mRNA_E-fasciculatus_F_contig13269.2460.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13269.2460.1
Unique NamemRNA_E-fasciculatus_F_contig13269.2460.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13269.2460.1 vs. uniprot
Match: D7G4B5_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B5_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 2.350e-43
Identity = 76/121 (62.81%), Postives = 86/121 (71.07%), Query Frame = 1 
Query:    1 MHRLHRGVEESSEIDGRVEEETWTGDIRGAQEREGESAMGDSHLGETCTLDGCASGPTHGVKGKKAEFCVTHAVAGSVNVTKXXXXXXXXXXXXXXXXGSKKGIFCSKHAPSGMVNLALRS 363
            MHRL RG EESSE+DG V+EE WT  IRGA+ R+GE A+G S LGE+C LDGC   PTHGVKGKKA FCV+H +AGSVNVTK                GSKK  FCSKHAPSG+VNLA+ S
Sbjct:    1 MHRLFRGAEESSEVDGNVKEEMWTDGIRGAETRKGEQALGGSPLGESCPLDGCTRKPTHGVKGKKAVFCVSHIIAGSVNVTKECTADGCFTGAKFGVAGSKKEKFCSKHAPSGVVNLAVTS 121
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BLAST of mRNA_E-fasciculatus_F_contig13269.2460.1 vs. uniprot
Match: D7G4X8_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X8_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 1.170e-27
Identity = 68/122 (55.74%), Postives = 79/122 (64.75%), Query Frame = 1 
Query:    1 MHRLHRGVEESSEIDGRVEEETWTGDIRGAQ-EREGESAMGDSHLG-ETCTLDGCASGPTHGVKGKKAEFCVTHAVAGSVNVTKXXXXXXXXXXXXXXXXGSKKGIFCSKHAPSGMVNLALR 360
            MHRL+RG  ESSE  G V+EE W+ DIR A+ EREGE AM DSH+G  +CTL GC   PTHGV GKKAEFC  H++A SVNV++                GSKK  F SKHA  GMVNL+ R
Sbjct:    1 MHRLYRGGGESSEFGGVVKEEMWSDDIREAEDEREGELAMSDSHVGGSSCTLYGCTRKPTHGVAGKKAEFCARHSLATSVNVSQECSIDGCSTRAHYGVAGSKKREFXSKHALEGMVNLSNR 122
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13269.2460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4B5_ECTSI2.350e-4362.81EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G4X8_ECTSI1.170e-2755.74EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13269contigE-fasciculatus_F_contig13269:1118..1573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.4
Seed ortholog evalue1.5e-24
Seed eggNOG ortholog2880.D7G4X8
EggNOG OGs29ZCP@1,2RXW0@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-02_002070.1
Exons1
Model size457
Cds size456
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927829.6222537-CDS-E-fasciculatus_F_contig13269:1117..15731622927829.6222537-CDS-E-fasciculatus_F_contig13269:1117..1573Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13269 1118..1573 +
1695995712.7328155-CDS-E-fasciculatus_F_contig13269:1117..15731695995712.7328155-CDS-E-fasciculatus_F_contig13269:1117..1573Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13269 1118..1573 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13269.2460.1prot_E-fasciculatus_F_contig13269.2460.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13269 1118..1573 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13269.2460.1

>prot_E-fasciculatus_F_contig13269.2460.1 ID=prot_E-fasciculatus_F_contig13269.2460.1|Name=mRNA_E-fasciculatus_F_contig13269.2460.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=152bp
MHRLHRGVEESSEIDGRVEEETWTGDIRGAQEREGESAMGDSHLGETCTL
DGCASGPTHGVKGKKAEFCVTHAVAGSVNVTKECAADGCSTGARFGVAGS
KKGIFCSKHAPSGMVNLALRSCATEGCFTEATYGVAGSKKSESCAMHAKE
GM
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mRNA from alignment at E-fasciculatus_F_contig13269:1118..1573+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13269.2460.1 ID=mRNA_E-fasciculatus_F_contig13269.2460.1|Name=mRNA_E-fasciculatus_F_contig13269.2460.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=456bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13269:1118..1573+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCATCGACTCCACCGGGGAGTGGAGGAATCCAGCGAGATTGATGGCAG
AGTCGAGGAAGAGACGTGGACGGGTGACATTCGAGGTGCTCAAGAAAGGG
AGGGAGAGTCAGCAATGGGCGATTCACATCTAGGTGAGACCTGCACCTTA
GACGGATGCGCGAGTGGACCTACCCACGGTGTGAAGGGCAAGAAGGCAGA
GTTCTGCGTGACACATGCTGTTGCGGGCTCGGTCAATGTGACCAAGGAGT
GTGCCGCTGACGGTTGTTCCACTGGTGCGAGGTTCGGCGTGGCTGGCAGC
AAGAAGGGGATATTTTGCTCGAAACATGCGCCAAGCGGCATGGTGAACTT
AGCCCTCAGGAGTTGCGCTACCGAGGGTTGCTTCACGGAAGCAACCTATG
GCGTGGCAGGCAGCAAGAAGAGTGAATCCTGCGCGATGCATGCAAAGGAG
GGGATG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13269:1118..1573+

>mRNA_E-fasciculatus_F_contig13269.2460.1 ID=mRNA_E-fasciculatus_F_contig13269.2460.1|Name=mRNA_E-fasciculatus_F_contig13269.2460.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=912bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13269:1118..1573+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCATCGACTCCACCGGGGAGTGGAGGAATCCAGCGAGATTGATGGCAG
AGTCGAGGAAGAGACGTGGACGGGTGACATTCGAGGTGCTCAAGAAAGGG
AGGGAGAGTCAGCAATGGGCGATTCACATCTAGGTGAGACCTGCACCTTA
GACGGATGCGCGAGTGGACCTACCCACGGTGTGAAGGGCAAGAAGGCAGA
GTTCTGCGTGACACATGCTGTTGCGGGCTCGGTCAATGTGACCAAGGAGT
GTGCCGCTGACGGTTGTTCCACTGGTGCGAGGTTCGGCGTGGCTGGCAGC
AAGAAGGGGATATTTTGCTCGAAACATGCGCCAAGCGGCATGGTGAACTT
AGCCCTCAGGAGTTGCGCTACCGAGGGTTGCTTCACGGAAGCAACCTATG
GCGTGGCAGGCAGCAAGAAGAGTGAATCCTGCGCGATGCATGCAAAGGAG
GGGATGATGCATCGACTCCACCGGGGAGTGGAGGAATCCAGCGAGATTGA
TGGCAGAGTCGAGGAAGAGACGTGGACGGGTGACATTCGAGGTGCTCAAG
AAAGGGAGGGAGAGTCAGCAATGGGCGATTCACATCTAGGTGAGACCTGC
ACCTTAGACGGATGCGCGAGTGGACCTACCCACGGTGTGAAGGGCAAGAA
GGCAGAGTTCTGCGTGACACATGCTGTTGCGGGCTCGGTCAATGTGACCA
AGGAGTGTGCCGCTGACGGTTGTTCCACTGGTGCGAGGTTCGGCGTGGCT
GGCAGCAAGAAGGGGATATTTTGCTCGAAACATGCGCCAAGCGGCATGGT
GAACTTAGCCCTCAGGAGTTGCGCTACCGAGGGTTGCTTCACGGAAGCAA
CCTATGGCGTGGCAGGCAGCAAGAAGAGTGAATCCTGCGCGATGCATGCA
AAGGAGGGGATG
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