mRNA_E-fasciculatus_F_contig13290.2477.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13290.2477.1
Unique NamemRNA_E-fasciculatus_F_contig13290.2477.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13290.2477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13290contigE-fasciculatus_F_contig13290:2725..3316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size592
Cds size387
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927831.5909178-CDS-E-fasciculatus_F_contig13290:2724..31111622927831.5909178-CDS-E-fasciculatus_F_contig13290:2724..3111Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13290 2725..3111 +
1695995713.6848185-CDS-E-fasciculatus_F_contig13290:2724..31111695995713.6848185-CDS-E-fasciculatus_F_contig13290:2724..3111Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13290 2725..3111 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927831.602938-UTR-E-fasciculatus_F_contig13290:3111..33161622927831.602938-UTR-E-fasciculatus_F_contig13290:3111..3316Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13290 3112..3316 +
1695995713.6926382-UTR-E-fasciculatus_F_contig13290:3111..33161695995713.6926382-UTR-E-fasciculatus_F_contig13290:3111..3316Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13290 3112..3316 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13290.2477.1prot_E-fasciculatus_F_contig13290.2477.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13290 2725..3111 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13290.2477.1

>prot_E-fasciculatus_F_contig13290.2477.1 ID=prot_E-fasciculatus_F_contig13290.2477.1|Name=mRNA_E-fasciculatus_F_contig13290.2477.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=129bp
SSIISIDLPQPADQGKCVSLRSEAINSSSFFSVACLRHRKTIQDATPKRR
DFLPHLCHEKKSNLALWTDNPGAKAVCGTPTTRPFFSNKQDYWNAWVGYS
GNLLFRTSRRTSIRASIQVSLSCLRSPP*
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mRNA from alignment at E-fasciculatus_F_contig13290:2725..3316+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13290.2477.1 ID=mRNA_E-fasciculatus_F_contig13290.2477.1|Name=mRNA_E-fasciculatus_F_contig13290.2477.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=592bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13290:2725..3316+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCTTCAATCATTAGCATCGACCTCCCACAACCGGCTGACCAAGGAAAATG
CGTCAGTCTTAGAAGCGAGGCAATAAACTCGAGCTCGTTTTTTAGTGTTG
CGTGTTTGCGACACCGGAAGACAATTCAAGACGCAACTCCCAAACGTCGA
GATTTCCTCCCTCACTTGTGTCATGAAAAAAAGAGCAACCTTGCCTTGTG
GACAGACAACCCCGGAGCTAAGGCTGTCTGTGGCACACCAACCACCCGCC
CATTTTTCTCCAATAAACAGGACTATTGGAATGCTTGGGTAGGGTATTCG
GGTAATCTGCTCTTCCGTACCTCTAGACGTACAAGTATCCGTGCATCGAT
ACAAGTCTCTCTCTCATGCTTGAGATCACCCCCATGACCACCACCAGACA
CAAAGCGACTTCACAGCAACTCGAGGGGCGTAAAACCAACCCAACGCGAC
GCGGCGACACGCCGAACGTCGCCCGGGTCGCACTTCCACCGACACGCTGC
CGCCACGTTCTCCGCTGAGAGCAGAACAGACAACGGTTTTCCCGTGGAGA
CGAACACCGACTCACTCCACATCCCAGACCCGCATTACACCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13290:2725..3316+

>mRNA_E-fasciculatus_F_contig13290.2477.1 ID=mRNA_E-fasciculatus_F_contig13290.2477.1|Name=mRNA_E-fasciculatus_F_contig13290.2477.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=774bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13290:2725..3316+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCTTCAATCATTAGCATCGACCTCCCACAACCGGCTGACCAAGGAAAATG
CGTCAGTCTTAGAAGCGAGGCAATAAACTCGAGCTCGTTTTTTAGTGTTG
CGTGTTTGCGACACCGGAAGACAATTCAAGACGCAACTCCCAAACGTCGA
GATTTCCTCCCTCACTTGTGTCATGAAAAAAAGAGCAACCTTGCCTTGTG
GACAGACAACCCCGGAGCTAAGGCTGTCTGTGGCACACCAACCACCCGCC
CATTTTTCTCCAATAAACAGGACTATTGGAATGCTTGGGTAGGGTATTCG
GGTAATCTGCTCTTCCGTACCTCTAGACGTACAAGTATCCGTGCATCGAT
ACAAGTCTCTCTCTCATGCTTGAGATCACCCCCATGATCTTCAATCATTA
GCATCGACCTCCCACAACCGGCTGACCAAGGAAAATGCGTCAGTCTTAGA
AGCGAGGCAATAAACTCGAGCTCGTTTTTTAGTGTTGCGTGTTTGCGACA
CCGGAAGACAATTCAAGACGCAACTCCCAAACGTCGAGATTTCCTCCCTC
ACTTGTGTCATGAAAAAAAGAGCAACCTTGCCTTGTGGACAGACAACCCC
GGAGCTAAGGCTGTCTGTGGCACACCAACCACCCGCCCATTTTTCTCCAA
TAAACAGGACTATTGGAATGCTTGGGTAGGGTATTCGGGTAATCTGCTCT
TCCGTACCTCTAGACGTACAAGTATCCGTGCATCGATACAAGTCTCTCTC
TCATGCTTGAGATCACCCCCATGA
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