mRNA_E-fasciculatus_F_contig13273.2464.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig13273.2464.1 vs. uniprot
Match: D8LT64_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT64_ECTSI) HSP 1 Score: 370 bits (950), Expect = 2.750e-122 Identity = 257/333 (77.18%), Postives = 261/333 (78.38%), Query Frame = 1
Query: 1 GRGGSRLPXXXXXXXXXXXXXXXEVVSGVSTLVDLPLPNNGDYSQVPTDVLMASLALVARLVAAVASCLGVSLPHPLFPAASTRYATISVDSSPIERRSSQYPLCPLSKLAEIGVMGAASAVCKTMGAFDTALDLLRNDIVHLCVEGANVPVDSLWPAEALLLNLWELQQHAMSELRSFSPMVDVPLPMPRDPPEPKSAGFHRHGARGGESAPGSSRDRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVGTALPGGGTEXXXXXXXXXXXXXXXXVEVDGG-------GRDQGDLRSEEADNPGGAGWRPREGLGGRLG 978
GR +RLPXXXXXXXXXXXXXXXEVVSGVSTLVDLPLPNNGDYSQVP DVLMASLALVARLVAAVASCLGVSLPHPLFPAASTRYATISVDSSP ER SSQYPLCPLSKLAEIGVMGAASAVCKTMGAFDTALDLLRNDIVHLCVEGANVPVDSLWPAEALLLNLWELQQHAMSELRS SPMVDVPLPMPRDPPEPKSAGFHR G+RGG S SRDRA XXXXXXXX XXXXXXXXXXXXXXXX GRD+G+LRSEEADNPGG GWRPRE LGGRLG
Sbjct: 200 GREVTRLPXXXXXXXXXXXXXXXEVVSGVSTLVDLPLPNNGDYSQVPADVLMASLALVARLVAAVASCLGVSLPHPLFPAASTRYATISVDSSPRER-SSQYPLCPLSKLAEIGVMGAASAVCKTMGAFDTALDLLRNDIVHLCVEGANVPVDSLWPAEALLLNLWELQQHAMSELRSSSPMVDVPLPMPRDPPEPKSAGFHRLGSRGGASG---SRDRASAKASAQASDGYRRRKTAGMRSRLGLGLGFTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRDRGELRSEEADNPGGRGWRPREALGGRLG 528
BLAST of mRNA_E-fasciculatus_F_contig13273.2464.1 vs. uniprot
Match: A0A835Z9D6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9D6_9STRA) HSP 1 Score: 108 bits (271), Expect = 1.080e-23 Identity = 65/160 (40.62%), Postives = 90/160 (56.25%), Query Frame = 1
Query: 76 VSGVSTLVDLPLPNNGDYSQVPTDVLMASLALVARLVAAVASCLGVSLPHPLFPAASTRYATISVDSSPIERRSSQYPLCPLSKLAEIGVMGAASAVCKTMGAFDTALDLLRNDIVHLCVEGANVPVDSLWPAEALLLNLWELQQHAMSELRSFSPMVDV 555
V GV + LPLP+NG Y+ VP DVL++ A + YA IS + S +YPLCP +AE GV+G + ++ AF+TALD+LR+++V LCV+GA VPVD LWPAEALLLNLWEL +H +L + + ++
Sbjct: 143 VGGVGAIAGLPLPHNGAYAAVPDDVLVSGYA------------------------SGRGYAAISSGAGG-GGASEEYPLCPPHTVAEGGVIGGKAYSSES--AFETALDMLRSNVVTLCVQGAGVPVDRLWPAEALLLNLWELHKHVGQQLAASTAALET 275
BLAST of mRNA_E-fasciculatus_F_contig13273.2464.1 vs. uniprot
Match: A0A4D9CP94_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CP94_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 8.090e-16 Identity = 65/180 (36.11%), Postives = 96/180 (53.33%), Query Frame = 1
Query: 76 VSGVSTLVDLPLPNNGDYSQV--PTDVLMASLALVARLVAAVASCLGVSLPHPL-FPAASTRYATISVDSSPIER------------RSSQYPLCPLSKLAEIGVMGAASAVCKTMGAFDTALDLLRNDIVHLCVEGANVPVDS--LWPAEALLLNLWELQQHAMSELRSFSPMVDVPLP 564
++GVST+V LPLPN G+Y ++ P +V +L LVARL ++A LG+ LPHPL FPA + YA I+ D+ RS+ P + GA A + F ++ L+ ++ L V A V VD+ LW EA+LLNLW +Q+ A ++++ + DVPLP
Sbjct: 257 LTGVSTIVGLPLPNAGNYRELGLPDEVCETALYLVARLTWSLAETLGMRLPHPLRFPAGKS-YALIAEDAQRRTEFALSPSFYHGGGRSNASSTAPAYRHPPNRRRGAECAGAEGTDPFSLGVEALQLNVHQLAVSPAGVGVDARELWGKEAVLLNLWAVQRRAAEVVKAYEGLPDVPLP 435
BLAST of mRNA_E-fasciculatus_F_contig13273.2464.1 vs. uniprot
Match: A0A7S3GZ98_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GZ98_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 2.550e-14 Identity = 65/192 (33.85%), Postives = 88/192 (45.83%), Query Frame = 1
Query: 76 VSGVSTLVDLPLPNNGDYSQVPTDVLMASLALVARLVAAVASCLGVSLPHPLFPAASTRYATISVDSSPIERR---SSQYPLCPLSKLAEIG--------------------------------VMGAASAVCKTM-----------GAFDTALDLLRNDIVHLCVEGANVPVDSLWPAEALLLNLWELQQH 513
VSG S+++ +PLPN+GDYS P DV+ + A +A LV A+++ L + LPHPL P ST IS R + Y LCP ++ G + S V K + F AL LL+ ++V LCV A + +SLWPAEA+LLNL LQQH
Sbjct: 36 VSGCSSILSVPLPNSGDYSGTPVDVVAMAFAHIALLVDALSATLNIPLPHPLLPFQSTE-CRISAQHDLWARAQIPNLSYSLCPAKQINHEGFKEFDWTSLDQLPTGREAGRNVEPFGTPPHTTTSSSRSVVVKAIVNGDMREYALNSNFSAALVLLQANVVALCVR-AGLSAESLWPAEAMLLNLHLLQQH 225
BLAST of mRNA_E-fasciculatus_F_contig13273.2464.1 vs. uniprot
Match: A0A8J2SE84_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SE84_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 1.080e-11 Identity = 59/146 (40.41%), Postives = 77/146 (52.74%), Query Frame = 1
Query: 82 GVSTLVDLPLPNNGDY--SQVPTDVLMASLALVARLVAAVASCLGVSLPHPLFPAASTRYATISVDSSPIERRSSQYPLCPLSKLAEIGVMGAASAVCKTMGA--FDTALDLLRNDIVHLCVEGANVPVDSLWPAEALLLNLWELQ 507
GV+T+ LPLP++ Q+P +V +LA VAR+VA A LGV+LPHPL S L+++A+ G AA+ T A F+TALDLLRND+ LCVEG P D L PAE +L NL L+
Sbjct: 157 GVATICGLPLPSDARACREQLPPEVWRCALAAVARVVATAADELGVALPHPLGVGGSA-----------------------LARVAD-GDAAAAARYALTPAAPDFETALDLLRNDVTRLCVEGGVAPGD-LGPAECMLPNLLALR 277 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13273.2464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13273.2464.1 >prot_E-fasciculatus_F_contig13273.2464.1 ID=prot_E-fasciculatus_F_contig13273.2464.1|Name=mRNA_E-fasciculatus_F_contig13273.2464.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=327bp GRGGSRLPPPGGGVAKAGGGGGGEVVSGVSTLVDLPLPNNGDYSQVPTDVback to top mRNA from alignment at E-fasciculatus_F_contig13273:5..3354+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig13273.2464.1 ID=mRNA_E-fasciculatus_F_contig13273.2464.1|Name=mRNA_E-fasciculatus_F_contig13273.2464.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3350bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13273:5..3354+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13273:5..3354+ >mRNA_E-fasciculatus_F_contig13273.2464.1 ID=mRNA_E-fasciculatus_F_contig13273.2464.1|Name=mRNA_E-fasciculatus_F_contig13273.2464.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1962bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13273:5..3354+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |