mRNA_E-fasciculatus_F_contig13279.2467.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig13279.2467.1 vs. uniprot
Match: D8LEE1_ECTSI (NADH:ubiquinone oxidoreductase complex I n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEE1_ECTSI) HSP 1 Score: 481 bits (1237), Expect = 5.130e-166 Identity = 239/248 (96.37%), Postives = 245/248 (98.79%), Query Frame = 1
Query: 1 IIVQSGVDVRDEATLKNKALFEGVTQVVSALGPRFGEEGSSSEAVDFQGVQSAIEAAEAFLEPGDGCSAAPGDEERILVAPGDSGSDERGPGGAWQPLDDVIMGGRSSSAWQKGVGGGVLERQSGKTFGRWAGTLVTEGGGFCGTVIKDMPFDATGYDGIRIRVRGDGSRYKFRLKPDTKLDNTAERQYQAPFDTVKGEWVEVDIPFESFVAVKRNYVDFNAPRVNEGPAGGKMLSLGLVLSRFGFNE 744
+ VQSGVDVRDEATLKNKALF+GVTQVVSALGPRFGEEGSSSEAVDFQGVQSAIEAAEAFLE GDG SAAPGD+ER+LVAPGDSGSDERGPGGAWQPLDDVIMGGRSSSAWQKGVGGGVLERQSGKTFGRWAGTLVTEGGGFCGTVIKDMPFDATGYDGIRIRVRGDGSRYKFRLKPDTKLDNTAERQYQAPFDTVKGEW+EVD+PFESFVAVKRNYVDFNAPRVNEGPAGGKMLSLGLVLSRFGFNE
Sbjct: 141 LFVQSGVDVRDEATLKNKALFDGVTQVVSALGPRFGEEGSSSEAVDFQGVQSAIEAAEAFLEQGDGSSAAPGDQERVLVAPGDSGSDERGPGGAWQPLDDVIMGGRSSSAWQKGVGGGVLERQSGKTFGRWAGTLVTEGGGFCGTVIKDMPFDATGYDGIRIRVRGDGSRYKFRLKPDTKLDNTAERQYQAPFDTVKGEWIEVDLPFESFVAVKRNYVDFNAPRVNEGPAGGKMLSLGLVLSRFGFNE 388
BLAST of mRNA_E-fasciculatus_F_contig13279.2467.1 vs. uniprot
Match: A0A836CBF4_9STRA (NADH:ubiquinone oxidoreductase complex I n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBF4_9STRA) HSP 1 Score: 207 bits (528), Expect = 3.550e-60 Identity = 122/246 (49.59%), Postives = 153/246 (62.20%), Query Frame = 1
Query: 7 VQSGVDVRDEATLKNKALFEGVTQVVSALGPRFGEEGSSSEAVDFQGVQSAIEAAEAFLEPGDGCSAAPGDEERILVAPGDSGSDERGPGGAWQPLDDVIMGGRSSSAWQKGVGGGVLERQSGKTFGRWAGTLVTEGGGFCGTVIKDMPFDATGYDGIRIRVRGDGSRYKFRLKPDTKLDNTAERQYQAPFDTVKGEWVEVDIPFESFVAVKRNYVDFNAPRVNEGPAGGKMLSLGLVLSRFGFNE 744
V+ G+DV E + FEGVTQVVS LGP F + ++EAVD++G + + A E G +AA L D S P W PLDDVIMGG+SSSAW G + F RW+G LVT+GGGFCGTV+K + FD GYDGIR+ VRGDGSR+KFRLKP + E QYQA FDTV G WV ++PF +F AV+RN V + AP V++GP+G KM S+G+VLSRF +NE
Sbjct: 115 VKEGLDVTAEEI--PETFFEGVTQVVSCLGPSFSDPALNAEAVDYRGNAAVLRACE---RAGLASTAAAAAASAPLC---DFASGASLP--EWAPLDDVIMGGKSSSAWDAAAGD--------RDFARWSGELVTDGGGFCGTVVKKLNFDTAGYDGIRLVVRGDGSRFKFRLKP-ADMAQANEYQYQASFDTVDGAWVTAELPFSAFTAVRRNDVIYAAPPVDKGPSGTKMSSIGIVLSRFEYNE 341
BLAST of mRNA_E-fasciculatus_F_contig13279.2467.1 vs. uniprot
Match: A0A383VFN0_TETOB (Uncharacterized protein n=3 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VFN0_TETOB) HSP 1 Score: 152 bits (384), Expect = 8.540e-39 Identity = 110/259 (42.47%), Postives = 141/259 (54.44%), Query Frame = 1
Query: 1 IIVQSGVDVRDEATLKNKALFEGVTQVVSALGPRFGE---------EGSSSEAVDFQGVQSAIEAAEAFLEPGDGCSAAPGDEERILVAPGDSGSDERGPGGAWQPLDDVIMGGRSSSAWQKGVGGGVLERQSGKTFGRWAGTLVTEGGGFCGTVIKDMPFDATGYDGIRIRVRGDGSRYKFRLKPDTKLDNTAERQYQAPFDTV-KGEWVEVDIPFESFVAVKRNYVDFNAPRVNEGPAGGKMLS-LGLVLSRFGFNE 744
+I +GVDV + ATL + LFEGVTQVVSALGP G +G S E V+ QG+ + + A + G ++A + P S D AW+ LDDVIMGG SSSA LE + + W G LV EGGGFCG K + D +GYDG+++RV+GDG +KF +K D D T E YQA FDT +G+W V +P+ SFV VK+ D N GP +S LGLVLSRF FN+
Sbjct: 169 LITAAGVDVTNPATLSAE-LFEGVTQVVSALGPVAGRLPDGSFGYIDGMSPERVETQGMANIVAA---LAKHAPGIASAGSGISSSSILPMASAEDLA----AWERLDDVIMGGNSSSA---------LEAAADGSGAVWKGDLVVEGGGFCGARTKALDMDLSGYDGLQLRVKGDGQIFKFNIKTDQ--DATPESTYQATFDTSPEGDWTTVRLPWSSFVPVKQAQSD-----PNRGPLDPARISKLGLVLSRFEFNK 403
BLAST of mRNA_E-fasciculatus_F_contig13279.2467.1 vs. uniprot
Match: A0A0D2N0U4_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2N0U4_9CHLO) HSP 1 Score: 142 bits (357), Expect = 2.410e-35 Identity = 108/259 (41.70%), Postives = 138/259 (53.28%), Query Frame = 1
Query: 1 IIVQSGVDVRDEATLKNKALFEGVTQVVSALGPRFGE---------EGSSSEAVDFQGVQSAIEAAEAFLEPGDGCSAAPGDEERILVAPGDSGSDERGPGGAWQPLDDVIMGGRSSSAWQKGVGGGVLERQSGKTFGRWAGTLVTEGGGFCGTVIKDMPFDATGYDGIRIRVRGDGSRYKFRLKPDTKLDNTAERQYQAPFDTVK-GEWVEVDIPFESFVAVKRNYVDFNAPRVNEGPAGGKMLS-LGLVLSRFGFNE 744
+ VQ+GVDV DE+TL LF GVTQVVSALG G +G + EAV+ +G+ + + A + L AP V P + D AW+ LDDVIMGG SSS LE SG W G LV EGGGFCG + + D + +DG+R+RV+GDG +KF +K + D T E YQA FDT + G+W V +P+ SFV VKR D P G+ +S LGLVLSRF FN+
Sbjct: 86 LFVQAGVDVTDESTL-TPDLFAGVTQVVSALGGVTGRLPDGTFGYLDGMTPEAVEAKGMANVVAAMKQHL--------APQIRTTQEVLPMRTAEDLE----AWERLDDVIMGGSSSSGLT------ALEDGSGAA---WKGDLVVEGGGFCGARTRKLGLDLSQFDGLRMRVKGDGQTFKFNIKTADQED-TPESTYQATFDTSEEGDWTTVHLPWHSFVPVKRAQSDPQGE-----PLRGEAISKLGLVLSRFEFNK 316
BLAST of mRNA_E-fasciculatus_F_contig13279.2467.1 vs. uniprot
Match: A0A7S0RVS4_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RVS4_9CHLO) HSP 1 Score: 139 bits (350), Expect = 3.960e-35 Identity = 102/254 (40.16%), Postives = 135/254 (53.15%), Query Frame = 1
Query: 7 VQSGVDVRDEATLKNKALFEGVTQVVSALGPRFGE---------EGSSSEAVDFQGVQSAIEAAEAFLEPGDGCSAAPGDEERILVAPGDSGSDERGPGGAWQPLDDVIMGGRSSSAWQKGVGGGVLERQSGKTFGRWAGTLVTEGGGFCGTVIKDMPFDATGYDGIRIRVRGDGSRYKFRLKPDTKLDNTAERQYQAPFDTVKGEWVEVDIPFESFVAVKRNYVDFNAPRVNEGPAGGKMLSLGLVLSRFGFN 741
V+SGVD+ + TL + LF GV+QVV+ LGP FG + +SE V+ GV++ + + L P ++R L+ + W+ LDDVIMGGRSSS W+ GV G W G LV EGGGFCGT + P DGI +RV+GDG RYK L+ + D E YQA FDTV+G+W+ VDIPF FVAV+R D NAP ++ P+ +S +LSRF N
Sbjct: 197 VKSGVDITNVDTL-TEDLFRGVSQVVNTLGPVFGRLPDGGFGYFDDMTSERVESLGVRNIVSTVQREL-------GVPQRQDRELLTINSTAKVS-----LWERLDDVIMGGRSSSGWEFDESAGV---------GVWKGQLVLEGGGFCGTRRRVDPRGFEQSDGICLRVKGDGQRYKVSLRTPSP-DGMHECLYQAGFDTVEGQWMTVDIPFGEFVAVRRGNEDRNAPPLD--PSAIDRISF--LLSRFELN 423
BLAST of mRNA_E-fasciculatus_F_contig13279.2467.1 vs. uniprot
Match: A0A7S3QMA4_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QMA4_DUNTE) HSP 1 Score: 141 bits (355), Expect = 6.960e-35 Identity = 96/258 (37.21%), Postives = 136/258 (52.71%), Query Frame = 1
Query: 1 IIVQSGVDVRDEATLKNKALFEGVTQVVSALGPRFGEE---------GSSSEAVDFQGVQSAIEAAEAFLEPGDGCSAAPGDEERILVAPGDSGSDERGPGGAWQPLDDVIMGGRSSSAWQKGVGGGVLERQSGKTFGRWAGTLVTEGGGFCGTVIKD-MPFDATGYDGIRIRVRGDGSRYKFRLKPDTKLDNTAERQYQAPFDTVKGEWVEVDIPFESFVAVKRNYVDFNAPRVNEGPAGGKMLSLGLVLSRFGFNE 744
+ ++GVDV TL+ L++GVTQVV+ LG +FG++ G + EAV+ GVQ+ + A + G + + P +G W +DDVIMGG+SSS W+ G RW G L+ EGGGFCG K M D + YDGI +RV+GDG +K +K ++D T E YQA FDTV G+W +V +P+ +FV VKR D + ++ K++ LG VLSRF FN+
Sbjct: 172 LFYETGVDVTKPETLRRPELWKGVTQVVTCLGGKFGKQPDGSMGYIDGCTPEAVEALGVQNLVAAMSEQVPKQTGV-------QYQAMMPEAAGEQVA----MWDRMDDVIMGGQSSSLWEPAP-------DEGPHVARWKGDLIVEGGGFCGARTKPLMQTDWSAYDGIALRVKGDGQIFKLNIKTLEQVD-TPESTYQATFDTVDGQWHDVLLPWHNFVPVKRAQSDPDGAPLDPS----KIVKLGTVLSRFEFNK 406
BLAST of mRNA_E-fasciculatus_F_contig13279.2467.1 vs. uniprot
Match: A0A7S1SQV2_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SQV2_9CHLO) HSP 1 Score: 140 bits (352), Expect = 2.090e-34 Identity = 100/252 (39.68%), Postives = 139/252 (55.16%), Query Frame = 1
Query: 16 GVDVRDEATLKNKALFEGVTQVVSALGPRFGEE---------GSSSEAVDFQGVQSAIEAAEAFLEP-GDGCSAAPGDEERILVAPGDSGSDERGPGGAWQPLDDVIMGGRSSSAWQKGVGGGVLERQSGKTFGRWAGTLVTEGGGFCGTVIKDMPFDATGYDGIRIRVRGDGSRYKFRLKPDTKLDNTAERQYQAPFDTVKGEWVEVDIPFESFVAVKRNYVDFNAPRVNEGPAGGKMLSLGLVLSRFGFN 741
GVD+ TL ++ LF GV QVV+A+GPRFG++ GSS VD +GV + + AA+A L G SAA E + +A + W+PL+DVIMGG+SSS + G + G W+GT++ EGGGFCG + +DGIR+RV+G G R+K LK + ++D E YQA F+TV+GEWVEV +P+ F VKR D + P ++ + +GLV SRF FN
Sbjct: 204 GVDISRPETL-SRELFRGVAQVVAAVGPRFGKQADGSMGFGAGSSPAEVDAEGVAALVAAAQAHLPSVGTRRSAA----EVLSLATEEDVQ-------RWRPLNDVIMGGQSSSGMELLTNG-----EDGSAV--WSGTVIVEGGGFCGLRTEPADLKLDDFDGIRLRVKGGGQRFKLNLKTEEQMD-VPESTYQACFNTVEGEWVEVFLPWHEFRCVKRASFDPSGPPLDPT----HVRQVGLVYSRFEFN 431
BLAST of mRNA_E-fasciculatus_F_contig13279.2467.1 vs. uniprot
Match: A0A2V0P7E0_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P7E0_9CHLO) HSP 1 Score: 139 bits (350), Expect = 4.050e-34 Identity = 99/258 (38.37%), Postives = 136/258 (52.71%), Query Frame = 1
Query: 1 IIVQSGVDVRDEATLKNKALFEGVTQVVSALGPRFGE---------EGSSSEAVDFQGVQSAIEAAEAFLEPGDGCSAAPGDEERILVAPGDSGSDERGPGGAWQPLDDVIMGGRSSSAWQKGVGGGVLERQSGKTFGRWAGTLVTEGGGFCGTVIKDMPFDATGYDGIRIRVRGDGSRYKFRLKPDTKLDNTAERQYQAPFDTVK-GEWVEVDIPFESFVAVKRNYVDFNAPRVNEGPAGGKMLSLGLVLSRFGFNE 744
+ V +GVDV E TL + LF GVTQVVSALG G +G + EAV+ +G+ + + A F+ P S ++++ + E AW+ LDDVIMGG SSS GG E W G L+ EGGGFCG + + D +G+DG+++RV+ DG +K +K + D T E YQA FDT + G+W V +P+ +FV VKR D P+ E G + LGLVLSRF FN+
Sbjct: 174 LFVDAGVDVTKEETLTEE-LFRGVTQVVSALGGVAGRLPDGGFGYLDGMTPEAVEAKGIANVVAAMARFMAPAKRAS-------EVVLSMRTAEDLE-----AWERLDDVIMGGSSSSGLGPAADGGGAE---------WKGDLIVEGGGFCGARTRKLGLDLSGFDGLQLRVKSDGQTFKLNVKTADQED-TPESTYQATFDTAEDGDWSTVRLPWHTFVPVKRAQSD---PQ-GEPLTGDSISKLGLVLSRFEFNK 404
BLAST of mRNA_E-fasciculatus_F_contig13279.2467.1 vs. uniprot
Match: A0A5J4Y258_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y258_9CHLO) HSP 1 Score: 138 bits (348), Expect = 7.840e-34 Identity = 97/257 (37.74%), Postives = 136/257 (52.92%), Query Frame = 1
Query: 19 VDVRDEATLKNKALFEGVTQVVSALGPRFGEE---------GSSSEAVDFQGVQSAIEAAEAFLEPGDGCSAAPGDEERILVAPGDSGSDERGPGGAWQPLDDVIMGGRSSSAWQK-----GVGGGVLERQSGKTFGR-WAGTLVTEGGGFCGTVIKDMPFDATGYDGIRIRVRGDGSRYKFRLKPDTKLDNTAERQYQAPFDTVKGEWVEVDIPFESFVAVKRNYVDFNAPRVNEGPAGGKMLSLGLVLSRFGFNE 744
VD+ D A L +K L++G++QVV+ +GP FG + +SE VD +G+ + +AAE FL + E++L S +D W+ LDD IMGG+S S Q G G ++Q G W G +T+GGGFCG K + + +DGI +RV+GDG YKF LK ++ N E YQA +DT+ GEWV V +P+ FV V R D A ++ PA K + GLVLSRF +N
Sbjct: 181 VDITDSAALMSKELWQGISQVVTTVGPAFGRQPDGGMGYIDNMTSERVDAEGISNIAKAAEHFLP----AQRFQPEVEQVLSMR--SAADLE----VWEKLDDTIMGGKSGSYLQTAEDLHGFQGDYKDKQPYDFEGSVWRGETITDGGGFCGARTKMLDLNLQRFDGISLRVKGDGQTYKFNLKTADQM-NVPESTYQAQYDTIDGEWVTVYMPWHEFVPVTRAQYDSKAKPLD--PAQVKQI--GLVLSRFHYNS 422
BLAST of mRNA_E-fasciculatus_F_contig13279.2467.1 vs. uniprot
Match: A0A4D9DB39_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DB39_9STRA) HSP 1 Score: 136 bits (342), Expect = 4.500e-33 Identity = 106/274 (38.69%), Postives = 141/274 (51.46%), Query Frame = 1
Query: 13 SGVDVRDEATLKN---KALFEGVTQVVSALGPRFGEE---------GSSSEAVDFQGVQSAIEAA--------EAFLEPGDGCSAAPGDEERILVAPGDSGSDERGPGGAWQPLDDVIMGGRSSSAWQKGVGGGVLERQSGKTFGRWAGTLVTEGGGFCGTVIK--DMPFDATGYDGIRIRVRGDGSRYKFRLKPDTKLDNTAERQYQAPFDTVK--------GEWVEVDIPFESFVAVKRNYVDFNAPRVNEGPAGGKMLSLGLVLSRFGFNE 744
SG+DV + ATL + A+ + + VV ALGP G + G +SE VDF+GV I+A E E G +A +E + + ++ D WQ LDDVIMGG+SSS+ + L+R+ G + + G+LV EGGGFCGT D P D +G+DG+ +RVRGDG RYK LK L +E YQA FDT+ G W + IPF F V RN VD+ A + P+ +SLGLV SRF FN
Sbjct: 81 SGIDVTNAATLSSGNVPAVLKEASHVVVALGPVGGVQPGGGFGFFPGLTSEDVDFKGVTKVIDAVVDAKGVVKEGAGEGGKKQAAGEVEERKRTLFRFETPEDVA----KWQRLDDVIMGGQSSSSLE-------LDREKG--YATYTGSLVVEGGGFCGTRASGGDAPVDLSGFDGVTLRVRGDGHRYKLNLKTTETL--ASENVYQAAFDTLPLQDAGEGAGGWQTITIPFHRFYPVVRNRVDYKAAPLQ--PSSQAAVSLGLVYSRFEFNR 337 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13279.2467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13279.2467.1 >prot_E-fasciculatus_F_contig13279.2467.1 ID=prot_E-fasciculatus_F_contig13279.2467.1|Name=mRNA_E-fasciculatus_F_contig13279.2467.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=248bp IIVQSGVDVRDEATLKNKALFEGVTQVVSALGPRFGEEGSSSEAVDFQGVback to top mRNA from alignment at E-fasciculatus_F_contig13279:286..3625- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig13279.2467.1 ID=mRNA_E-fasciculatus_F_contig13279.2467.1|Name=mRNA_E-fasciculatus_F_contig13279.2467.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3340bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13279:286..3625- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13279:286..3625- >mRNA_E-fasciculatus_F_contig13279.2467.1 ID=mRNA_E-fasciculatus_F_contig13279.2467.1|Name=mRNA_E-fasciculatus_F_contig13279.2467.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1488bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13279:286..3625- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |