mRNA_E-fasciculatus_F_contig13278.2466.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13278.2466.1
Unique NamemRNA_E-fasciculatus_F_contig13278.2466.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13278.2466.1 vs. uniprot
Match: D7G1L2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L2_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 1.690e-15
Identity = 41/50 (82.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 AAAATDHHPVTVSQQREFEALQDERHRDHEARFRELEGEISKATKRKGRR 150
            AA A DHHPVTVS+QREFEALQ+E+HR+HEAR RELEG+ISKAT RKGRR
Sbjct:  605 AARAADHHPVTVSEQREFEALQNEKHREHEARLRELEGQISKATIRKGRR 654
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BLAST of mRNA_E-fasciculatus_F_contig13278.2466.1 vs. uniprot
Match: D7FHA3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA3_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 8.120e-15
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 AAAATDHHPVTVSQQREFEALQDERHRDHEARFRELEGEISKATKRKGRR 150
            AA A DHHPVTVS+QREFEALQDE+HR+HEAR RELEG+I KAT R+GRR
Sbjct:  800 AARAVDHHPVTVSEQREFEALQDEKHREHEARLRELEGQIIKATIRQGRR 849
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BLAST of mRNA_E-fasciculatus_F_contig13278.2466.1 vs. uniprot
Match: A0A6H5KZF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF6_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 6.460e-13
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 AAAATDHHPVTVSQQREFEALQDERHRDHEARFRELEGEISKATKRK 141
            AA A D HPVTVS+QREFEALQDE+HR+HE RFRELEGEISK  +RK
Sbjct: 1109 AAGAADLHPVTVSEQREFEALQDEKHREHEERFRELEGEISKVARRK 1155
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BLAST of mRNA_E-fasciculatus_F_contig13278.2466.1 vs. uniprot
Match: D7FH89_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH89_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 1.640e-12
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 AAAATDHHPVTVSQQREFEALQDERHRDHEARFRELEGEISKATKR-KGR 147
            A  A DHHPVTV++QREFEALQ+E+H  HEAR RELEGEISKATKR KGR
Sbjct: 1095 ATTAADHHPVTVAEQREFEALQNEKHCGHEARLRELEGEISKATKREKGR 1144
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13278.2466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G1L2_ECTSI1.690e-1582.00Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7FHA3_ECTSI8.120e-1580.00Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KZF6_9PHAE6.460e-1378.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH89_ECTSI1.640e-1278.00Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13278contigE-fasciculatus_F_contig13278:1601..2357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue7.3e-13
Seed eggNOG ortholog2880.D7FHA3
EggNOG free text desc.Leucine rich repeat
EggNOG OGs2QVSR@2759,COG4886@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size262
Cds size153
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13278.2466.1prot_E-fasciculatus_F_contig13278.2466.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13278 1709..2357 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927830.268135-UTR-E-fasciculatus_F_contig13278:1600..17081622927830.268135-UTR-E-fasciculatus_F_contig13278:1600..1708Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13278 1601..1708 -
1695995712.9437811-UTR-E-fasciculatus_F_contig13278:1600..17081695995712.9437811-UTR-E-fasciculatus_F_contig13278:1600..1708Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13278 1601..1708 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927830.278383-CDS-E-fasciculatus_F_contig13278:1708..17191622927830.278383-CDS-E-fasciculatus_F_contig13278:1708..1719Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13278 1709..1719 -
1695995712.9557617-CDS-E-fasciculatus_F_contig13278:1708..17191695995712.9557617-CDS-E-fasciculatus_F_contig13278:1708..1719Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13278 1709..1719 -
1622927830.2901766-CDS-E-fasciculatus_F_contig13278:2215..23571622927830.2901766-CDS-E-fasciculatus_F_contig13278:2215..2357Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13278 2216..2357 -
1695995712.9650817-CDS-E-fasciculatus_F_contig13278:2215..23571695995712.9650817-CDS-E-fasciculatus_F_contig13278:2215..2357Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13278 2216..2357 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13278.2466.1

>prot_E-fasciculatus_F_contig13278.2466.1 ID=prot_E-fasciculatus_F_contig13278.2466.1|Name=mRNA_E-fasciculatus_F_contig13278.2466.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=51bp
AAAATDHHPVTVSQQREFEALQDERHRDHEARFRELEGEISKATKRKGRR
*
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mRNA from alignment at E-fasciculatus_F_contig13278:1601..2357-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13278.2466.1 ID=mRNA_E-fasciculatus_F_contig13278.2466.1|Name=mRNA_E-fasciculatus_F_contig13278.2466.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=757bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13278:1601..2357- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGGCGGCAGCGACTGACCACCATCCGGTGACTGTCTCTCAACAACGAGA
GTTCGAGGCACTGCAGGACGAAAGGCACAGGGACCACGAAGCGAGATTCA
GAGAGCTCGAGGGAGAGATCAGTAAGGCCACCAAACGAAAGGGTGAGTCA
GCTCGGCTGTTGACGTTTTCTTTTTTAGATTGCTTGGGTTTCCACCTGTC
TCATGGCCACTACTGTGCTGTAGACGAGCACACGGCTCTCTTGCTGGTGG
CTAAGGGCGTAATTTTGTTGAATTATATCCTGCCCATGTTTGCGTAAAGC
GCTCTTCCCATGCCGCAGCTGATCCTGCGCTGTTCCATGCGCTATCTTTG
CCCTGTCAAGATCTGCTTACCGATGTCAACTACTTCACAGGACGTATCGG
CGGTGGTGGTTAGGCTGACTTAATGGGTGATCATGGCTGTAGCAAAGTTT
TCCGACGACTCCTGTCGTACTACATATTTCTATGTATGGCGTGTCTTTGT
ATTTACTTTGCGAGTTGCTGATGTTGCTGGACGATTTCTCTTTGAGGACA
AAACGAATTGCTTGGGTTCTCAGAGTGCCGTTATGACATGAATGCTCTGT
CTGGCGTTCTCCCGTTTACCTTGTTGCCTCCATCTCAGGACGTCGATGAT
CCTCCATTCACTGGCGAGAGCGTAAGAAAGCCCTACAACAGCCCTTGATC
GTCGCTCGGATTACTTCAGCTCGAGTAATCTCTTTGCTGTGGTGTGTACG
GCTAGCT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13278:1601..2357-

>mRNA_E-fasciculatus_F_contig13278.2466.1 ID=mRNA_E-fasciculatus_F_contig13278.2466.1|Name=mRNA_E-fasciculatus_F_contig13278.2466.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=306bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13278:1601..2357- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGGCGGCAGCGACTGACCACCATCCGGTGACTGTCTCTCAACAACGAGA
GTTCGAGGCACTGCAGGACGAAAGGCACAGGGACCACGAAGCGAGATTCA
GAGAGCTCGAGGGAGAGATCAGTAAGGCCACCAAACGAAAGGGCGGCGGC
AGCGACTGACCACCATCCGGTGACTGTCTCTCAACAACGAGAGTTCGAGG
CACTGCAGGACGAAAGGCACAGGGACCACGAAGCGAGATTCAGAGAGCTC
GAGGGAGAGATCAGTAAGGCCACCAAACGAAAGGGACGTCGATGAGACGT
CGATGA
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