mRNA_E-fasciculatus_F_contig13257.2452.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13257.2452.1
Unique NamemRNA_E-fasciculatus_F_contig13257.2452.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13257.2452.1 vs. uniprot
Match: D7FP69_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP69_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 1.380e-36
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:   10 ISLSSMIDADWTIGRERADVAGKILADALLNREQGCRPVTLVGTSLGARLIFACLEEIARRHELWEEQ 213
            ISLSSMIDADWTIGRERADVAGKILADALLNREQGCRPVTLVGTSLGARLIFACLEEIARRHELWEEQ
Sbjct:  679 ISLSSMIDADWTIGRERADVAGKILADALLNREQGCRPVTLVGTSLGARLIFACLEEIARRHELWEEQ 746
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BLAST of mRNA_E-fasciculatus_F_contig13257.2452.1 vs. uniprot
Match: A0A835Z4D9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4D9_9STRA)

HSP 1 Score: 103 bits (256), Expect = 7.680e-25
Identity = 46/66 (69.70%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:   10 ISLSSMIDADWTIGRERADVAGKILADALLNREQGCRPVTLVGTSLGARLIFACLEEIARRHELWE 207
            ++L+  ID+DW IG ERAD AGK+LA  LL+REQG RPVTL+GTS+GARL+F+CLEE+ RRHELWE
Sbjct:   58 VALADYIDSDWAIGCERADKAGKVLAGILLSREQGTRPVTLIGTSIGARLMFSCLEEMVRRHELWE 123
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BLAST of mRNA_E-fasciculatus_F_contig13257.2452.1 vs. uniprot
Match: A0A7S2URA8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2URA8_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 6.170e-17
Identity = 38/68 (55.88%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:   10 ISLSSMIDADWTIGRERADVAGKILADALLNREQGCRPVTLVGTSLGARLIFACLEEIARRHELWEEQ 213
            ++ ++MID  WT+  ERAD AG+ LA +LL+   G RPVTLVG S+GAR I+ACL+E+A+  E WEEQ
Sbjct:   51 VAAANMIDGTWTLAIERADEAGEELAKSLLHSTAGHRPVTLVGFSMGARTIYACLKELAKHQEKWEEQ 118
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BLAST of mRNA_E-fasciculatus_F_contig13257.2452.1 vs. uniprot
Match: A0A7S4APD7_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4APD7_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.380e-16
Identity = 39/67 (58.21%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:   10 ISLSSMIDADWTIGRERADVAGKILADALLNREQGCRPVTLVGTSLGARLIFACLEEIARRHELWEE 210
            ++L+ MID DWTI  ERAD AG +LA  LL    G RPVTLVG S GAR+I++CL+E+AR  E WE+
Sbjct:  973 LNLAHMIDGDWTIAVERADEAGVVLAKTLLYSRAGRRPVTLVGYSFGARIIYSCLKELARYQEEWEQ 1039
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BLAST of mRNA_E-fasciculatus_F_contig13257.2452.1 vs. uniprot
Match: A0A448YWK7_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YWK7_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.580e-16
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:   10 ISLSSMIDADWTIGRERADVAGKILADALLNREQGCRPVTLVGTSLGARLIFACLEEIARRHELWE 207
            ++L+ MID DWTI  ERAD AG +LA  LL    G RPVTLVG S GAR+I++CL+E+AR  E WE
Sbjct:  995 LNLAHMIDGDWTIAVERADEAGVVLAKTLLYSRAGRRPVTLVGYSFGARIIYSCLKELARYQEEWE 1060
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BLAST of mRNA_E-fasciculatus_F_contig13257.2452.1 vs. uniprot
Match: A0A1E7F6H0_9STRA (DUF726-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F6H0_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.580e-16
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:   10 ISLSSMIDADWTIGRERADVAGKILADALLNREQGCRPVTLVGTSLGARLIFACLEEIARRHELWE 207
            ++L+ MID DWTI  ERAD AG +LA  LL    G RPVTLVG S GAR+I++CL+E+AR  E WE
Sbjct: 1002 LNLAHMIDGDWTIAVERADEAGVVLAKTLLYSRAGRRPVTLVGYSFGARIIYSCLKELARYQEEWE 1067
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BLAST of mRNA_E-fasciculatus_F_contig13257.2452.1 vs. uniprot
Match: UPI00065B96BA (transmembrane and coiled-coil domain-containing protein 4 isoform X1 n=5 Tax=Aplysia californica TaxID=6500 RepID=UPI00065B96BA)

HSP 1 Score: 79.7 bits (195), Expect = 8.900e-16
Identity = 35/61 (57.38%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:   10 ISLSSMIDADWTIGRERADVAGKILADALLNREQGCRPVTLVGTSLGARLIFACLEEIARR 192
            +S S++ID  W++  +RA  AG++LA+ LL+REQG RPVTL+G SLGAR+IF+CLEE+ +R
Sbjct:  389 VSASNIIDNPWSVALQRAQAAGRMLAEVLLSREQGNRPVTLIGYSLGARVIFSCLEELCKR 449
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BLAST of mRNA_E-fasciculatus_F_contig13257.2452.1 vs. uniprot
Match: A0A6G1K4H5_9PLEO (DUF726-domain-containing protein n=1 Tax=Pleomassaria siparia CBS 279.74 TaxID=1314801 RepID=A0A6G1K4H5_9PLEO)

HSP 1 Score: 79.7 bits (195), Expect = 8.980e-16
Identity = 36/59 (61.02%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:   16 LSSMIDADWTIGRERADVAGKILADALLNREQGCRPVTLVGTSLGARLIFACLEEIARR 192
            LS +ID  WT+ + RAD+AG ILAD+L++R  G RP+TLVG SLGAR+IF+CL+E+A+R
Sbjct:  876 LSYLIDNPWTVSQARADMAGLILADSLIDRNLGSRPITLVGFSLGARVIFSCLQELAKR 934
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BLAST of mRNA_E-fasciculatus_F_contig13257.2452.1 vs. uniprot
Match: A0A2C9JQT8_BIOGL (Uncharacterized protein n=5 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9JQT8_BIOGL)

HSP 1 Score: 79.3 bits (194), Expect = 1.210e-15
Identity = 38/71 (53.52%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    1 SRQISLSSMIDADWTIGRERADVAGKILADALLNREQGCRPVTLVGTSLGARLIFACLEEIARRHELWEEQ 213
            S  IS ++ ID  W++  +RA  AGK LA+ LL REQG RPVTL+G SLGAR+IF+CLEE+++R +  E +
Sbjct:  356 SALISAANFIDNPWSVALQRAQTAGKALAEVLLAREQGNRPVTLIGFSLGARVIFSCLEELSKRKDSEETE 426
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13257.2452.1 vs. uniprot
Match: W7TZH7_9STRA (Uncharacterized protein n=5 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZH7_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.220e-15
Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:   10 ISLSSMIDADWTIGRERADVAGKILADALLNREQGCRPVTLVGTSLGARLIFACLEEIARRHELWEE 210
            +  + MID  WTI  E+AD AG++LA  L+ +E+G RP+ L+G S+GARLI ACL E+AR H  WE+
Sbjct:  656 LQAADMIDNSWTIACEKADRAGQLLAQILVRKERGHRPIVLIGFSMGARLIMACLSELARIHNSWED 722
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13257.2452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP69_ECTSI1.380e-36100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z4D9_9STRA7.680e-2569.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2URA8_9STRA6.170e-1755.88Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S4APD7_9STRA1.380e-1658.21Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A448YWK7_9STRA2.580e-1659.09Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A1E7F6H0_9STRA2.580e-1659.09DUF726-domain-containing protein n=1 Tax=Fragilari... [more]
UPI00065B96BA8.900e-1657.38transmembrane and coiled-coil domain-containing pr... [more]
A0A6G1K4H5_9PLEO8.980e-1661.02DUF726-domain-containing protein n=1 Tax=Pleomassa... [more]
A0A2C9JQT8_BIOGL1.210e-1553.52Uncharacterized protein n=5 Tax=Biomphalaria glabr... [more]
W7TZH7_9STRA1.220e-1552.24Uncharacterized protein n=5 Tax=Nannochloropsis ga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13257contigE-fasciculatus_F_contig13257:2592..3666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.3
Seed ortholog evalue1.5e-28
Seed eggNOG ortholog2880.D7FP69
Preferred nameTMCO4
KEGG koko:K14773
GOsGO:0003674,GO:0003824,GO:0005575,GO:0006810,GO:0008150,GO:0016020,GO:0016021,GO:0016192,GO:0016298,GO:0016787,GO:0016788,GO:0031224,GO:0044425,GO:0051179,GO:0051234
EggNOG free text desc.Protein of unknown function (DUF726)
EggNOG OGsKOG2385@1,KOG2385@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Exons2
Model size213
Cds size189
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13257.2452.1prot_E-fasciculatus_F_contig13257.2452.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13257 2616..3666 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927829.0288904-UTR-E-fasciculatus_F_contig13257:2591..26151622927829.0288904-UTR-E-fasciculatus_F_contig13257:2591..2615Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13257 2592..2615 +
1695995712.3732913-UTR-E-fasciculatus_F_contig13257:2591..26151695995712.3732913-UTR-E-fasciculatus_F_contig13257:2591..2615Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13257 2592..2615 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927829.0657663-CDS-E-fasciculatus_F_contig13257:2615..27021622927829.0657663-CDS-E-fasciculatus_F_contig13257:2615..2702Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13257 2616..2702 +
1695995712.388755-CDS-E-fasciculatus_F_contig13257:2615..27021695995712.388755-CDS-E-fasciculatus_F_contig13257:2615..2702Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13257 2616..2702 +
1622927829.0814266-CDS-E-fasciculatus_F_contig13257:3564..36661622927829.0814266-CDS-E-fasciculatus_F_contig13257:3564..3666Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13257 3565..3666 +
1695995712.3978875-CDS-E-fasciculatus_F_contig13257:3564..36661695995712.3978875-CDS-E-fasciculatus_F_contig13257:3564..3666Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13257 3565..3666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13257.2452.1

>prot_E-fasciculatus_F_contig13257.2452.1 ID=prot_E-fasciculatus_F_contig13257.2452.1|Name=mRNA_E-fasciculatus_F_contig13257.2452.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=63bp
MIDADWTIGRERADVAGKILADALLNREQGCRPVTLVGTSLGARLIFACL
EEIARRHELWEEQ
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mRNA from alignment at E-fasciculatus_F_contig13257:2592..3666+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13257.2452.1 ID=mRNA_E-fasciculatus_F_contig13257.2452.1|Name=mRNA_E-fasciculatus_F_contig13257.2452.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1075bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13257:2592..3666+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCTCGCCAGATTTCGCTCTCAAGCATGATCGACGCTGATTGGACGATCGG
GAGGGAACGTGCGGACGTCGCAGGAAAGATTCTGGCCGACGCGCTGCTTA
ACAGGGAGCAGGTAAGATCCACAGAGGAGGCACGCCAAACCCGTACGTAG
TGAATATATGCTGCTGTCTCGTGTGCGGGGCCCTCAGGACCACGACACAG
TATATGAGTTCTAGTATATCACACTTAAAAGACACATGCAATATGGCCGT
TTAAACGCCCAATGTAGTCCATCCCACGCTATGCTCCGAAGCCTGGCTAT
CACGGTTTGAGAATGAAGTTGCTCTTTTTCCTTCTCTGTTCACGGGGGAA
GTTTATTTGCTCTTCTGTCAAGCCATTTCAGGTTTATATTAACTCCATGC
CTTTTTGCTCTGGAGACACACTTGACTAGCTGCTGTGGTGGATATGGTCA
CATCCCCGCGATGTCTGTCGAGAACGACCCCCTTTTCTCACGTAACGACG
GAAAGAATCGGGGTTGGAATTACGCCGCACATGCTTCTCTTGACGATAGA
GTGCGGGATGATTACTCCAACCTAAAGTTCCTCCTCGATGTACTGATGAA
TTGTCCGTCGTTTTGTCCATGCATCTCTTGCGTTGTCACGTGGCCTGATC
GTTCGATGACGTTATTGCTATGGGGGATGAATGACTGCATTTCGATGGCC
GGCCGAAAGTTGGAGCGAAATCTGATTTGCAGGCGTTGATGTTCGAACGA
TGGAAAGGTGCATCTGGAATGCGCCCCCAATCAACAGCAAAAGGCACGAG
CCTCTAGAAAAGACAACAACACGAGTGACGAACGAACTCATTAGATTGAC
TAAGGTCGCAATGCTTGGCTAGGTTTTTTGTACGGTAAACGTTTTCTGAG
GCGGTCTGTCTGACAAGACGCTTTGCTCGTTGTTTGTTGTGTACGAACGC
GTTTGGTCGCCGGCTCTCGTCAGGGGTGCCGCCCTGTCACCCTGGTGGGG
ACCTCTCTGGGAGCCCGGCTAATCTTCGCCTGTCTCGAGGAGATCGCTAG
GCGACACGAGCTTTGGGAGGAGCAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13257:2592..3666+

>mRNA_E-fasciculatus_F_contig13257.2452.1 ID=mRNA_E-fasciculatus_F_contig13257.2452.1|Name=mRNA_E-fasciculatus_F_contig13257.2452.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=378bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13257:2592..3666+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATCGACGCTGATTGGACGATCGGGAGGGAACGTGCGGACGTCGCAGG
AAAGATTCTGGCCGACGCGCTGCTTAACAGGGAGCAGATGATCGACGCTG
ATTGGACGATCGGGAGGGAACGTGCGGACGTCGCAGGAAAGATTCTGGCC
GACGCGCTGCTTAACAGGGAGCAGGGGTGCCGCCCTGTCACCCTGGTGGG
GACCTCTCTGGGAGCCCGGCTAATCTTCGCCTGTCTCGAGGAGATCGCTA
GGCGACACGAGCTTTGGGAGGAGCAGGGGTGCCGCCCTGTCACCCTGGTG
GGGACCTCTCTGGGAGCCCGGCTAATCTTCGCCTGTCTCGAGGAGATCGC
TAGGCGACACGAGCTTTGGGAGGAGCAG
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