mRNA_E-fasciculatus_F_contig13286.2472.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13286.2472.1
Unique NamemRNA_E-fasciculatus_F_contig13286.2472.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13286.2472.1 vs. uniprot
Match: A0A6H5KH56_9PHAE (PHD domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH56_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 7.990e-57
Identity = 167/184 (90.76%), Postives = 172/184 (93.48%), Query Frame = 1 
Query:    4 GGSKSNAHSPAGVQPSAPAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCLRRSPEDLAREASEILADADRAMLQLEPWCLAIDNSNLGDEGDGAAERGESNTAPWILAVRWWWLKGIRARQGGQAEEALEHFRRCESALRGRGREQRAQ 555
            GGSKSNAHS AGVQPSAP G    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    CLRRSPEDLAREASEILADADRA+LQLEPWCLAIDNSNLGD+GDGAA+ GESNTAPW+LAVRWWWLKGIRARQGGQAEEALEHF RCESALRGRGREQ+AQ
Sbjct:  694 GGSKSNAHSLAGVQPSAPVGGANPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----CLRRSPEDLAREASEILADADRAILQLEPWCLAIDNSNLGDDGDGAAKHGESNTAPWVLAVRWWWLKGIRARQGGQAEEALEHFHRCESALRGRGREQQAQ 873
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BLAST of mRNA_E-fasciculatus_F_contig13286.2472.1 vs. uniprot
Match: D7FMA3_ECTSI (PHD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMA3_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 2.840e-56
Identity = 166/184 (90.22%), Postives = 169/184 (91.85%), Query Frame = 1 
Query:    4 GGSKSNAHSPAGVQPSAPAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCLRRSPEDLAREASEILADADRAMLQLEPWCLAIDNSNLGDEGDGAAERGESNTAPWILAVRWWWLKGIRARQGGQAEEALEHFRRCESALRGRGREQRAQ 555
            GGSKSNAHSPAGVQPSAP G    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    CLRRSPEDLAREAS+ILADADRAMLQLEPWCLAIDNSNLGD+GDGAA  GESNTAPW+L VRWWWLKGIRARQGGQAEEALEHF  CE ALRGRGREQRAQ
Sbjct:  626 GGSKSNAHSPAGVQPSAPVGGADPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----CLRRSPEDLAREASDILADADRAMLQLEPWCLAIDNSNLGDDGDGAAGHGESNTAPWVLVVRWWWLKGIRARQGGQAEEALEHFHLCERALRGRGREQRAQ 805
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13286.2472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KH56_9PHAE7.990e-5790.76PHD domain-containing protein (Fragment) n=1 Tax=E... [more]
D7FMA3_ECTSI2.840e-5690.22PHD domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13286contigE-fasciculatus_F_contig13286:897..1834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size628
Cds size627
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927830.9375632-CDS-E-fasciculatus_F_contig13286:897..11481622927830.9375632-CDS-E-fasciculatus_F_contig13286:897..1148Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13286 898..1148 -
1695995713.349372-CDS-E-fasciculatus_F_contig13286:897..11481695995713.349372-CDS-E-fasciculatus_F_contig13286:897..1148Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13286 898..1148 -
1622927830.953694-CDS-E-fasciculatus_F_contig13286:1458..18341622927830.953694-CDS-E-fasciculatus_F_contig13286:1458..1834Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13286 1459..1834 -
1695995713.3648655-CDS-E-fasciculatus_F_contig13286:1458..18341695995713.3648655-CDS-E-fasciculatus_F_contig13286:1458..1834Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13286 1459..1834 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13286.2472.1prot_E-fasciculatus_F_contig13286.2472.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13286 898..1834 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13286.2472.1

>prot_E-fasciculatus_F_contig13286.2472.1 ID=prot_E-fasciculatus_F_contig13286.2472.1|Name=mRNA_E-fasciculatus_F_contig13286.2472.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=209bp
TGGSKSNAHSPAGVQPSAPAGGGANPPAAAAAAVTAAAAPAGTAGAAATP
AAASAPTAVVATDGAAAEVGGKKNEGAGGGGGGGCLRRSPEDLAREASEI
LADADRAMLQLEPWCLAIDNSNLGDEGDGAAERGESNTAPWILAVRWWWL
KGIRARQGGQAEEALEHFRRCESALRGRGREQRAQRSGGASSGQEEEKGD
DDNGEDEEE
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mRNA from alignment at E-fasciculatus_F_contig13286:897..1834-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13286.2472.1 ID=mRNA_E-fasciculatus_F_contig13286.2472.1|Name=mRNA_E-fasciculatus_F_contig13286.2472.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=938bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13286:897..1834- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACTGGCGGCAGCAAGAGCAACGCGCACAGCCCTGCGGGTGTGCAGCCGTC
GGCGCCGGCGGGTGGCGGCGCAAATCCTCCCGCGGCGGCGGCAGCGGCGG
TGACCGCAGCCGCTGCTCCGGCGGGAACGGCGGGAGCAGCGGCAACCCCT
GCGGCGGCATCGGCGCCGACAGCCGTGGTTGCGACGGACGGCGCTGCTGC
CGAGGTTGGCGGCAAGAAGAACGAGGGTGCAGGCGGAGGAGGAGGGGGAG
GGTGTCTGCGCAGGTCTCCGGAAGACCTCGCCAGGGAGGCCTCGGAGATT
CTCGCAGACGCTGACAGGGCCATGCTCCAGCTGGAGCCCTGGTGCTTGGC
TATCGACAACAGCAACCTTGGCGACGGTAGGCAGCAACAGAGGAAGCGGC
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGGCAT
AGAGCGAATAGATAGGCTTTGGGTTGTGGGCGGGGGAGGGGGGGAACTGG
CACCTTCTTGACATGTTGGCAGAGCTCGTAATCTTTCTTGAGCTGAATAG
GCGCGCACAGATCGAAGCTTGTGATGGCTACAGCAGTACTACCGAGAAAA
CGTTGTTATCTGAGTCATGTAGTCATGTACCCTCCTCCCTAACCCTCTAC
GCCTGGGATGTATCGAATCGCTCTTGACGGCTGAAGAAGGCGATGGTGCC
GCGGAGCGCGGAGAGTCGAACACCGCACCGTGGATACTGGCGGTGCGGTG
GTGGTGGCTGAAGGGCATACGAGCGAGGCAAGGCGGCCAAGCGGAAGAAG
CCCTGGAGCACTTCCGCCGCTGCGAGAGCGCCCTGCGGGGCAGGGGAAGA
GAACAGCGGGCGCAGCGGAGTGGCGGCGCGAGCAGCGGGCAAGAGGAGGA
GAAGGGCGACGACGACAACGGCGAGGACGAGGAGGAAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13286:897..1834-

>mRNA_E-fasciculatus_F_contig13286.2472.1 ID=mRNA_E-fasciculatus_F_contig13286.2472.1|Name=mRNA_E-fasciculatus_F_contig13286.2472.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1254bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13286:897..1834- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACTGGCGGCAGCAAGAGCAACGCGCACAGCCCTGCGGGTGTGCAGCCGTC
GGCGCCGGCGGGTGGCGGCGCAAATCCTCCCGCGGCGGCGGCAGCGGCGG
TGACCGCAGCCGCTGCTCCGGCGGGAACGGCGGGAGCAGCGGCAACCCCT
GCGGCGGCATCGGCGCCGACAGCCGTGGTTGCGACGGACGGCGCTGCTGC
CGAGGTTGGCGGCAAGAAGAACGAGGGTGCAGGCGGAGGAGGAGGGGGAG
GGTGTCTGCGCAGGTCTCCGGAAGACCTCGCCAGGGAGGCCTCGGAGATT
CTCGCAGACGCTGACAGGGCCATGCTCCAGCTGGAGCCCTGGTGCTTGGC
TATCGACAACAGCAACCTTGGCGACGACTGGCGGCAGCAAGAGCAACGCG
CACAGCCCTGCGGGTGTGCAGCCGTCGGCGCCGGCGGGTGGCGGCGCAAA
TCCTCCCGCGGCGGCGGCAGCGGCGGTGACCGCAGCCGCTGCTCCGGCGG
GAACGGCGGGAGCAGCGGCAACCCCTGCGGCGGCATCGGCGCCGACAGCC
GTGGTTGCGACGGACGGCGCTGCTGCCGAGGTTGGCGGCAAGAAGAACGA
GGGTGCAGGCGGAGGAGGAGGGGGAGGGTGTCTGCGCAGGTCTCCGGAAG
ACCTCGCCAGGGAGGCCTCGGAGATTCTCGCAGACGCTGACAGGGCCATG
CTCCAGCTGGAGCCCTGGTGCTTGGCTATCGACAACAGCAACCTTGGCGA
CGAAGGCGATGGTGCCGCGGAGCGCGGAGAGTCGAACACCGCACCGTGGA
TACTGGCGGTGCGGTGGTGGTGGCTGAAGGGCATACGAGCGAGGCAAGGC
GGCCAAGCGGAAGAAGCCCTGGAGCACTTCCGCCGCTGCGAGAGCGCCCT
GCGGGGCAGGGGAAGAGAACAGCGGGCGCAGCGGAGTGGCGGCGCGAGCA
GCGGGCAAGAGGAGGAGAAGGGCGACGACGACAACGGCGAGGACGAGGAG
GAAAAGGCGATGGTGCCGCGGAGCGCGGAGAGTCGAACACCGCACCGTGG
ATACTGGCGGTGCGGTGGTGGTGGCTGAAGGGCATACGAGCGAGGCAAGG
CGGCCAAGCGGAAGAAGCCCTGGAGCACTTCCGCCGCTGCGAGAGCGCCC
TGCGGGGCAGGGGAAGAGAACAGCGGGCGCAGCGGAGTGGCGGCGCGAGC
AGCGGGCAAGAGGAGGAGAAGGGCGACGACGACAACGGCGAGGACGAGGA
GGAA
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