mRNA_E-fasciculatus_F_contig13277.2465.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13277.2465.1
Unique NamemRNA_E-fasciculatus_F_contig13277.2465.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13277.2465.1 vs. uniprot
Match: D8LN90_ECTSI (UTP--glucose-1-phosphate uridylyltransferase n=4 Tax=Phaeophyceae TaxID=2870 RepID=D8LN90_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 1.680e-51
Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 1 
Query:    1 SIAKADEFEYKDPVDGSVASRQGIRILMSDGSRVVFRLSGTGSVGATIRMYIEKYEKDEDKLDQVPAEALSGLVALGLKLSQLRELTGRENPTVIT 288
            SIAKADEFEYKDPVDGS+ASRQGIRILMSDGSRVVFRLSGTGSVGATIRMYIEKYEKD DKLDQVP+EALSGLVALGLKLSQLRELTGRENPTVIT
Sbjct:  976 SIAKADEFEYKDPVDGSIASRQGIRILMSDGSRVVFRLSGTGSVGATIRMYIEKYEKDADKLDQVPSEALSGLVALGLKLSQLRELTGRENPTVIT 1071
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BLAST of mRNA_E-fasciculatus_F_contig13277.2465.1 vs. uniprot
Match: A0A836CGV2_9STRA (UTP--glucose-1-phosphate uridylyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGV2_9STRA)

HSP 1 Score: 149 bits (377), Expect = 6.870e-40
Identity = 76/96 (79.17%), Postives = 84/96 (87.50%), Query Frame = 1 
Query:    1 SIAKADEFEYKDPVDGSVASRQGIRILMSDGSRVVFRLSGTGSVGATIRMYIEKYEKDEDKLDQVPAEALSGLVALGLKLSQLRELTGRENPTVIT 288
            S+A ADEF Y DPVD SV++ QGIRILM+DGSRVVFRLSGTGSVGATIRMYIEKYE D  KLDQ PA+AL+GLVALGLKLS+L E T RE+PTVIT
Sbjct:  987 SVALADEFTYHDPVDASVSANQGIRILMADGSRVVFRLSGTGSVGATIRMYIEKYESDAAKLDQAPADALAGLVALGLKLSKLTEFTKRESPTVIT 1082
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BLAST of mRNA_E-fasciculatus_F_contig13277.2465.1 vs. uniprot
Match: A0A392MU22_9FABA (Phosphoglucomutase n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MU22_9FABA)

HSP 1 Score: 129 bits (324), Expect = 1.260e-36
Identity = 63/96 (65.62%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:    1 SIAKADEFEYKDPVDGSVASRQGIRILMSDGSRVVFRLSGTGSVGATIRMYIEKYEKDEDKLDQVPAEALSGLVALGLKLSQLRELTGRENPTVIT 288
            ++   DEFEYKDPVDGSV+S QGIR L  DGSR++FRLSGTGS GATIR+YIE+YEKD  K+ ++  EAL+ LVA  LKLS++ E TGR  PTVIT
Sbjct:   37 NVVHGDEFEYKDPVDGSVSSHQGIRYLFEDGSRLIFRLSGTGSEGATIRLYIEQYEKDPSKIGRLSHEALAPLVAAALKLSKMEEFTGRSAPTVIT 132
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BLAST of mRNA_E-fasciculatus_F_contig13277.2465.1 vs. uniprot
Match: I3ST63_LOTJA (Uncharacterized protein n=1 Tax=Lotus japonicus TaxID=34305 RepID=I3ST63_LOTJA)

HSP 1 Score: 130 bits (327), Expect = 3.710e-36
Identity = 62/96 (64.58%), Postives = 77/96 (80.21%), Query Frame = 1 
Query:    1 SIAKADEFEYKDPVDGSVASRQGIRILMSDGSRVVFRLSGTGSVGATIRMYIEKYEKDEDKLDQVPAEALSGLVALGLKLSQLRELTGRENPTVIT 288
            ++  ADEFEYKDPVDGS++S QGIR    DGSR++FRLSGTGSVGATIR+YIE+YEKD  K+ ++  EAL+ LV + LKLS++ E TGR  PTVIT
Sbjct:  111 NVVNADEFEYKDPVDGSISSHQGIRYFFEDGSRLIFRLSGTGSVGATIRLYIEQYEKDPSKIGRLSHEALAPLVEVALKLSKMEEFTGRSAPTVIT 206
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BLAST of mRNA_E-fasciculatus_F_contig13277.2465.1 vs. uniprot
Match: A0A5N5GGS2_9ROSA (Phosphoglucomutase n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5GGS2_9ROSA)

HSP 1 Score: 127 bits (320), Expect = 6.100e-36
Identity = 62/96 (64.58%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:    1 SIAKADEFEYKDPVDGSVASRQGIRILMSDGSRVVFRLSGTGSVGATIRMYIEKYEKDEDKLDQVPAEALSGLVALGLKLSQLRELTGRENPTVIT 288
            ++  ADEFEY DPVDGS++  QGIR L  DGSR+VFRLSGTGS GATIR+YIE+YEKD  K+ +  +EALS LV + LKLS+++E TGR  PTVIT
Sbjct:   43 NVVNADEFEYTDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKIGRESSEALSPLVEVALKLSKMQEFTGRSAPTVIT 138
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BLAST of mRNA_E-fasciculatus_F_contig13277.2465.1 vs. uniprot
Match: A0A7S2Y0U8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0U8_9STRA)

HSP 1 Score: 129 bits (325), Expect = 7.050e-36
Identity = 66/96 (68.75%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:    1 SIAKADEFEYKDPVDGSVASRQGIRILMSDGSRVVFRLSGTGSVGATIRMYIEKYEKDEDKLDQVPAEALSGLVALGLKLSQLRELTGRENPTVIT 288
            +I+K DEF Y+DPVDGS  S+QGIRIL +DGSRVVFRLSGTGSVGATIR+YIEKYE D +K    P   L GLV  GLKL++L E TGR+ PTVIT
Sbjct:  109 TISKIDEFGYEDPVDGSSTSKQGIRILFTDGSRVVFRLSGTGSVGATIRIYIEKYEGDANKQAYPPQYMLEGLVEAGLKLAKLEEFTGRKEPTVIT 204
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BLAST of mRNA_E-fasciculatus_F_contig13277.2465.1 vs. uniprot
Match: I3XMK1_ARAGI (Phosphoglucomutase-1 (Fragment) n=1 Tax=Arapaima gigas TaxID=113544 RepID=I3XMK1_ARAGI)

HSP 1 Score: 126 bits (317), Expect = 1.220e-35
Identity = 60/95 (63.16%), Postives = 73/95 (76.84%), Query Frame = 1 
Query:    4 IAKADEFEYKDPVDGSVASRQGIRILMSDGSRVVFRLSGTGSVGATIRMYIEKYEKDEDKLDQVPAEALSGLVALGLKLSQLRELTGRENPTVIT 288
            + KAD FEY DPVDGSV+  QG+RI+ SDGSR++FRLSGTGS GATIR+YI+ YE+D  K+ Q P   L+ LV + LK+SQL E TGR  PTVIT
Sbjct:   32 VEKADNFEYSDPVDGSVSKNQGLRIIFSDGSRIIFRLSGTGSAGATIRLYIDSYERDPQKIYQDPQVMLAPLVKIALKISQLHEKTGRSGPTVIT 126
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BLAST of mRNA_E-fasciculatus_F_contig13277.2465.1 vs. uniprot
Match: A0A540KE80_MALBA (Uncharacterized protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540KE80_MALBA)

HSP 1 Score: 130 bits (326), Expect = 1.230e-35
Identity = 63/96 (65.62%), Postives = 77/96 (80.21%), Query Frame = 1 
Query:    1 SIAKADEFEYKDPVDGSVASRQGIRILMSDGSRVVFRLSGTGSVGATIRMYIEKYEKDEDKLDQVPAEALSGLVALGLKLSQLRELTGRENPTVIT 288
            ++  ADEFEYKDPVDGS++  QGIR L  DGSR+VFRLSGTGS GATIR+YIE+YEKD  K+ +  +EALS LV + LKLS+++E TGR  PTVIT
Sbjct:  143 NVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKIGRESSEALSPLVEVALKLSKMQEFTGRSAPTVIT 238
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BLAST of mRNA_E-fasciculatus_F_contig13277.2465.1 vs. uniprot
Match: A0A1J3DV68_NOCCA (Putative phosphoglucomutase, cytoplasmic 2 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3DV68_NOCCA)

HSP 1 Score: 125 bits (314), Expect = 6.300e-35
Identity = 61/96 (63.54%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:    1 SIAKADEFEYKDPVDGSVASRQGIRILMSDGSRVVFRLSGTGSVGATIRMYIEKYEKDEDKLDQVPAEALSGLVALGLKLSQLRELTGRENPTVIT 288
            ++A ADEFEYKDPVDGSV+  QGIR L  DGSR+VFRLSGTGS GATIR+YIE+YEKD  K  +   +AL+ LV + LKLS++++ TGR  PTV+T
Sbjct:   51 NVASADEFEYKDPVDGSVSKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDASKTGRDSQDALAPLVDVALKLSKMQDFTGRSAPTVVT 146
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BLAST of mRNA_E-fasciculatus_F_contig13277.2465.1 vs. uniprot
Match: A0A7J0FCI3_9ERIC (Phosphoglucomutase/phosphomannomutase family protein n=2 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0FCI3_9ERIC)

HSP 1 Score: 124 bits (311), Expect = 7.630e-35
Identity = 61/96 (63.54%), Postives = 75/96 (78.12%), Query Frame = 1 
Query:    1 SIAKADEFEYKDPVDGSVASRQGIRILMSDGSRVVFRLSGTGSVGATIRMYIEKYEKDEDKLDQVPAEALSGLVALGLKLSQLRELTGRENPTVIT 288
            ++A ADEFEYKDPVDGS++  QGIR L +DGSR+VFRLSGTGS GATIR+YIE+YEKD  K  +    AL+ LV + LKLS++ + TGR  PTVIT
Sbjct:   22 NVADADEFEYKDPVDGSISKHQGIRYLFADGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQAALAPLVEVALKLSKMEQFTGRSAPTVIT 117
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13277.2465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN90_ECTSI1.680e-5196.88UTP--glucose-1-phosphate uridylyltransferase n=4 T... [more]
A0A836CGV2_9STRA6.870e-4079.17UTP--glucose-1-phosphate uridylyltransferase-domai... [more]
A0A392MU22_9FABA1.260e-3665.63Phosphoglucomutase n=1 Tax=Trifolium medium TaxID=... [more]
I3ST63_LOTJA3.710e-3664.58Uncharacterized protein n=1 Tax=Lotus japonicus Ta... [more]
A0A5N5GGS2_9ROSA6.100e-3664.58Phosphoglucomutase n=1 Tax=Pyrus ussuriensis x Pyr... [more]
A0A7S2Y0U8_9STRA7.050e-3668.75Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
I3XMK1_ARAGI1.220e-3563.16Phosphoglucomutase-1 (Fragment) n=1 Tax=Arapaima g... [more]
A0A540KE80_MALBA1.230e-3565.63Uncharacterized protein n=1 Tax=Malus baccata TaxI... [more]
A0A1J3DV68_NOCCA6.300e-3563.54Putative phosphoglucomutase, cytoplasmic 2 (Fragme... [more]
A0A7J0FCI3_9ERIC7.630e-3563.54Phosphoglucomutase/phosphomannomutase family prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13277contigE-fasciculatus_F_contig13277:1894..2582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.3
Seed ortholog evalue5.3e-44
Seed eggNOG ortholog2880.D8LN90
Preferred namePGM2
KEGG rclassRC00002,RC00408
KEGG koko:K00963,ko:K01835
KEGG ReactionR00289,R00959,R01057,R08639
KEGG Pathwayko00010,ko00030,ko00040,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00040,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130
KEGG ModuleM00129,M00361,M00362,M00549
GOsGO:0000271,GO:0003674,GO:0003824,GO:0004614,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0005982,GO:0005996,GO:0006006,GO:0006012,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009059,GO:0009250,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009581,GO:0009582,GO:0009590,GO:0009605,GO:0009628,GO:0009629,GO:0009987,GO:0010035,GO:0010038,GO:0010319,GO:0015980,GO:0016020,GO:0016051,GO:0016052,GO:0016853,GO:0016866,GO:0016868,GO:0019252,GO:0019318,GO:0019320,GO:0019388,GO:0031967,GO:0031975,GO:0033692,GO:0034637,GO:0034645,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046365,GO:0046686,GO:0050896,GO:0051606,GO:0055114,GO:0071704,GO:0071944,GO:1901575,GO:1901576
EggNOG free text desc.Utp--glucose-1-phosphate uridylyltransferase
EggNOG OGsCOG0033@1,COG4284@1,KOG0625@2759,KOG2638@2759
EC2.7.7.9,5.4.2.2
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size291
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927830.2186341-CDS-E-fasciculatus_F_contig13277:1893..20351622927830.2186341-CDS-E-fasciculatus_F_contig13277:1893..2035Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13277 1894..2035 -
1695995712.9159338-CDS-E-fasciculatus_F_contig13277:1893..20351695995712.9159338-CDS-E-fasciculatus_F_contig13277:1893..2035Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13277 1894..2035 -
1622927830.2333727-CDS-E-fasciculatus_F_contig13277:2433..25821622927830.2333727-CDS-E-fasciculatus_F_contig13277:2433..2582Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13277 2434..2582 -
1695995712.9309561-CDS-E-fasciculatus_F_contig13277:2433..25821695995712.9309561-CDS-E-fasciculatus_F_contig13277:2433..2582Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13277 2434..2582 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13277.2465.1prot_E-fasciculatus_F_contig13277.2465.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13277 1894..2582 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13277.2465.1

>prot_E-fasciculatus_F_contig13277.2465.1 ID=prot_E-fasciculatus_F_contig13277.2465.1|Name=mRNA_E-fasciculatus_F_contig13277.2465.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=97bp
SIAKADEFEYKDPVDGSVASRQGIRILMSDGSRVVFRLSGTGSVGATIRM
YIEKYEKDEDKLDQVPAEALSGLVALGLKLSQLRELTGRENPTVIT*
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mRNA from alignment at E-fasciculatus_F_contig13277:1894..2582-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13277.2465.1 ID=mRNA_E-fasciculatus_F_contig13277.2465.1|Name=mRNA_E-fasciculatus_F_contig13277.2465.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=689bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13277:1894..2582- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCGATCGCGAAGGCCGACGAGTTTGAGTACAAGGACCCCGTCGATGGTTC
CGTTGCCTCGAGGCAAGGCATCCGCATCCTCATGTCTGACGGCTCGAGGG
TAGTCTTCCGGCTCAGCGGGACTGGATCTGTCGGCGCCACAATTCGCATG
TGAGTTTTTTTCGATCGTTTCTTTTTTAGATGGAAAAAAAGCGGAAGCCA
ACGGTATTGTGGCGCAAACGGTATCGTTGCACTATGAAGGGCTAGCAAGT
CGTGCGAGCTTGGGATCCGCTCGTGCTCGGTGTTCGTTAGCCCCGCCGTC
GGCTGCCGCCGCTGTTGCGGAGATAGTCTTGACGGGGATGACACTTATTT
GTTCTAGAGGAGCACACCGTGCACACGTCACTCTTGCATGTCGTGATCAT
TTTGCGAAGTTTGTCGCTCTCTCTTTGCCGACCGGCTACTTATAGTACAG
TACCTCGGTCGGCTTTTTTTTGGTAGTGTTGTGTGTTGGTCACTTTTTTG
GGACTTCTTCTCACCACGTCTCTCGCCGCGTCCTGACGCCACGCCAGGTA
CATCGAGAAGTACGAGAAGGACGAGGACAAGTTGGACCAGGTGCCGGCGG
AAGCCCTGTCGGGCTTGGTCGCCCTCGGCCTGAAGCTGTCCCAGCTCAGG
GAGCTCACCGGCCGCGAGAACCCCACCGTCATCACGTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13277:1894..2582-

>mRNA_E-fasciculatus_F_contig13277.2465.1 ID=mRNA_E-fasciculatus_F_contig13277.2465.1|Name=mRNA_E-fasciculatus_F_contig13277.2465.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=582bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13277:1894..2582- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCGATCGCGAAGGCCGACGAGTTTGAGTACAAGGACCCCGTCGATGGTTC
CGTTGCCTCGAGGCAAGGCATCCGCATCCTCATGTCTGACGGCTCGAGGG
TAGTCTTCCGGCTCAGCGGGACTGGATCTGTCGGCGCCACAATTCGCATT
CGATCGCGAAGGCCGACGAGTTTGAGTACAAGGACCCCGTCGATGGTTCC
GTTGCCTCGAGGCAAGGCATCCGCATCCTCATGTCTGACGGCTCGAGGGT
AGTCTTCCGGCTCAGCGGGACTGGATCTGTCGGCGCCACAATTCGCATGT
ACATCGAGAAGTACGAGAAGGACGAGGACAAGTTGGACCAGGTGCCGGCG
GAAGCCCTGTCGGGCTTGGTCGCCCTCGGCCTGAAGCTGTCCCAGCTCAG
GGAGCTCACCGGCCGCGAGAACCCCACCGTCATCACGTAAGTACATCGAG
AAGTACGAGAAGGACGAGGACAAGTTGGACCAGGTGCCGGCGGAAGCCCT
GTCGGGCTTGGTCGCCCTCGGCCTGAAGCTGTCCCAGCTCAGGGAGCTCA
CCGGCCGCGAGAACCCCACCGTCATCACGTAA
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