mRNA_E-fasciculatus_F_contig1327.2461.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1327.2461.1 vs. uniprot
Match: A0A6H5KA32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA32_9PHAE) HSP 1 Score: 360 bits (924), Expect = 1.930e-114 Identity = 276/335 (82.39%), Postives = 283/335 (84.48%), Query Frame = 1
Query: 1 RQRALVSPIDASLALWSEGRRERVAELEEELRLHDARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT-----RAPKATAQPPSRXXXXXXXXXXXXXXXAVE-----GTATISGASARPGEAAGARDRGRRRPGGFSSTTLEDRLERWGAGWRPPALRPLPRGGEGFFSGWTHLGQPERFELVKSANRSVGPDGEPLTDAELEWTVLCLEEAEERMSAMDFSAAAGILEGVLGRCPGLTLAYYRLSLCILAARGEHGSRQAKLLLECAMSLEGVENRHLSAGVDLVLRILR 975
RQRALVSPIDASL LWS+GRRERVAELEEELRL DARR XXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX R P+ATAQPPSR XXXXXXXXXX GTAT +GASARPG+AAGARDR R GG SSTTLEDRL RWGAGWRPP LRPLPRGGEGFFSGWTHLGQPERFELVKSANRSVGPDGEPL+D ELEW VLCLEEAEERMSAMDFS AAGILEGVLGRCPGLTLAYYRL+LCILAARGEHGSRQAKLLL+CAMSLEG ENRHLSAGVDLVLRILR
Sbjct: 67 RQRALVSPIDASLTLWSDGRRERVAELEEELRLWDARRRQXXXXXXXXXXXXXXXXXXXXXQEGESATGRDATPAGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIPRATAQPPSRDHHGGXXXXXXXXXXXXXXXXXXGTATTAGASARPGDAAGARDR-RHPRGGSSSTTLEDRLGRWGAGWRPPPLRPLPRGGEGFFSGWTHLGQPERFELVKSANRSVGPDGEPLSDPELEWAVLCLEEAEERMSAMDFSTAAGILEGVLGRCPGLTLAYYRLALCILAARGEHGSRQAKLLLDCAMSLEGAENRHLSAGVDLVLRILR 400
BLAST of mRNA_E-fasciculatus_F_contig1327.2461.1 vs. uniprot
Match: D7FZF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF3_ECTSI) HSP 1 Score: 285 bits (728), Expect = 3.060e-88 Identity = 140/157 (89.17%), Postives = 145/157 (92.36%), Query Frame = 1
Query: 505 GFSSTTLEDRLERWGAGWRPPALRPLPRGGEGFFSGWTHLGQPERFELVKSANRSVGPDGEPLTDAELEWTVLCLEEAEERMSAMDFSAAAGILEGVLGRCPGLTLAYYRLSLCILAARGEHGSRQAKLLLECAMSLEGVENRHLSAGVDLVLRILR 975
G + T RL RWGAGWRPPALRPLPRGGEGFFSGWTHLGQ ERFELVKSANRSVGPDGEPL+DAELEW VLCLEEAEERMSAM FS AAGILEGVLGRCPGLTLAYYRL+LC+LAARGEHGS QAKLLL+CAMSLEGVENRHLSAGVDLVLRILR
Sbjct: 45 GRTRTASSSRLARWGAGWRPPALRPLPRGGEGFFSGWTHLGQSERFELVKSANRSVGPDGEPLSDAELEWAVLCLEEAEERMSAMYFSTAAGILEGVLGRCPGLTLAYYRLALCVLAARGEHGSSQAKLLLDCAMSLEGVENRHLSAGVDLVLRILR 201
BLAST of mRNA_E-fasciculatus_F_contig1327.2461.1 vs. uniprot
Match: A0A7S1CKU0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CKU0_9STRA) HSP 1 Score: 107 bits (268), Expect = 2.670e-23 Identity = 67/160 (41.88%), Postives = 92/160 (57.50%), Query Frame = 1
Query: 571 LRPLPRGGEGFFSGWTHLGQPERFELVKSANRSVGPDGEPLTDAELEWTVLCLEEAEERMSAMDFSAAAGILEGVLGRCPGLTLAYYRLSLCILAARGEHGSRQAKLLLECAMSLEGVENRHLSAGVDLVLRILRNDAIPESYWSEDYPRSLGDLRALEA 1050
L+PLP E +++ T +G+ ERFELVKSA RS+ G TD +LE VL E A+ M+ +F A +L R P TLAY+R + LA G G AK LL A++LE N+ L+ GVDL+LR++ A+P YW + +S GD+ AL A
Sbjct: 1 LKPLPHADE-YWTTETWMGECERFELVKSARRSLDATGRAPTDEQLELCVLLAEAADGAMTREEFPRARDLLLEAARRLPSFTLAYFRAAEATLAIDGRRGLAAAKPLLRAAVALEP-GNKQLATGVDLLLRVVSRVAVPGHYWLAENAKSSGDVLALAA 158 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1327.2461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1327.2461.1 >prot_E-fasciculatus_F_contig1327.2461.1 ID=prot_E-fasciculatus_F_contig1327.2461.1|Name=mRNA_E-fasciculatus_F_contig1327.2461.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=108bp MSAMDFSAAAGILEGVLGRCPGLTLAYYRLSLCILAARGEHGSRQAKLLLback to top mRNA from alignment at E-fasciculatus_F_contig1327:338..5018+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1327.2461.1 ID=mRNA_E-fasciculatus_F_contig1327.2461.1|Name=mRNA_E-fasciculatus_F_contig1327.2461.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4681bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1327:338..5018+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1327:338..5018+ >mRNA_E-fasciculatus_F_contig1327.2461.1 ID=mRNA_E-fasciculatus_F_contig1327.2461.1|Name=mRNA_E-fasciculatus_F_contig1327.2461.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=648bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1327:338..5018+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |