAGTCGCGTGAGTACCACACCAAGTTTGTCGTGGCA
TCGGCGTCAGTCGGTAGCGTCTCGCTTCGTTTGTTGGAGCACCAGGAGCA
GCCGGCCCACGCGGAGACGAAAGAAAAGGGGGAGGAAGAGGAGTGCAACT
CGCCGGAGGATGAAGAACCGCTGTCGATATCTGTCCCTGTGCATGGGCTG
GGCACGGTCAGCGTCTTCTCTACTCCTGTCAGCGCAAGCGCCTTTCGAGT
CGCGTGAGTACCACACCAAGTTTGTCGTGGCATCGGCGTCAGTCGGTAGC
GTCTCGCTTCGTTTGTTGGAGCACCAGGAGCAGCCGGCCCACGCGGAGAC
GAAAGAAAAGGGGGAGGAAGAGGAGTGCAACTCGCCGGAGGATGAAGAAC
CGCTGTCGATATCTGTCCCTGTGCATGGGCTGGGCACGGTCAGCGTCTTC
TCTACTCCTGTCAGCGCAAGAAAACAAGCTCTTCGGCCACCAGTCGTCTT
CGTGGTGGCGGAAGTGAAAGGTCTTGCGCTAGACGCTCACGTCCTACCAA
AAAACAAGCTCTTCGGCCACCAGTCGTCTTCGTGGTGGCGGAAGTGAAAG
GTCTTGCGCTAGACGCTCACGTCCTACCAAGCGACAACGAGCTCTCGACG
GACGTGAAGGTGGACGTTTCGTCCGTCGTTGTACGACACGCTCGCCTCTT
TGAGCACGCTGCCACCCCTGCCGCCGATAAGCCACCGGACCAGGCAGACA
AGAGGCTGGACTATCTGGAGCCCGTCGTGTCGTGGGGTGCCGCGGTCATC
CCCGACGCCCCTCCTACTGCCCAGGAAGCACATCTCAGCAGCGGAGGGAC
GGATGCTTTTGCGGACCCCAGGACGGCGGCGATCGTTCAGCGGTGCTTGA
TCGAGCTTGCGCAAGGCTCACCCGAATTGGGAGCCACCGATGGCGAGTCG
ATCGACGGTGACAGCAATTCGTCGCGACAAAGCGCCCGAGCGCCTGCGCC
AGACGTCCCGGCTCCGTCGCCGGCGCCGTGGGCGCCGGCCTTCCCTTCGG
CAACGCCGCAGCCCGTGCGAAAGGATAGCAGCGCCTTGCAGTACAGGTTA
CTGAAGCGGAAGGGCGGCGGCACCTCGACTGACGGGTCTCCTCGTGGTGG
CGGCGGCGCTGTCACCGGTACCGTGTCGACCCTGGCGTGCCATGACATGG
CCATGGGTGCACTCCGAGTGCAGCTCGCGGAGGTGTTGCTGGAAAAGCTC
TTGAGATTTTCCGGGGTCGTCGGCGCGACAACGAGCTCTCGACGGACGTG
AAGGTGGACGTTTCGTCCGTCGTTGTACGACACGCTCGCCTCTTTGAGCA
CGCTGCCACCCCTGCCGCCGATAAGCCACCGGACCAGGCAGACAAGAGGC
TGGACTATCTGGAGCCCGTCGTGTCGTGGGGTGCCGCGGTCATCCCCGAC
GCCCCTCCTACTGCCCAGGAAGCACATCTCAGCAGCGGAGGGACGGATGC
TTTTGCGGACCCCAGGACGGCGGCGATCGTTCAGCGGTGCTTGATCGAGC
TTGCGCAAGGCTCACCCGAATTGGGAGCCACCGATGGCGAGTCGATCGAC
GGTGACAGCAATTCGTCGCGACAAAGCGCCCGAGCGCCTGCGCCAGACGT
CCCGGCTCCGTCGCCGGCGCCGTGGGCGCCGGCCTTCCCTTCGGCAACGC
CGCAGCCCGTGCGAAAGGATAGCAGCGCCTTGCAGTACAGGTTACTGAAG
CGGAAGGGCGGCGGCACCTCGACTGACGGGTCTCCTCGTGGTGGCGGCGG
CGCTGTCACCGGTACCGTGTCGACCCTGGCGTGCCATGACATGGCCATGG
GTGCACTCCGAGTGCAGCTCGCGGAGGTGTTGCTGGAAAAGCTCTTGAGA
TTTTCCGGGGTCGTCGGC back to top
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