mRNA_E-fasciculatus_F_contig1326.2456.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1326.2456.1 vs. uniprot
Match: D7FPE5_ECTSI (SET and MYND domain containing 1b n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPE5_ECTSI) HSP 1 Score: 864 bits (2233), Expect = 1.700e-313 Identity = 447/502 (89.04%), Postives = 459/502 (91.43%), Query Frame = 1
Query: 235 MVDLVDESASEPSPETKSTSVGDPAPYARRSANLDARVEIRFDPKRGRGLFALRDIPAGTEVMRVPAAAAVLLDRS-KSSCGGCLLPTDTVGSLKKCHGFPLSFCAGCIKAGTVGGVSGVHSSATRELTKELNTICATSSGVDKDSLRLAADVFVRRKAGLLDDSEWGFLNSLESHDNEAHTMSLAPAELQKCTRLFKTLVDINISDEEVQAMYRRQAAVFGATTRQKCRITRNAHTVSPNTSKPGFGSVQGLFPCGALVNHSCLPNTFFHCVAEPSSPEGRPVVKQVLRSICNIRAGDELCCSYLSSGAAVGTVSERRDLLMGWGFRCACARCQSEAEEEKRLRRQRTPIDERTLKMLERLAQISCLGQKENAPALREEAYMPDLQLIAEFYSREKGKRLSPMLQYRVAVLMMEVTALISATNLFFRFMVCGFAADELFELRNAMAITCRQQQHMFATKVEVCDLGETQATNKLEGIRAVGKFAREDARQLHELYYGGQSK 1737
MVDLVDESASE SPET+S+S GDP YARR+ANLDARVE+RFDPKRGRGLFALRDIPAGTEVMRVPAAAAVLLDRS K SC GCLLPTDTVGSL+ CHGFPLSFCA C KA TVGGVSGVH+SAT ELTKELNTICATS G+DKDSLRLAADVFVRRKAGL DDSEWG LNSLESHDNEAHTMSLAPAEL KCTRLFKTLVD NISDE+VQAMYRR ITRNAHTVSPNTSKPGFGSVQGLFPCGALVNHSCLPNTFFHCV E SSPEGRPVVKQVLRSI NIRAGDELC SYLSSG+AVGTVSERRDLLMGWGFRCACARC SEAEEEKRLRRQRTPIDER LKMLERLAQIS LGQ+ENAPALREEAYMPDLQLIAEFYSREKGK LSPMLQYRVAVLMMEVTALI ATNLFFRFMVCGFAADEL ELRNAMAITCRQQQ+MFATKVEVCDLGETQAT KLEGIRAVGKFAR DAR+LHELYYGGQSK
Sbjct: 1 MVDLVDESASESSPETRSSSDGDPTRYARRTANLDARVEVRFDPKRGRGLFALRDIPAGTEVMRVPAAAAVLLDRSRKGSCSGCLLPTDTVGSLEACHGFPLSFCAACKKATTVGGVSGVHNSATCELTKELNTICATSGGIDKDSLRLAADVFVRRKAGLFDDSEWGLLNSLESHDNEAHTMSLAPAELHKCTRLFKTLVDTNISDEDVQAMYRR--------------ITRNAHTVSPNTSKPGFGSVQGLFPCGALVNHSCLPNTFFHCVTESSSPEGRPVVKQVLRSIRNIRAGDELCYSYLSSGSAVGTVSERRDLLMGWGFRCACARCLSEAEEEKRLRRQRTPIDERALKMLERLAQISALGQRENAPALREEAYMPDLQLIAEFYSREKGKLLSPMLQYRVAVLMMEVTALIGATNLFFRFMVCGFAADELSELRNAMAITCRQQQYMFATKVEVCDLGETQATKKLEGIRAVGKFARNDARRLHELYYGGQSK 488
BLAST of mRNA_E-fasciculatus_F_contig1326.2456.1 vs. uniprot
Match: D7FPE3_ECTSI (Set and mynd domain containing n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPE3_ECTSI) HSP 1 Score: 142 bits (358), Expect = 1.760e-32 Identity = 112/331 (33.84%), Postives = 161/331 (48.64%), Query Frame = 1
Query: 316 ARRSANLDARVEIRFDP---KRGRGLFALRDIPAGTEVMRVPAAAAVLLDRSKSS-CGGCLLPTDTVGSLKKCHGFPLSFCAG-CIKAG--------TVGGVSGVHSSATRELTKELNTICATSSGVDKDSLRLAADVFVRRKAGLLDDSEWGFLNSLESHDNEAHTM-----SLAPAELQKCTRLFKTLVDINISDEEVQAMYRRQAAVFGATTRQKCRITRNAHTVSPNT-SKPGFGSVQGLFPCGALVNHSCLPNTFFHCVAEPSSPEGRPVVKQVLRSICNIRAGDELCCSYLSSGAAVGTVSERRDLLMG-WGFRCACARCQSEAE 1248
ARR LD R ++R +P KRGRG+FA+ +PAGTEV+ AAA+ DR + + C CL D L KC FC C+ A T G V G+ EL + N ++ + D LRL + RR AGL D+ EW ++ L ++E +L P +++ + +S EE+Q ++RR + RN HTV P + +V G+FP +LVNHSC PN FH + + PEG P+ + LR ++ AG+E+C SYL+ A T RR+LL WGF C C RC+ + +
Sbjct: 113 ARRRGQLDPRFQVRRNPARPKRGRGIFAVEAVPAGTEVLVAKQAAALPRDRYRPAFCRRCLTLLDK-SLLIKCRRCEDRFCGKECVIAAAGEGTHEVTCGLVEGLGEEQLSELGRGDN-----AAATETDILRLTVECMSRRGAGLSDEEEWIEIDDLVLPEDEGGGEGSGGGTLEPDVIREAQARLND-GGLEVSAEEIQTVHRR--------------LRRNFHTVQPEPLGRLLPPTVVGVFPAASLVNHSCEPNACFH--SRRAGPEGPPL-ELALRCTTDVSAGEEVCVSYLAHCADAATKEGRRELLQNVWGFSCDCPRCEDDTK 419
BLAST of mRNA_E-fasciculatus_F_contig1326.2456.1 vs. uniprot
Match: A0A7S1AGI2_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AGI2_NOCSC) HSP 1 Score: 85.1 bits (209), Expect = 4.730e-14 Identity = 97/337 (28.78%), Postives = 144/337 (42.73%), Query Frame = 1
Query: 373 GRGLFALRDIPAGTEVMRVPAAAAVLLDRS-KSSCGGCLLPTDTVGSLKKCHGFPLSFCAGCIKAGTV-----GGVSGVHSSATRELTKE-LNTICATSSGVDKDSLRLAADVFV------RRKAGLL-----DDSEWGFLNSLES---HDNEAHTMSLAPAELQKCTRLFKTLVDINISDEE-----VQAMYRRQAAVFGATTRQKCRITRNAHTVSPN-------TSKPG----FGSVQGLFPCGALVNHSCLPNTFFHCVAEPSSPEGRPVVKQVLRSICNIRAGDELCCSYLSSGAAVGTVSERRD-LLMGWGFRCACARCQSEAEEEKRLRR 1269
GR A R++ AG V+R AA L DR C C PTD V CH FC+ C K+ G V + + T+ L +S+G LRLA + R K LL D EW + S + HD+ L+P + L L + + E V+ + + A + R CRI+ NA T++P TS FG GL+P GA++NHSC P+ + ++ + LR + R G+EL +YL GTV++RR LL +GF C C+ C++E+ +K+++R
Sbjct: 16 GRCYLATRNVSAGETVLRCAPIAAALHDRDVPKRCSRCFAPTDGVPCT--CHAI---FCSTCAKSSDAKREHRGECMAVKLALSDRKTRNALGLKSKSSTGTATTFLRLAVRLLSVRARHSRSKPVLLLGDPDGDGEW--IPSADEDVIHDSWEDVEELSPETDEALEALLARLQKGRVEELEGGVNAVRLLSGSRRASWDDVFRLLCRISMNAMTLAPEAQVRRALTSSKSRWKDFGI--GLYPSGAMLNHSCFPSCLWFV-------RSGTLIVETLRVV---RRGEELTIAYLPVS---GTVTQRRRRLLHAFGFHCVCSHCEAESNLQKKVQR 330
BLAST of mRNA_E-fasciculatus_F_contig1326.2456.1 vs. uniprot
Match: A0A6H5KH60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH60_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 4.580e-11 Identity = 67/207 (32.37%), Postives = 98/207 (47.34%), Query Frame = 1
Query: 316 ARRSANLDARVEIRFDP---KRGRGLFALRDIPAGTEVMRVPAAAAVLLDRSKSS-CGGCLLPTDTVGSLKKCHGFPLSFCAG-CIKAG--------TVGGVSGVHSSATRELTKELNTICATSSGVDKDSLRLAADVFVRRKAGLLDDSEWGFLNSLESHDNEAHTM-----SLAPAELQKCTRLFKTLVDINISDEEVQAMYRRQ 882
ARR LD R ++R +P KRGRG+FA+ +PAGTEV+ AAA+ DR + + C CL D L KC FC C+ A T G V G+ EL + N ++ + D LRL + RR AGL D+ EW ++ L ++E +L P +++ + +S EE+Q ++RRQ
Sbjct: 114 ARRRGQLDPRFQVRRNPARPKRGRGIFAVEAVPAGTEVLVARQAAALPRDRYRPAFCRRCLTLLDK-SLLIKCRRCEDRFCGKECVIAAAGEGTHEVTCGMVEGLGEEQLSELGRGDN-----AAATETDILRLTVECMSRRGAGLSDEEEWIEIDDLVLPEDEGXXXXXXGGTLEPDVIREAQARLND-GGLEVSAEEIQTVHRRQ 313
BLAST of mRNA_E-fasciculatus_F_contig1326.2456.1 vs. uniprot
Match: A0A397UIR2_9GLOM (Uncharacterized protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397UIR2_9GLOM) HSP 1 Score: 75.5 bits (184), Expect = 1.050e-10 Identity = 80/325 (24.62%), Postives = 141/325 (43.38%), Query Frame = 1
Query: 346 VEIRFDPKRGRGLFALRDIPAGTEVMRVPAAAAVLLDRSKS-SCGGCL-LPTDTVGSLKKCHGFPLSFC-AGCIKAGTVGGVSGVHSSATRELTKELNTICATSSGVDKDSLR---LAADVFVRRKAGLLDDSEWGFLNSLESHDN-------EAHTMSLAPAELQKCTRLFKTLVDINISDEEVQAMYRRQAAVFGATTRQKCRITRNAHTVSPNTSKPGFGSVQGLFPCGALVNHSCLPNTFFHCVAEPSSPEGRPVVKQVLRSICNIRAGDELCCSYLSSGAAVGTVSERRDLLMGWGFRCACARCQSE------AEEEKRL 1263
+ + +P R L L+ IP G+ ++ P+ A + + C CL +P + + + +CH +C C K H + K+ S +D++ LR L + ++++K+ ++E L L N +H P +L+K FK++ SD ++Q + + + + CR + N + N P FG +G + G+L+NHSC PN + G Q+LRSI NI+AG+E+ SY+ A+ S ++ L + F+C C RC S+ EEE+++
Sbjct: 13 LSLEENPTTYRALKTLKHIPKGSTIITSPSLACFPIPSMINVRCNNCLEIPIEPLKTCSRCH--KTFYCNVKCQKLAW-----SAHHKILCPIYKKEGNKTLDSDYMDEEMLRRIALRIEKYLKKKS--YHETETVSLTGLNEKVNCETFLTLMSHREKRTPEQLEK----FKSIAKNVFSDLDLQNITQDELITY------LCRFSCNNFNLDDNQLFP-FG--EGTYSIGSLINHSCRPNAIMMYSIGQQTNSG----SQILRSIENIKAGEEITISYID--VAMSRTSRQKLLNEKYFFKCQCPRCSSDNVSIDITEEERKV 309
BLAST of mRNA_E-fasciculatus_F_contig1326.2456.1 vs. uniprot
Match: A0A7S1HKR9_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HKR9_HEMAN) HSP 1 Score: 67.4 bits (163), Expect = 2.010e-8 Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 1
Query: 985 GLFPCGALVNHSCLPNTFFHCVAEPSSPEGRPVVKQVLRSICNIRAGDELCCSYLSSGAAVGTVSERRDLLMGWGFRCACARC 1233
G++P GA++NHSC PN + EP + +QV+R+I +R GDELC SY+ + +A ER L + +GF+CAC RC
Sbjct: 235 GVYPLGAILNHSCAPNCVLYY--EPRTH------RQVIRAISAVREGDELCHSYIDAASATPQRLER--LSICYGFQCACQRC 307
BLAST of mRNA_E-fasciculatus_F_contig1326.2456.1 vs. uniprot
Match: K3W5M6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W5M6_GLOUD) HSP 1 Score: 64.7 bits (156), Expect = 2.530e-7 Identity = 77/305 (25.25%), Postives = 123/305 (40.33%), Query Frame = 1
Query: 367 KRGRGLFALRDIPAGTEVMRVPAAAAVLLDRSKSSCGGCLLPTDTVGSLKKCHG-FPLSFCAGCIKAGTVGGVSGVHSSATRELTKELNTICATSSGVDKDSL-------RLAADVFVRRKAGLLDDSEWGFLNSLESHDNEAHTMSLAPAELQKCTRLFKTLVDINISDEEVQAMYRRQAAVFGATTRQKCRITRNAHTVSPNTSKP-GFGSVQGLFPCGALVNHSCLPNTFFHCVAEPSSPEGRPVVKQVLRSICNIRAGDELCCSYLSSGAAVGTVSERRDLLM-GWGFRCACARCQSEAEE 1251
++GRG A + I GT +++ A+A++ S S C C T L KC G + +C+ K + G+H TKE V S+ R+AA +F+ + D L +D+ ++ + L N + + + G + CR+ NA T+S + P G G +FP GAL NHSC PN CV + V+ +I +++ GDEL SY+ + + S+R+ L + F C C+RC+ A E
Sbjct: 11 RKGRGALARQLIATGTRILQTSASASI----SASCCNWCF-STPQTQKLHKCGGCHRVKYCSR--KCQQLDWTRGLH-------TKECAAWKHVPKHVQGKSMQTVLLVTRMAAKLFLSDQEQTTDGQS--VLQLCHHYDDHGEGKLQQYHDMMQLVLLLLARSKFNTRGASFEEL---AELLEGKIVQLFCRVNCNAFTISDDLCTPLGIG----VFPHGALFNHSCDPN----CVVSFQQQQ------MVVHTIKDVQQGDELTISYIE---LLESTSKRQQALRESYFFECDCSRCRDAASE 279
BLAST of mRNA_E-fasciculatus_F_contig1326.2456.1 vs. uniprot
Match: A0A835T5G6_CHLIN (SET domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835T5G6_CHLIN) HSP 1 Score: 65.1 bits (157), Expect = 2.870e-7 Identity = 37/86 (43.02%), Postives = 49/86 (56.98%), Query Frame = 1
Query: 985 GLFPCGALVNHSCLPNTFFHCVAEPSSPEGRPVVKQVLRSICNIRAGDELCCSYLSSGAAVGTVSERRDLLMGWGFRCACARCQSE 1242
GL+ AL+NHSC P +CV GR +V +R++ IRAG+E+C SYL A RR LL +GF CAC+RC+ E
Sbjct: 377 GLWTEHALINHSCAPAVCQYCV-------GRTMV---VRAVRRIRAGEEVCDSYLGPELAAPLQVRRRALLAQYGFTCACSRCRLE 452
BLAST of mRNA_E-fasciculatus_F_contig1326.2456.1 vs. uniprot
Match: W9WIN5_9EURO (MYND-type zinc finger protein samB n=1 Tax=Cladophialophora yegresii CBS 114405 TaxID=1182544 RepID=W9WIN5_9EURO) HSP 1 Score: 63.5 bits (153), Expect = 6.680e-7 Identity = 77/305 (25.25%), Postives = 123/305 (40.33%), Query Frame = 1
Query: 337 DARVEIRFDPKRGRGLFALRDIPAGTEVMRVPAAAAVLLDRSK--SSCGGCLLP-TDTVGSLKKCHGFPLSFCAGCIKAGTVGGVSGVHSSATRELTK-ELNTICATSSGVDKDSLRLAADVFVRRKAGLLDDSEWGFLNSLESHDNEAHTMSLAPAELQKCTRLFKTLVDINISDEEVQAMYRRQAAVFGATTRQKCRITRNAHTVSPNTSKPGFGSVQGLFPCGALVNHSCLPNTFFHC-VAEPSSPEGRPVVKQV-LRSICNIRAGDELCCSYLSSGAAVGTVSERRDLLMGWGFRCACARC 1233
D +V + RG GLF + I ++++ + + L+ +K + C C D + +++ G L C GC S A E + E + ++R V + KAGLL +SEW L SLESH + +S + Q + K + +D + + R C + N+ T++ P G V L P ALVNHSC PNTF +A+ S + P + L ++ I +E+ SY+ + V E +L + F C C C
Sbjct: 11 DDQVRTKHVQGRGNGLFVTQQITPNSQILFIARPLLIALETAKLPTHCYFCYKSDVDPISAVEVDTGHALKTCTGCKVVRFCDRKC--QSRAWAEYHRLECKLFGRLHPRILPTTVRAIVRVLKQHKAGLLPESEWEQLLSLESHYGDL--ISAGGSRWQDIFIMMKGIKAYCGTDHSQETILRLA-----------CMLLVNSFTLTNPAFDP-LGMV--LHPQSALVNHSCDPNTFVRFDIAQQSDQDTLPPFGSISLHALRAISPDEEVTISYIDTTFPVAKRQE--ELRERYFFTCDCPLC 295
BLAST of mRNA_E-fasciculatus_F_contig1326.2456.1 vs. uniprot
Match: A0A5D6XYG2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYG2_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 1.050e-6 Identity = 83/305 (27.21%), Postives = 122/305 (40.00%), Query Frame = 1
Query: 340 ARVEIRFDPKRGRGLFALRDIPAGTEVMRVPAAAAVLLDRSKSSCGGCLLPTDTVGS----LKKCHGFP-LSFC-AGCIKAGTVGGVSGVHSSATRELTKELNTICATSSGVDKDSLRLAADVFVRRKAGLLDDSEWGFLNSLESHDNEAHTMSLAPAELQKCTRLFKTLVDINISDEEVQAMYRRQAAVFGATTRQKCRITRNAHTVSPNTSKP-GFGSVQGLFPCGALVNHSCLPNTFFHCVAEPSSPEGRPVVKQVLRSICNIRAGDELCCSYLSSGAAVGTVSERRDLLMGWGFRCACARC 1233
A V + RGR A + + AGT V++ A AA+ S +SC C G L +C G L +C A C + + G A + + S+R AA V A L+ G E AH A A+LQ+ + + + + + Y A+ T + CR+ NA T+S + P G G +FP GAL NHSC PN CV + + R +R+I ++ DEL SY+ T + ++ L + F C CARC
Sbjct: 4 ALVREQLRDGRGRCALAAQRVAAGTCVLQTRALAAI----SVTSCNWCFASASASGGGSARLSRCGGCRRLRYCSAACQRRDWIDGGHARECGAWKRIPA---------------SVRDAALQTVLLVARLV---AAGAHKQPEVAQLRAHYEEHAEAKLQQFREMALLVRSLLPAVD-----YPTDDALLRDTVQLLCRVNCNAFTISDDACAPVGIG----VFPHGALFNHSCAPN----CVVSFAGQDMR------VRAIADVAPDDELTISYVE--LLETTATRQQALRESYFFDCDCARC 265 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1326.2456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1326.2456.1 >prot_E-fasciculatus_F_contig1326.2456.1 ID=prot_E-fasciculatus_F_contig1326.2456.1|Name=mRNA_E-fasciculatus_F_contig1326.2456.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=570bp MPSFHEGCLVLFRSTGLLYTVVRWDEETALLQLAPAASRTNHREDSSNADback to top mRNA from alignment at E-fasciculatus_F_contig1326:13842..17393- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1326.2456.1 ID=mRNA_E-fasciculatus_F_contig1326.2456.1|Name=mRNA_E-fasciculatus_F_contig1326.2456.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3552bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1326:13842..17393- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1326:13842..17393- >mRNA_E-fasciculatus_F_contig1326.2456.1 ID=mRNA_E-fasciculatus_F_contig1326.2456.1|Name=mRNA_E-fasciculatus_F_contig1326.2456.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3420bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1326:13842..17393- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |