mRNA_E-fasciculatus_F_contig13242.2447.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13242.2447.1
Unique NamemRNA_E-fasciculatus_F_contig13242.2447.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13242.2447.1 vs. uniprot
Match: A0A6H5JQ17_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ17_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 4.880e-38
Identity = 100/146 (68.49%), Postives = 103/146 (70.55%), Query Frame = -3 
Query:  344 PAHQEVGDAMFAARGGGGRRGXXXXXXXXXXXXXXXXXGPPPPMKKMMRGGRPHPFAPXXXXAHMEGDHEAPGXXXXXXXGGPLFHPSHQHYAGVFDEDEGGHPGFHPHHAPPARWMAIRRGYGGGD--------GQQQRRDYYWG 757
            PAHQEVGDAMFAARGG GR G   XXXXXXXXXXXXXX  PPPMK MMRGGR      XXX AHME   +APG       G PLFHP HQHYA VFDEDE GHPG HPHH PP RWMAIR  +GGG         GQQQRRD+YWG
Sbjct:  364 PAHQEVGDAMFAARGGRGRHGSPHXXXXXXXXXXXXXXXXPPPMKGMMRGGRXXXXXXXXXPAHMEDPGDAPGGGGGGHRGVPLFHPVHQHYAEVFDEDERGHPGVHPHHGPP-RWMAIRNSHGGGYXXXXXXXVGQQQRRDFYWG 508
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BLAST of mRNA_E-fasciculatus_F_contig13242.2447.1 vs. uniprot
Match: D8LN68_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN68_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.170e-22
Identity = 51/71 (71.83%), Postives = 53/71 (74.65%), Query Frame = -3 
Query:  344 GGPLFHPSHQHYAGVFDEDEGGHPGFHPHHAPPARWMAIRRGYGGGD-------------GQQQRRDYYWG 517
            GGPLFHP+HQHYA VFDEDEGGHPGFHPHH PP RWMAIRR +GGG              GQQQRRDYYWG
Sbjct:  426 GGPLFHPAHQHYAEVFDEDEGGHPGFHPHHGPP-RWMAIRRAHGGGGYGGGYVGVFGGGVGQQQRRDYYWG 495
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13242.2447.1 vs. uniprot
Match: A0A6H5KB69_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB69_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.700e-21
Identity = 82/139 (58.99%), Postives = 86/139 (61.87%), Query Frame = -3 
Query:  380 AHQEVGDAMFAARGGGGRRGXXXXXXXXXXXXXXXXXGPPPPMKKMMRGGRPHPFAPXXXXAHMEGDHEAPGXXXXXXX--------------GGPLFHPSHQHYAGVFDEDEGGHPGFHPHHAPPARWMAIRRGYGGG 754
            AHQEVGDAMFAARGGG    XXXXXXXXXXX           MK+ MRGGRP  FAP             P XXXXXXX              GGPLFHP+HQHY  VFDED GGHPGF P+H PP RWMAIRR +GGG
Sbjct:  391 AHQEVGDAMFAARGGGRHXXXXXXXXXXXXX-----------MKRTMRGGRPQRFAPPRPSRSXXXXXXXPXXXXXXXXXXXXXXXXXXVDRRGGPLFHPAHQHYTEVFDEDGGGHPGFRPYHGPP-RWMAIRRAHGGG 517
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13242.2447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JQ17_9PHAE4.880e-3868.49PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LN68_ECTSI1.170e-2271.83PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KB69_9PHAE1.700e-2158.99PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13242contigE-fasciculatus_F_contig13242:2945..3703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size760
Cds size423
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927828.024233-UTR-E-fasciculatus_F_contig13242:2944..32801622927828.024233-UTR-E-fasciculatus_F_contig13242:2944..3280Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13242 2945..3280 +
1695995711.987477-UTR-E-fasciculatus_F_contig13242:2944..32801695995711.987477-UTR-E-fasciculatus_F_contig13242:2944..3280Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13242 2945..3280 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927828.042272-CDS-E-fasciculatus_F_contig13242:3280..37031622927828.042272-CDS-E-fasciculatus_F_contig13242:3280..3703Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13242 3281..3703 +
1695995711.9967098-CDS-E-fasciculatus_F_contig13242:3280..37031695995711.9967098-CDS-E-fasciculatus_F_contig13242:3280..3703Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13242 3281..3703 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13242.2447.1prot_E-fasciculatus_F_contig13242.2447.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13242 3281..3703 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13242.2447.1

>prot_E-fasciculatus_F_contig13242.2447.1 ID=prot_E-fasciculatus_F_contig13242.2447.1|Name=mRNA_E-fasciculatus_F_contig13242.2447.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=141bp
MLIPSSSPCAAAGHHRRRSPCGSPSSERGGRGGGGNRGGLPHPRRKPPRS
AGGKGGREGRRGDHRLRRRAPRGRPPCEPAEGEGRRGGGGRRASSFSSEG
AGRGGAGHRGGEGHRGGEGHRGGHRRRARQTWRRRPPGEPA
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mRNA from alignment at E-fasciculatus_F_contig13242:2945..3703+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13242.2447.1 ID=mRNA_E-fasciculatus_F_contig13242.2447.1|Name=mRNA_E-fasciculatus_F_contig13242.2447.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=759bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13242:2945..3703+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACAAAGAAACCACGATAGGCGAAACTCAAACCAATCAAGACTTTTTGACT
TGAAAGATGTTTCGGGTATCTACGCCTATCGTAGTGCTGCATGAGTGCAG
AAGCCAAACGGTGAAACGGTTCTCGTCTACTCAAAACCTTCCGTTCTCCA
CCCCTCGTATCAGTTTTTCCGAAGGAGGCTTCTGCCCAATTGCAAGTAGT
ACCGAAGGGCAAGGCTATACCAACTCAACTACTTCTCATGCCGTTCTTCA
AATCTTGTGCCACGAAACGCGGCACAAAGAGCAGAACGGTAGTAGACAGC
TAGGATCCCTCCTCCTTCAGCTTGACGGTGACGAAGATGCTCATCCCCAG
TAGTAGTCCCTGCGCTGCTGCTGGCCATCACCGCCGCCGTAGCCCCTGCG
GATCGCCATCCAGCGAGCGGGGGGGGCGTGGTGGGGGTGGAAACCGGGGT
GGCCTCCCTCATCCTCGTCGAAAACCCCCGCGTAGTGCTGGTGGGAAGGG
TGGAAGAGAGGGCCGCCGCGGCGACCACCGCCTCCGCCGCCGGGCGCCTC
GTGGTCGCCCTCCATGTGAGCCGGCGGAGGGGGAGGGGCGAAGGGGTGGG
GGCGGCCGCCGCGCATCATCTTTTTCATCGGAGGGGGCGGGCCGTGGCGG
TGCGGGACACCGTGGGGGTGAGGGGCACCGTGGCGGTGAGGGGCACCGCG
GCGGCCACCGCCGCCGCGCGCGGCAAACATGGCGTCGCCGACCTCCTGGT
GAGCCGGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13242:2945..3703+

>mRNA_E-fasciculatus_F_contig13242.2447.1 ID=mRNA_E-fasciculatus_F_contig13242.2447.1|Name=mRNA_E-fasciculatus_F_contig13242.2447.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=846bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13242:2945..3703+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTCATCCCCAGTAGTAGTCCCTGCGCTGCTGCTGGCCATCACCGCCG
CCGTAGCCCCTGCGGATCGCCATCCAGCGAGCGGGGGGGGCGTGGTGGGG
GTGGAAACCGGGGTGGCCTCCCTCATCCTCGTCGAAAACCCCCGCGTAGT
GCTGGTGGGAAGGGTGGAAGAGAGGGCCGCCGCGGCGACCACCGCCTCCG
CCGCCGGGCGCCTCGTGGTCGCCCTCCATGTGAGCCGGCGGAGGGGGAGG
GGCGAAGGGGTGGGGGCGGCCGCCGCGCATCATCTTTTTCATCGGAGGGG
GCGGGCCGTGGCGGTGCGGGACACCGTGGGGGTGAGGGGCACCGTGGCGG
TGAGGGGCACCGCGGCGGCCACCGCCGCCGCGCGCGGCAAACATGGCGTC
GCCGACCTCCTGGTGAGCCGGCGATGCTCATCCCCAGTAGTAGTCCCTGC
GCTGCTGCTGGCCATCACCGCCGCCGTAGCCCCTGCGGATCGCCATCCAG
CGAGCGGGGGGGGCGTGGTGGGGGTGGAAACCGGGGTGGCCTCCCTCATC
CTCGTCGAAAACCCCCGCGTAGTGCTGGTGGGAAGGGTGGAAGAGAGGGC
CGCCGCGGCGACCACCGCCTCCGCCGCCGGGCGCCTCGTGGTCGCCCTCC
ATGTGAGCCGGCGGAGGGGGAGGGGCGAAGGGGTGGGGGCGGCCGCCGCG
CATCATCTTTTTCATCGGAGGGGGCGGGCCGTGGCGGTGCGGGACACCGT
GGGGGTGAGGGGCACCGTGGCGGTGAGGGGCACCGCGGCGGCCACCGCCG
CCGCGCGCGGCAAACATGGCGTCGCCGACCTCCTGGTGAGCCGGCG
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