mRNA_E-fasciculatus_F_contig13256.2451.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13256.2451.1
Unique NamemRNA_E-fasciculatus_F_contig13256.2451.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13256.2451.1 vs. uniprot
Match: D7G7L6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L6_ECTSI)

HSP 1 Score: 341 bits (874), Expect = 2.850e-105
Identity = 178/182 (97.80%), Postives = 182/182 (100.00%), Query Frame = 1 
Query:    1 VRAQPKAGAAELGKVFGKDSIVMATGIEGDYISMAHQDRDDPASPPLRGWMLTATDDRVLLSVKPAFLVVPAPGLPEGVQLRVRAAPEGTAAEVKQVSAAPGTIFEVAEQSAEWLRVLMGDAASAWMSSSAQGMPLLKPARKDVFIMDPALAAKHGDAVKLAVRAAPSQDGAPLGEITSKGR 546
            VRAQPKAGAAELGKVFGKDS+VMATG+EGDYISMAHQDRDDPASPPLRGWMLTATDDRVLLSVKPAFLVVPAPGLP+GVQLRVRAAPEGTAAEVKQVSAAPGTIFEVAEQSAEWLRVLMGDAASAWMSSSAQGMPLLKPAR+DVFIMDPALAAKHGDAVKLAVRAAPSQDGAPLGEITSKGR
Sbjct:   98 VRAQPKAGAAELGKVFGKDSLVMATGMEGDYISMAHQDRDDPASPPLRGWMLTATDDRVLLSVKPAFLVVPAPGLPDGVQLRVRAAPEGTAAEVKQVSAAPGTIFEVAEQSAEWLRVLMGDAASAWMSSSAQGMPLLKPARRDVFIMDPALAAKHGDAVKLAVRAAPSQDGAPLGEITSKGR 279
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13256.2451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7L6_ECTSI2.850e-10597.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13256contigE-fasciculatus_F_contig13256:478..3320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size546
Cds size546
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13256.2451.1prot_E-fasciculatus_F_contig13256.2451.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13256 478..3320 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927828.9575386-CDS-E-fasciculatus_F_contig13256:477..5751622927828.9575386-CDS-E-fasciculatus_F_contig13256:477..575Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13256 478..575 +
1695995712.3323267-CDS-E-fasciculatus_F_contig13256:477..5751695995712.3323267-CDS-E-fasciculatus_F_contig13256:477..575Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13256 478..575 +
1622927828.9696572-CDS-E-fasciculatus_F_contig13256:1324..15051622927828.9696572-CDS-E-fasciculatus_F_contig13256:1324..1505Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13256 1325..1505 +
1695995712.3418097-CDS-E-fasciculatus_F_contig13256:1324..15051695995712.3418097-CDS-E-fasciculatus_F_contig13256:1324..1505Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13256 1325..1505 +
1622927828.9820604-CDS-E-fasciculatus_F_contig13256:1988..21591622927828.9820604-CDS-E-fasciculatus_F_contig13256:1988..2159Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13256 1989..2159 +
1695995712.3557723-CDS-E-fasciculatus_F_contig13256:1988..21591695995712.3557723-CDS-E-fasciculatus_F_contig13256:1988..2159Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13256 1989..2159 +
1622927828.9968987-CDS-E-fasciculatus_F_contig13256:3224..33201622927828.9968987-CDS-E-fasciculatus_F_contig13256:3224..3320Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13256 3225..3320 +
1695995712.364956-CDS-E-fasciculatus_F_contig13256:3224..33201695995712.364956-CDS-E-fasciculatus_F_contig13256:3224..3320Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13256 3225..3320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13256.2451.1

>prot_E-fasciculatus_F_contig13256.2451.1 ID=prot_E-fasciculatus_F_contig13256.2451.1|Name=mRNA_E-fasciculatus_F_contig13256.2451.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=182bp
VRAQPKAGAAELGKVFGKDSIVMATGIEGDYISMAHQDRDDPASPPLRGW
MLTATDDRVLLSVKPAFLVVPAPGLPEGVQLRVRAAPEGTAAEVKQVSAA
PGTIFEVAEQSAEWLRVLMGDAASAWMSSSAQGMPLLKPARKDVFIMDPA
LAAKHGDAVKLAVRAAPSQDGAPLGEITSKGR
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mRNA from alignment at E-fasciculatus_F_contig13256:478..3320+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13256.2451.1 ID=mRNA_E-fasciculatus_F_contig13256.2451.1|Name=mRNA_E-fasciculatus_F_contig13256.2451.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2843bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13256:478..3320+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTCGGGCACAGCCGAAGGCCGGCGCCGCGGAGCTGGGCAAGGTGTTTGG
GAAGGATTCCATCGTCATGGCCACCGGGATAGAGGGGGACTACATCAGGT
GGGGATCAATGGGGGCGTAGCTGCCTTCGATGGTTTGATGGTTTGACCAC
TGAGCATGCGTCCTCCACAGGACGGAGCAGGGGCCGACCAACGAAGGACA
CTCGTCCCTTCCTAGTTTTCTTTCCCGAATGTGTGGGGGGGGGAGGCATG
GTGGACTGCTGTTGTGTGTCTGGTGCTCTGGGGAACCGTCACAAGTCGAC
GCAACATTTTGATGCGGAAATGGATCACTGCTGTTTCGTACGGTGGGTTT
TGGTAGTGTTGTCCGAGGCATATTTTGGTTAGGGTGTTTCGTGCAGTTGT
GATGCTCTTTCTCTCCGGTCATTCCCGCTTGAAACCGAAACCGCTTTCCT
GGCGGTTTAGGCCGATATCCGACCTAGACCCAAATCCTTCGAGGAGCTTC
GACGAAGCTCGAAACGGTCTCGACCCGTCCCACGGCAGCTATCGTTCCAG
CAGCCTCTCTGTCGATCAATCTTCCATTCCATTGGTATTTGTTTCGGTAG
AGCACATGTTTCATCATGGTCATACCGTTCCATGACAACCAAGACAAGAG
CGCCTATTTTGTAAGCAGCCGCCGCCCCCTGTCGCCAATTCCGAGCGCAT
ATCCCGACACTTTTTTCTCGCTGCTGGCCATAAATATTAGCTGTTTTCAG
AGTGTCCTTGGGACAGCCCGTCGATACCACGGAACCCCCATGAGTGTGAC
CCAGCTGGTGTGACCCAACGACAATCCCCCCACCTCCCGTTATTCAGCAT
GGCCCACCAGGATCGCGACGATCCCGCGTCGCCCCCGCTCCGAGGGTGGA
TGCTGACGGCCACCGACGACCGGGTCCTCCTGTCGGTGAAGCCGGCCTTC
TTGGTGGTGCCGGCGCCGGGCCTGCCGGAAGGGGTGCAGCTGAGGGTGCG
CGCCGCCCCGGAGGGCACCGCCGCTGAGGTGAGGAAGTCAAGCATCATGG
TTGCCAAAGCGTGTTGTTGTTGACGGTGGCGTGTCGCTTTGGGGGTGTAG
TGGCAGGAATGTCGTCAAGGGCTGGAAGGGACTGCTGTGGTTTTCGATTG
TTGCTGCGGTTGCTGGTTGTTGCTGGTGTCGTCTTTGCGGAGTGCTGGTG
TTGCCACCATGGCTACAACCCCTTGTATTTATTAGTGGTCCGATTGTATC
GCGGTGAAGTGACAAGACAATTATCACCTCGTTGTATCGGGACCCGCGCT
ATTGGGGGAAGCAAGGTCCCTGAACAGAAATTTGGGAGTTGTGCCAACGG
GTTTTTACCGCGATGTGTCGGGAACCGCTAGTCGGGACCGCAATATATCT
GGGCCACGATTGTACCAGTTTCTTGTTCCTTCTTTTTCTGCGAATGCTGA
TGCTGCCACCCGCCTCTTGGCACTGGGCGACTTACATGTACTGCTGGTGC
GTCGTCAACAGGTGAAGCAGGTGTCGGCCGCCCCGGGGACAATATTCGAG
GTGGCCGAGCAGTCGGCGGAGTGGCTGAGGGTTTTGATGGGAGACGCGGC
GTCGGCTTGGATGTCGTCCTCCGCCCAGGGGATGCCGCTCCTCAAGCCGG
CCAGAAAAGACGTCTTCATCATGGACCCTGCGGTAGGCGAAGAGTCTAGG
CTTGTACTCCGCACGCGTTTTTTTTTTCGATTTAGATGCACGAACGTTTC
TTGACTGTGTTTTCAGTGTAACAACCAGAATCGGCAAGTGGAAGTACCAC
AAGGTAGTTGCCTACGGAGTACAAGCCTAAAAGGGTCAATCTCCCGAGCA
CTGGTTTGGGCTTGGGCCCTTTGGTATTCTTAGATACGAGGGTGCCCGGC
TGGTTCATGTGGCTTCGCGGCTCGTGTGCTGGGGCTTGCCCGCTTTCAGT
CGGCATTTGTTTTCGAGCAACCCTTGCGCTTCTATGCAAGAAATGGGCTG
TTTTTTGCGGAGTCTAAGGCTGCGGCACTCGAGTTTCCGAAGAGTGTGAG
CAAAGCATTTACGCATGAACCGGCGGGAGCAAAAATATTTCACTGGAAGC
AACAACCAACAACAGCATTAACTGGCGTTGCGGGTTGGTGGCCCTGCCAA
TCGCCGCCAACGGCCGTCAATTCGAGAACAAACAAAGACCAGAGTTCAGC
GCAACTAGTCCGCTTCCATCCCCAGCAAGCAGCGCGGACTTTCTTTGACA
GCTACTTGCTGAGGATGGAGACGGACGAGTTGCGCTGAACGCTGGTCTTT
GTTAGTTCTCGAATTGACGGCCGTCGGTGGCGATTGGTAGGGTAACCCAC
CCGCAACGCCAGACGCTTTTGTTGCTGTTGTTTGTTGTTGCTCCAGAGAA
CTAATTTTGTTTCCCACAGGTTCGTGTTTAAATACTGTGCCTTCGCTCTT
ACAATCGTGTCTCTCGCTTTTGTCGTAGTATGTTGTGCGGCGTCCCGCCT
TGGCCTTGTATCTGTCCTTGGCACATGCAGTCGTTTCAGAGTGTCGCCGG
AACGGCTTCCACTCAAGTCGTTTTTGGAGGGACTGTAGCCCCTTGACCAA
TGGCTGACAAGCATTTTTGCGACTTTATTTTTGTGGAGGGGCTGGGTACT
AGGGTTAGGGTTAAATCGTTTGTTCCGTCGAACGACTCTTGAGTTGCTTC
GCTGTTCGCCTTGGCGTTGCTCCGTTCCGCACTTTTTCGACCGGCAGCTT
GCGGCGAAGCACGGAGACGCGGTAAAGCTCGCGGTGAGGGCGGCTCCCTC
CCAGGACGGGGCTCCGCTGGGAGAGATCACCAGCAAAGGGAGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13256:478..3320+

>mRNA_E-fasciculatus_F_contig13256.2451.1 ID=mRNA_E-fasciculatus_F_contig13256.2451.1|Name=mRNA_E-fasciculatus_F_contig13256.2451.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1092bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13256:478..3320+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTCGGGCACAGCCGAAGGCCGGCGCCGCGGAGCTGGGCAAGGTGTTTGG
GAAGGATTCCATCGTCATGGCCACCGGGATAGAGGGGGACTACATCAGGT
TCGGGCACAGCCGAAGGCCGGCGCCGCGGAGCTGGGCAAGGTGTTTGGGA
AGGATTCCATCGTCATGGCCACCGGGATAGAGGGGGACTACATCAGCATG
GCCCACCAGGATCGCGACGATCCCGCGTCGCCCCCGCTCCGAGGGTGGAT
GCTGACGGCCACCGACGACCGGGTCCTCCTGTCGGTGAAGCCGGCCTTCT
TGGTGGTGCCGGCGCCGGGCCTGCCGGAAGGGGTGCAGCTGAGGGTGCGC
GCCGCCCCGGAGGGCACCGCCGCTGAGCATGGCCCACCAGGATCGCGACG
ATCCCGCGTCGCCCCCGCTCCGAGGGTGGATGCTGACGGCCACCGACGAC
CGGGTCCTCCTGTCGGTGAAGCCGGCCTTCTTGGTGGTGCCGGCGCCGGG
CCTGCCGGAAGGGGTGCAGCTGAGGGTGCGCGCCGCCCCGGAGGGCACCG
CCGCTGAGGTGAAGCAGGTGTCGGCCGCCCCGGGGACAATATTCGAGGTG
GCCGAGCAGTCGGCGGAGTGGCTGAGGGTTTTGATGGGAGACGCGGCGTC
GGCTTGGATGTCGTCCTCCGCCCAGGGGATGCCGCTCCTCAAGCCGGCCA
GAAAAGACGTCTTCATCATGGACCCTGCGGTGAAGCAGGTGTCGGCCGCC
CCGGGGACAATATTCGAGGTGGCCGAGCAGTCGGCGGAGTGGCTGAGGGT
TTTGATGGGAGACGCGGCGTCGGCTTGGATGTCGTCCTCCGCCCAGGGGA
TGCCGCTCCTCAAGCCGGCCAGAAAAGACGTCTTCATCATGGACCCTGCG
CTTGCGGCGAAGCACGGAGACGCGGTAAAGCTCGCGGTGAGGGCGGCTCC
CTCCCAGGACGGGGCTCCGCTGGGAGAGATCACCAGCAAAGGGAGGCTTG
CGGCGAAGCACGGAGACGCGGTAAAGCTCGCGGTGAGGGCGGCTCCCTCC
CAGGACGGGGCTCCGCTGGGAGAGATCACCAGCAAAGGGAGG
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