mRNA_E-fasciculatus_F_contig13263.2459.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13263.2459.1
Unique NamemRNA_E-fasciculatus_F_contig13263.2459.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13263.2459.1 vs. uniprot
Match: D8LJ23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ23_ECTSI)

HSP 1 Score: 336 bits (861), Expect = 4.510e-102
Identity = 226/269 (84.01%), Postives = 229/269 (85.13%), Query Frame = 1 
Query:    1 VAPLVVHAVRESVFYETSADPIRFSLLGLDLITRQQAPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGSRRGVAGQDRWFFTFLLCKLLSGRKMVASNTLQRYPETFDLAASAVNEALRGATVEGLDLFAEGSVWPDKPRTRFPCVEASTGEVKTVLVPPLLLETAIALLSFHRADANLTPELRVRGLPTAAVAHPAATPLSSSSSPSAVASTGTEPAASAEAAAA--LVGAGAAKMDGLVRDAVGVKLWVRLAQAPSQQMSALAAR 801
            VAPLVVHAVR+SVFYETSADPIRFSLLGLDLITRQQA  XXXXXXXXXXXXXXXXXXXXXXXXXXXX   SRRGVAGQDRWFFTFLLCKLLSGRKMVASNTLQRYPETFDLAASAVN ALRGATVEGL+LFAEGSVWPDKPRTRFPCVEASTGEVKTVL+PPLLLETAIALLSFHRADANLTPELR          HPAATPLSSS                        LVGAGAAKMDGLVRDAVGVKLWVRLAQAPSQQMSALAAR
Sbjct:  438 VAPLVVHAVRDSVFYETSADPIRFSLLGLDLITRQQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSRRGVAGQDRWFFTFLLCKLLSGRKMVASNTLQRYPETFDLAASAVNGALRGATVEGLNLFAEGSVWPDKPRTRFPCVEASTGEVKTVLLPPLLLETAIALLSFHRADANLTPELRELQELMFPSEHPAATPLSSSXXXXXXXXXXXXXXXXXXXXXXXXLVGAGAAKMDGLVRDAVGVKLWVRLAQAPSQQMSALAAR 706
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BLAST of mRNA_E-fasciculatus_F_contig13263.2459.1 vs. uniprot
Match: A0A6H5L4I3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I3_9PHAE)

HSP 1 Score: 332 bits (850), Expect = 1.420e-100
Identity = 224/268 (83.58%), Postives = 227/268 (84.70%), Query Frame = 1 
Query:    1 VAPLVVHAVRESVFYETSADPIRFSLLGLDLITRQQAPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGSRRGVAGQDRWFFTFLLCKLLSGRKMVASNTLQRYPETFDLAASAVNEALRGATVEGLDLFAEGSVWPDKPRTRFPCVEASTGEVKTVLVPPLLLETAIALLSFHRADANLTPELRVRGLPTAAVAHPAATPLSSSSSPSAVASTGTEPAASAEAAAA-LVGAGAAKMDGLVRDAVGVKLWVRLAQAPSQQMSALAAR 801
            VAPLVVHAVR+SVFYETSADPIRFSLLGLD ITRQQAP  XXXXXXXXXXXXXXXXXXXXXXXXXXX   SRR VAGQDRWFFTFLLCKLLSGRKMVASNTLQRYPETFDLAASAVN ALRGATVEGLDLFAEGSVWPDKPRTRFPCVEASTG+VKTVL+PPLLLETAIALLSFHRADANLTPELR          HPAATPLSSS                       LVGAGAAKMDGLVRDAVGVKLWVRLAQAPSQQMSALAAR
Sbjct: 1787 VAPLVVHAVRDSVFYETSADPIRFSLLGLDRITRQQAP--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRRRVAGQDRWFFTFLLCKLLSGRKMVASNTLQRYPETFDLAASAVNGALRGATVEGLDLFAEGSVWPDKPRTRFPCVEASTGQVKTVLLPPLLLETAIALLSFHRADANLTPELRELQELMFPSEHPAATPLSSSXXXXXXXXXXXXXXXXXXXXXXXLVGAGAAKMDGLVRDAVGVKLWVRLAQAPSQQMSALAAR 2052
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13263.2459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJ23_ECTSI4.510e-10284.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4I3_9PHAE1.420e-10083.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13263contigE-fasciculatus_F_contig13263:1990..3647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size804
Cds size804
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13263.2459.1prot_E-fasciculatus_F_contig13263.2459.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13263 1990..3647 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927829.5622072-CDS-E-fasciculatus_F_contig13263:1989..22051622927829.5622072-CDS-E-fasciculatus_F_contig13263:1989..2205Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13263 1990..2205 -
1695995712.694398-CDS-E-fasciculatus_F_contig13263:1989..22051695995712.694398-CDS-E-fasciculatus_F_contig13263:1989..2205Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13263 1990..2205 -
1622927829.572989-CDS-E-fasciculatus_F_contig13263:2549..27381622927829.572989-CDS-E-fasciculatus_F_contig13263:2549..2738Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13263 2550..2738 -
1695995712.7039535-CDS-E-fasciculatus_F_contig13263:2549..27381695995712.7039535-CDS-E-fasciculatus_F_contig13263:2549..2738Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13263 2550..2738 -
1622927829.582596-CDS-E-fasciculatus_F_contig13263:2971..30921622927829.582596-CDS-E-fasciculatus_F_contig13263:2971..3092Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13263 2972..3092 -
1695995712.7127788-CDS-E-fasciculatus_F_contig13263:2971..30921695995712.7127788-CDS-E-fasciculatus_F_contig13263:2971..3092Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13263 2972..3092 -
1622927829.5920463-CDS-E-fasciculatus_F_contig13263:3369..36471622927829.5920463-CDS-E-fasciculatus_F_contig13263:3369..3647Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13263 3370..3647 -
1695995712.7212877-CDS-E-fasciculatus_F_contig13263:3369..36471695995712.7212877-CDS-E-fasciculatus_F_contig13263:3369..3647Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13263 3370..3647 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13263.2459.1

>prot_E-fasciculatus_F_contig13263.2459.1 ID=prot_E-fasciculatus_F_contig13263.2459.1|Name=mRNA_E-fasciculatus_F_contig13263.2459.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=268bp
VAPLVVHAVRESVFYETSADPIRFSLLGLDLITRQQAPPPPRAPAPALDE
EGVGNGDEEDGAGGGGGVGGSRRGVAGQDRWFFTFLLCKLLSGRKMVASN
TLQRYPETFDLAASAVNEALRGATVEGLDLFAEGSVWPDKPRTRFPCVEA
STGEVKTVLVPPLLLETAIALLSFHRADANLTPELRVRGLPTAAVAHPAA
TPLSSSSSPSAVASTGTEPAASAEAAAALVGAGAAKMDGLVRDAVGVKLW
VRLAQAPSQQMSALAAR*
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mRNA from alignment at E-fasciculatus_F_contig13263:1990..3647-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13263.2459.1 ID=mRNA_E-fasciculatus_F_contig13263.2459.1|Name=mRNA_E-fasciculatus_F_contig13263.2459.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1658bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13263:1990..3647- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGGCACCGCTGGTTGTGCACGCGGTGCGCGAGTCGGTCTTCTACGAGAC
CTCCGCCGACCCGATCCGCTTCTCGCTTCTCGGGCTCGACCTCATCACGA
GGCAGCAAGCGCCGCCACCGCCCAGGGCGCCAGCACCGGCGTTAGACGAG
GAGGGGGTGGGGAACGGCGACGAAGAGGACGGGGCAGGGGGCGGCGGCGG
CGTTGGTGGTTCTCGGCGGGGGGTTGCCGGACAGGATCGGTGGTTCTTCA
CGTTCCTGCTCTGCAAGCTGCTGAGCGGGTGAGCTAGTAAGCCCCTAGTA
GCTGTTTCGTGCTCACATTTTGTCCTCCTCGGAAACAGCAGTTGAATGTG
CGAGGGAAGAGAGATACTGATACATACTGCAGTAGAGGTCCCTGTTTAGA
GCCGGTGCGTGCCCAGAAATCACCGGCACTATACCGGGTCTAACCACCAC
TAATCAGGGACCTCTACTGCTGTATTGACGACTGCAGGTTTGCTGGGGTC
GGGTCCGCCCCTTGCCCCGTTTCCTAACTTAGTTCGTTGTTTCCTCTCCC
CTCAGGCGTAAGATGGTAGCCTCGAACACCCTTCAGAGGTACCCGGAGAC
GTTCGACCTGGCCGCCAGCGCGGTGAACGAGGCTCTGAGGGGCGCAACCG
TGGAAGGCCTAGACTTGTTCGCGGAGGTGAGTCGGTGTAGAGGTAGGTGG
GCGGTGAGGTAGGATTTCGAGACCCATGAGAGAGCTCCTCCTTGGAATCT
TGCAGCCGAGAATGCAGCACGCAGACGACGCGTTGGCAAGACCCACCGAT
TTTTTTATCCGTCCCCTCGAAGACGCGTGGTCACTAGTCTCACCGCTAAG
GCATACAAAACACAAGGGTACGCCCCCCCCCCCATGTACTCTTTACGCCC
GCGCTGCAGGGCAGCGTGTGGCCCGACAAGCCTCGGACCCGGTTTCCCTG
CGTGGAGGCGTCTACGGGGGAGGTGAAGACCGTGCTGGTGCCGCCCCTCC
TCCTCGAGACGGCCATCGCCCTGCTGAGCTTCCACCGAGCCGACGCCAAC
CTTACGCCAGAGCTGCGGGTGAGAGGACTGCCTACTGCTGCTGTGGCAGT
TGTATCTTGCTCACCGTTTTTCTGTTGAGACCTGCGTGTTTGTCAAACTA
TCGCTACCCCACCCCACTCCCCTCGCCCCATAGAATCCCCAAGGGCTAGT
GTTCCCCCACGGAGCACCCGTCGGCGACGCAGTCATGGGATCGCGCGCGT
TCACGCCACTTCCCACCGTGTTTTCTTGTTTAGACCTTTAGACCCGCCTT
TTTTCTTTTTTCCAGCGTGCTTGTCGAAAGGCACCAGCACCAGCGACACA
GCAAGCATCCATATTCGCCACCCGTAAATTATCGCCCCCCCCCCCCCCCC
NNNNNNNNNNNNNNNNNNNNNNNNNTGATGTTTCCCTCGCAGCACCCGGC
GGCGACGCCGCTATCATCATCCTCGTCACCGTCGGCGGTGGCGTCAACCG
GCACCGAACCCGCCGCATCTGCGGAGGCGGCCGCGGCCCTGGTAGGGGCG
GGTGCGGCGAAGATGGACGGGCTGGTGAGGGACGCCGTCGGCGTGAAGCT
CTGGGTGCGGCTGGCGCAGGCGCCCTCCCAGCAGATGTCTGCCCTCGCTG
CCCGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13263:1990..3647-

>mRNA_E-fasciculatus_F_contig13263.2459.1 ID=mRNA_E-fasciculatus_F_contig13263.2459.1|Name=mRNA_E-fasciculatus_F_contig13263.2459.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1608bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13263:1990..3647- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGGCACCGCTGGTTGTGCACGCGGTGCGCGAGTCGGTCTTCTACGAGAC
CTCCGCCGACCCGATCCGCTTCTCGCTTCTCGGGCTCGACCTCATCACGA
GGCAGCAAGCGCCGCCACCGCCCAGGGCGCCAGCACCGGCGTTAGACGAG
GAGGGGGTGGGGAACGGCGACGAAGAGGACGGGGCAGGGGGCGGCGGCGG
CGTTGGTGGTTCTCGGCGGGGGGTTGCCGGACAGGATCGGTGGTTCTTCA
CGTTCCTGCTCTGCAAGCTGCTGAGCGGGTGGCACCGCTGGTTGTGCACG
CGGTGCGCGAGTCGGTCTTCTACGAGACCTCCGCCGACCCGATCCGCTTC
TCGCTTCTCGGGCTCGACCTCATCACGAGGCAGCAAGCGCCGCCACCGCC
CAGGGCGCCAGCACCGGCGTTAGACGAGGAGGGGGTGGGGAACGGCGACG
AAGAGGACGGGGCAGGGGGCGGCGGCGGCGTTGGTGGTTCTCGGCGGGGG
GTTGCCGGACAGGATCGGTGGTTCTTCACGTTCCTGCTCTGCAAGCTGCT
GAGCGGGCGTAAGATGGTAGCCTCGAACACCCTTCAGAGGTACCCGGAGA
CGTTCGACCTGGCCGCCAGCGCGGTGAACGAGGCTCTGAGGGGCGCAACC
GTGGAAGGCCTAGACTTGTTCGCGGAGGCGTAAGATGGTAGCCTCGAACA
CCCTTCAGAGGTACCCGGAGACGTTCGACCTGGCCGCCAGCGCGGTGAAC
GAGGCTCTGAGGGGCGCAACCGTGGAAGGCCTAGACTTGTTCGCGGAGGG
CAGCGTGTGGCCCGACAAGCCTCGGACCCGGTTTCCCTGCGTGGAGGCGT
CTACGGGGGAGGTGAAGACCGTGCTGGTGCCGCCCCTCCTCCTCGAGACG
GCCATCGCCCTGCTGAGCTTCCACCGAGCCGACGCCAACCTTACGCCAGA
GCTGCGGGTGAGAGGACTGCCTACTGCTGCTGTGGCAGGCAGCGTGTGGC
CCGACAAGCCTCGGACCCGGTTTCCCTGCGTGGAGGCGTCTACGGGGGAG
GTGAAGACCGTGCTGGTGCCGCCCCTCCTCCTCGAGACGGCCATCGCCCT
GCTGAGCTTCCACCGAGCCGACGCCAACCTTACGCCAGAGCTGCGGGTGA
GAGGACTGCCTACTGCTGCTGTGGCACACCCGGCGGCGACGCCGCTATCA
TCATCCTCGTCACCGTCGGCGGTGGCGTCAACCGGCACCGAACCCGCCGC
ATCTGCGGAGGCGGCCGCGGCCCTGGTAGGGGCGGGTGCGGCGAAGATGG
ACGGGCTGGTGAGGGACGCCGTCGGCGTGAAGCTCTGGGTGCGGCTGGCG
CAGGCGCCCTCCCAGCAGATGTCTGCCCTCGCTGCCCGGTGACACCCGGC
GGCGACGCCGCTATCATCATCCTCGTCACCGTCGGCGGTGGCGTCAACCG
GCACCGAACCCGCCGCATCTGCGGAGGCGGCCGCGGCCCTGGTAGGGGCG
GGTGCGGCGAAGATGGACGGGCTGGTGAGGGACGCCGTCGGCGTGAAGCT
CTGGGTGCGGCTGGCGCAGGCGCCCTCCCAGCAGATGTCTGCCCTCGCTG
CCCGGTGA
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